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Clustering with faulty centers 具有故障中心的聚类
IF 0.6 4区 计算机科学 Q4 MATHEMATICS Pub Date : 2023-08-21 DOI: 10.1016/j.comgeo.2023.102052
Emily Fox , Hongyao Huang , Benjamin Raichel

In this paper we introduce and formally study the problem of k-clustering with faulty centers. Specifically, we study the faulty versions of k-center, k-median, and k-means clustering, where centers have some probability of not existing, as opposed to prior work where clients had some probability of not existing. For all three problems we provide fixed parameter tractable algorithms, in the parameters k, d, and ε, that (1+ε)-approximate the minimum expected cost solutions for points in d dimensional Euclidean space. For Faulty k-center we additionally provide a 5-approximation for general metrics. Significantly, all of our algorithms have only a linear dependence on n.

在本文中,我们引入并正式研究了具有故障中心的k-聚类问题。具体来说,我们研究了k-中心、k-中值和k-均值聚类的错误版本,其中中心有一定的不存在概率,而之前的工作中客户端有一定的可能性不存在。对于这三个问题,我们提供了固定参数的可处理算法,在参数k、d和ε中,(1+ε)-近似于d维欧氏空间中点的最小期望成本解。对于故障k中心,我们还提供了一般度量的5近似值。值得注意的是,我们所有的算法对n只有线性依赖关系。
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引用次数: 0
On algorithmic complexity of imprecise spanners 不精确扳手的算法复杂度
IF 0.6 4区 计算机科学 Q4 MATHEMATICS Pub Date : 2023-08-16 DOI: 10.1016/j.comgeo.2023.102051
Abolfazl Poureidi , Mohammad Farshi

Let t>1 be a real number. A geometric t-spanner is a geometric graph for a point set in Rd with straight line segments between vertices such that the ratio of the shortest-path distance between every pair of vertices in the graph (with Euclidean edge lengths) to their actual Euclidean distance is at most t.

An imprecise point set is modeled by a set R of regions in Rd. If one chooses a point inside each region of R, then the resulting point set is called a precise instance from R. An imprecise t-spanner for an imprecise point set R is a graph G=(R,E) such that for each precise instance S from R, graph GS=(S,ES), where ES is the set of edges corresponding to E and S, is a t-spanner.

In this paper, we show an imprecise point set R of n straight-line segments in the plane such that any imprecise t-spanner for R has Ω(n2) edges. Then, we give an algorithm that computes an imprecise t-spanner for a set of n pairwise disjoint d-dimensional balls with arbitrary sizes. This imprecise t-spanner has O(n/(t1)d) edges and can be computed in O(nlogn/(t1)d) time. Finally, we show that given an imprecise spanner, finding a precise instance such that its corresponding precise spanner has minimum dilation between all possible precise instances of the imprecise spanner is NP-hard, no matter if crossing edges are allowed or not.

设t>1为实数。几何t形钳是Rd中点集的几何图,顶点之间有直线段,图中每对顶点之间的最短路径距离(具有欧几里得边长度)与实际欧几里得距离的比率不超过。一个不精确的点集由Rd中的区域集R来建模。如果在R的每个区域内选择一个点,对于不精确点集R的不精确t形扳手是一个图G=(R,E),使得对于来自R的每个精确实例S,图GS=(S,ES),其中ES是对应于E和S的边的集合,是一个t形扳手。本文给出了平面上n个直线段的不精确点集R,使得任意R的不精确t形扳手都有Ω(n2)条边。然后,我们给出了一种算法,用于计算任意大小的n对不相交的d维球的不精确t形扳手。这个不精确的t形扳手有O(n/(t−1)d)条边,可以在O(nlog n/(t−1)d)时间内计算出来。最后,我们证明了给定一个不精确扳手,无论是否允许交叉边,找到一个精确实例,使其对应的精确扳手在所有可能的不精确扳手的精确实例之间具有最小的膨胀是np困难的。
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引用次数: 0
Augmenting graphs to minimize the radius 扩充图形以最小化半径
IF 0.6 4区 计算机科学 Q4 MATHEMATICS Pub Date : 2023-08-01 DOI: 10.1016/j.comgeo.2023.101996
Joachim Gudmundsson , Yuan Sha

We study the problem of augmenting a metric graph by adding k edges while minimizing the radius of the augmented graph. We give a simple 3-approximation algorithm and show that there is no polynomial-time (5/3ϵ)-approximation algorithm, for any ϵ>0, unless P=NP.

We also give two exact algorithms for the special case when the input graph is a tree, one of which is generalized to handle metric graphs with bounded treewidth.

我们研究了通过增加k条边来扩充度量图的问题,同时最小化扩充图的半径。我们给出了一个简单的3-近似算法,并证明对于任何一个ε>;0,除非P=NP。对于输入图为树的特殊情况,我们还给出了两个精确的算法,其中一个算法被推广到处理具有有界树宽的度量图。
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引用次数: 0
Keep your distance: Land division with separation 保持距离:土地分割与分离
IF 0.6 4区 计算机科学 Q4 MATHEMATICS Pub Date : 2023-08-01 DOI: 10.1016/j.comgeo.2023.102006
Edith Elkind , Erel Segal-Halevi , Warut Suksompong

This paper is part of an ongoing endeavor to bring the theory of fair division closer to practice by handling requirements from real-life applications. We focus on two requirements originating from the division of land estates: (1) each agent should receive a plot of a usable geometric shape, and (2) plots of different agents must be physically separated. With these requirements, the classic fairness notion of proportionality is impractical, since it may be impossible to attain any multiplicative approximation of it. In contrast, the ordinal maximin share approximation, introduced by Budish in 2011, provides meaningful fairness guarantees. We prove upper and lower bounds on achievable maximin share guarantees when the usable shapes are squares, fat rectangles, or arbitrary axis-aligned rectangles, and explore the algorithmic and query complexity of finding fair partitions in this setting. Our work makes use of tools and concepts from computational geometry such as independent sets of rectangles and guillotine partitions.

本文是一项正在进行的努力的一部分,通过处理现实应用中的需求,使公平分配理论更接近实践。我们关注两项源自土地产业划分的要求:(1)每个代理人应获得一块可用几何形状的地块,以及(2)不同代理人的地块必须物理分离。有了这些要求,比例的经典公平概念是不切实际的,因为它可能不可能实现任何乘法近似。相比之下,Budish在2011年引入的序数最大化份额近似提供了有意义的公平保证。当可用形状是正方形、胖矩形或任意轴对齐矩形时,我们证明了可实现的最大共享保证的上界和下界,并探讨了在这种设置下寻找公平分区的算法和查询复杂性。我们的工作利用了计算几何中的工具和概念,如独立的矩形集和剪切分区。
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引用次数: 10
Any platonic solid can transform to another by O(1) refoldings 任何柏拉图式的固体都可以通过O(1)重折叠转化为另一个
IF 0.6 4区 计算机科学 Q4 MATHEMATICS Pub Date : 2023-08-01 DOI: 10.1016/j.comgeo.2023.101995
Erik D. Demaine, Martin L. Demaine, Yevhenii Diomidov, Tonan Kamata, Ryuhei Uehara, Hanyu Alice Zhang

We show that several classes of polyhedra are joined by a sequence of O(1) refolding steps, where each refolding step unfolds the current polyhedron (allowing cuts anywhere on the surface and allowing overlap) and folds that unfolding into exactly the next polyhedron; in other words, a polyhedron is refoldable into another polyhedron if they share a common unfolding. Specifically, assuming equal surface area, we prove that (1) any two tetramonohedra are refoldable to each other, (2) any doubly covered triangle is refoldable to a tetramonohedron, (3) any (augmented) regular prismatoid and doubly covered regular polygon is refoldable to a tetramonohedron, (4) any tetrahedron has a 3-step refolding sequence to a tetramonohedron, and (5) the regular dodecahedron has a 4-step refolding sequence to a tetramonohedron. In particular, we obtain a ≤6-step refolding sequence between any pair of Platonic solids, applying (5) for the dodecahedron and (1) and/or (2) for all other Platonic solids. As far as the authors know, this is the first result about common unfolding involving the regular dodecahedron.

我们展示了几类多面体通过一系列O(1)重折叠步骤连接在一起,其中每个重折叠步骤展开当前多面体(允许在曲面上的任何位置进行切割并允许重叠),并将展开的多面体折叠成下一个多面体;换句话说,如果一个多面体共享一个共同的展开,那么它们就可以重新折叠成另一个多面体。具体地说,假设表面积相等,我们证明了(1)任何两个四面体都可以相互重折叠,(2)任何双覆盖三角形都可以重折叠为四面体,(3)任何(增广的)正棱柱体和双覆盖正多边形都可以重形为四面体,和(5)正十二面体具有四步重折叠序列为四面体。特别地,我们在任何一对柏拉图固体之间获得≤6步重折叠序列,对十二面体应用(5),对所有其他柏拉图固体应用(1)和/或(2)。据作者所知,这是涉及正十二面体的常见展开的第一个结果。
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引用次数: 0
Geometric dominating-set and set-cover via local-search 基于局部搜索的几何支配集和集合覆盖
IF 0.6 4区 计算机科学 Q4 MATHEMATICS Pub Date : 2023-08-01 DOI: 10.1016/j.comgeo.2023.102007
Minati De , Abhiruk Lahiri

In this paper, we study two classic optimization problems: minimum geometric dominating set and set cover. In the dominating-set problem, for a given set of objects in the plane as input, the objective is to choose a minimum number of input objects such that every input object is dominated by the chosen set of objects. Here, we say that one object is dominated by another if their intersection is nonempty. For the second problem, for a given set of points and objects in the plane, the objective is to choose a minimum number of objects to cover all the points. This is a particular version of the set-cover problem.

Both problems have been well-studied, subject to various restrictions on the input objects. These problems are APX-hard for object sets consisting of axis-parallel rectangles, ellipses, α-fat objects of constant description complexity, and convex polygons. On the other hand, PTASs (polynomial time approximation schemes) are known for object sets consisting of disks or unit squares. Surprisingly, a PTAS was unknown even for arbitrary squares. For both problems obtaining a PTAS remains open for a large class of objects.

For the dominating-set problem, we prove that a popular local-search algorithm leads to a (1+ε) approximation for a family of homothets of a convex object (which includes arbitrary squares, k-regular polygons, translated and scaled copies of a convex set, etc.) in nO(1/ε2) time. On the other hand, the same approach leads to a PTAS for the geometric covering problem when the objects are convex pseudodisks (which include disks, unit height rectangles, homothetic convex objects, etc.). Consequently, we obtain an easy-to-implement approximation algorithm for both problems for a large class of objects, significantly improving the best-known approximation guarantees.

本文研究了两个经典的优化问题:最小几何控制集和集覆盖。在支配集问题中,对于作为输入的平面中的给定对象集,目标是选择最小数量的输入对象,使得每个输入对象都由所选择的对象集支配。在这里,我们说一个对象被另一个对象支配,如果它们的交集不是空的。对于第二个问题,对于平面中给定的一组点和对象,目标是选择最小数量的对象来覆盖所有点。这是封面问题的一个特殊版本。这两个问题都经过了很好的研究,受到输入对象的各种限制。对于由轴平行矩形、椭圆、描述复杂度恒定的α-胖对象和凸多边形组成的对象集,这些问题是APX难题。另一方面,对于由圆盘或单位正方形组成的对象集,已知PTAS(多项式时间近似方案)。令人惊讶的是,即使对于任意正方形,PTAS也是未知的。对于这两个问题,获得PTAS对于一大类对象仍然是开放的。对于支配集问题,我们证明了一种流行的局部搜索算法在nO(1/ε2)时间内对凸对象(包括任意正方形、k-正多边形、凸集的平移和缩放副本等)的一族同源图给出了(1+ε)近似。另一方面,当对象是凸拟圆盘(包括圆盘、单位高度矩形、同构凸对象等)时,同样的方法导致了几何覆盖问题的PTAS。因此,我们对一大类对象的这两个问题都获得了一个易于实现的近似算法,显著提高了已知的近似保证。
{"title":"Geometric dominating-set and set-cover via local-search","authors":"Minati De ,&nbsp;Abhiruk Lahiri","doi":"10.1016/j.comgeo.2023.102007","DOIUrl":"https://doi.org/10.1016/j.comgeo.2023.102007","url":null,"abstract":"<div><p>In this paper, we study two classic optimization problems<span>: minimum geometric dominating set and set cover. In the dominating-set problem, for a given set of objects in the plane as input, the objective is to choose a minimum number of input objects such that every input object is dominated by the chosen set of objects. Here, we say that one object is dominated by another if their intersection is nonempty. For the second problem, for a given set of points and objects in the plane, the objective is to choose a minimum number of objects to cover all the points. This is a particular version of the set-cover problem.</span></p><p>Both problems have been well-studied, subject to various restrictions on the input objects. These problems are <span><math><mi>APX</mi></math></span><span>-hard for object sets consisting of axis-parallel rectangles, ellipses, </span><em>α</em><span>-fat objects of constant description complexity, and convex polygons. On the other hand, </span><span><math><mi>PTAS</mi></math></span><span>s (polynomial time approximation schemes) are known for object sets consisting of disks or unit squares. Surprisingly, a </span><span><math><mi>PTAS</mi></math></span> was unknown even for arbitrary squares. For both problems obtaining a <span><math><mi>PTAS</mi></math></span> remains open for a large class of objects.</p><p>For the dominating-set problem, we prove that a popular local-search algorithm leads to a <span><math><mo>(</mo><mn>1</mn><mo>+</mo><mi>ε</mi><mo>)</mo></math></span> approximation for a family of homothets of a convex object (which includes arbitrary squares, <em>k</em><span>-regular polygons, translated and scaled copies of a convex set, etc.) in </span><span><math><msup><mrow><mi>n</mi></mrow><mrow><mi>O</mi><mo>(</mo><mn>1</mn><mo>/</mo><msup><mrow><mi>ε</mi></mrow><mrow><mn>2</mn></mrow></msup><mo>)</mo></mrow></msup></math></span> time. On the other hand, the same approach leads to a <span><math><mi>PTAS</mi></math></span><span> for the geometric covering problem<span> when the objects are convex pseudodisks (which include disks, unit height rectangles, homothetic convex objects, etc.). Consequently, we obtain an easy-to-implement approximation algorithm for both problems for a large class of objects, significantly improving the best-known approximation guarantees.</span></span></p></div>","PeriodicalId":51001,"journal":{"name":"Computational Geometry-Theory and Applications","volume":"113 ","pages":"Article 102007"},"PeriodicalIF":0.6,"publicationDate":"2023-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49882871","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Straight-line drawings of 1-planar graphs 1-平面图的直线图
IF 0.6 4区 计算机科学 Q4 MATHEMATICS Pub Date : 2023-07-04 DOI: 10.1016/j.comgeo.2023.102036
Franz J. Brandenburg

A graph is 1-planar if it can be drawn in the plane such that each edge is crossed at most once. However, there are 1-planar graphs that do not admit a straight-line 1-planar drawing. We show that every 1-planar graph has a straight-line drawing with a two-coloring of the edges such that edges of the same color do not cross. Thus 1-planar graphs have geometric thickness two. In addition, the drawing is nearly 1-planar, that is, it is 1-planar if all fan-crossed edges are removed. An edge is fan-crossed if it is crossed by edges with a common vertex if it is crossed more than twice. The drawing algorithm uses high precision arithmetic with numbers with O(nlogn) digits and computes the straight-line drawing from a 1-planar drawing in linear time on a real RAM.

如果图可以在平面中绘制,使得每条边最多相交一次,那么它就是1-平面的。然而,有些单平面图不允许使用直线单平面图。我们证明了每个1-平面图都有一个边有两种颜色的直线图,这样同一颜色的边就不会相交。因此,1-平面图具有几何厚度2。此外,该图形几乎是单平面的,也就是说,如果删除了所有扇形交叉边,则该图形是单平面。如果一条边与具有公共顶点的边相交,如果该边相交两次以上,则该边为扇形相交。绘图算法使用高精度算术,数字为O(nlog⁡n) 数字,并在真实RAM上以线性时间从1-平面图形计算直线图形。
{"title":"Straight-line drawings of 1-planar graphs","authors":"Franz J. Brandenburg","doi":"10.1016/j.comgeo.2023.102036","DOIUrl":"https://doi.org/10.1016/j.comgeo.2023.102036","url":null,"abstract":"<div><p>A graph is 1-planar if it can be drawn in the plane such that each edge is crossed at most once. However, there are 1-planar graphs that do not admit a straight-line 1-planar drawing. We show that every 1-planar graph has a straight-line drawing with a two-coloring of the edges such that edges of the same color do not cross. Thus 1-planar graphs have geometric thickness two. In addition, the drawing is nearly 1-planar, that is, it is 1-planar if all fan-crossed edges are removed. An edge is fan-crossed if it is crossed by edges with a common vertex if it is crossed more than twice. The drawing algorithm uses high precision arithmetic with numbers with <span><math><mi>O</mi><mo>(</mo><mi>n</mi><mi>log</mi><mo>⁡</mo><mi>n</mi><mo>)</mo></math></span> digits and computes the straight-line drawing from a 1-planar drawing in linear time on a real RAM.</p></div>","PeriodicalId":51001,"journal":{"name":"Computational Geometry-Theory and Applications","volume":"116 ","pages":"Article 102036"},"PeriodicalIF":0.6,"publicationDate":"2023-07-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49846967","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Edge-unfolding nested prismatoids 边展开嵌套棱柱体
IF 0.6 4区 计算机科学 Q4 MATHEMATICS Pub Date : 2023-06-28 DOI: 10.1016/j.comgeo.2023.102033
Manuel Radons

A 3-prismatoid is the convex hull of two convex polygons A and B which lie in parallel planes HA,HBR3. Let A˜ be the orthogonal projection of A onto HB. A 3-prismatoid is called nested if A˜ is properly contained in B, or vice versa. We show that every nested 3-prismatoid has an edge-unfolding to a non-overlapping polygon in the plane.

3-棱柱体是位于平行平面HA、HB⊂R3中的两个凸多边形A和B的凸包。设A~是A在HB上的正交投影。如果A~正确地包含在B中,则3棱柱体被称为嵌套,反之亦然。我们证明了每个嵌套的3-棱柱体都有一条边展开为平面中的非重叠多边形。
{"title":"Edge-unfolding nested prismatoids","authors":"Manuel Radons","doi":"10.1016/j.comgeo.2023.102033","DOIUrl":"https://doi.org/10.1016/j.comgeo.2023.102033","url":null,"abstract":"<div><p>A 3-prismatoid is the convex hull of two convex polygons <em>A</em> and <em>B</em> which lie in parallel planes <span><math><msub><mrow><mi>H</mi></mrow><mrow><mi>A</mi></mrow></msub><mo>,</mo><msub><mrow><mi>H</mi></mrow><mrow><mi>B</mi></mrow></msub><mo>⊂</mo><msup><mrow><mi>R</mi></mrow><mrow><mn>3</mn></mrow></msup></math></span>. Let <span><math><mover><mrow><mi>A</mi></mrow><mrow><mo>˜</mo></mrow></mover></math></span> be the orthogonal projection of <em>A</em> onto <span><math><msub><mrow><mi>H</mi></mrow><mrow><mi>B</mi></mrow></msub></math></span>. A 3-prismatoid is called nested if <span><math><mover><mrow><mi>A</mi></mrow><mrow><mo>˜</mo></mrow></mover></math></span> is properly contained in <em>B</em>, or vice versa. We show that every nested 3-prismatoid has an edge-unfolding to a non-overlapping polygon in the plane.</p></div>","PeriodicalId":51001,"journal":{"name":"Computational Geometry-Theory and Applications","volume":"116 ","pages":"Article 102033"},"PeriodicalIF":0.6,"publicationDate":"2023-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49804594","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Approximating Gromov-Hausdorff distance in Euclidean space 欧氏空间中Gromov-Hausdorff距离的逼近
IF 0.6 4区 计算机科学 Q4 MATHEMATICS Pub Date : 2023-06-24 DOI: 10.1016/j.comgeo.2023.102034
Sushovan Majhi , Jeffrey Vitter , Carola Wenk

The Gromov-Hausdorff distance (dGH) proves to be a useful distance measure between shapes. In order to approximate dGH for X,YRd, we look into its relationship with dH,iso, the infimum Hausdorff distance under Euclidean isometries. As already known for dimension d2, dH,iso cannot be bounded above by a constant factor times dGH. For d=1, however, we prove that dH,iso54dGH. We also show that the bound is tight. In effect, for X,YR with at most n points, this gives rise to an O(nlogn)-time algorithm to approximate dGH(X,Y) with an approximation factor of (1+14).

Gromov-Hausdorff距离(dGH)被证明是一个有用的形状之间的距离度量。为了近似X,Y⊂Rd的dGH,我们研究了它与欧氏等距下的下确界Hausdorff距离dH,iso的关系。正如已经知道的,对于维数d≥2,dH,iso不能在上面由常数因子乘以dGH来定界。然而,对于d=1,我们证明了dH,iso≤54dGH。我们还证明了界限是紧密的。实际上,对于最多有n个点的X,Y⊂R,这会产生O(nlog⁡n) -时间算法,以近似因子(1+14)近似dGH(X,Y)。
{"title":"Approximating Gromov-Hausdorff distance in Euclidean space","authors":"Sushovan Majhi ,&nbsp;Jeffrey Vitter ,&nbsp;Carola Wenk","doi":"10.1016/j.comgeo.2023.102034","DOIUrl":"https://doi.org/10.1016/j.comgeo.2023.102034","url":null,"abstract":"<div><p>The Gromov-Hausdorff distance <span><math><mo>(</mo><msub><mrow><mi>d</mi></mrow><mrow><mi>G</mi><mi>H</mi></mrow></msub><mo>)</mo></math></span> proves to be a useful distance measure between shapes. In order to approximate <span><math><msub><mrow><mi>d</mi></mrow><mrow><mi>G</mi><mi>H</mi></mrow></msub></math></span> for <span><math><mi>X</mi><mo>,</mo><mi>Y</mi><mo>⊂</mo><msup><mrow><mi>R</mi></mrow><mrow><mi>d</mi></mrow></msup></math></span>, we look into its relationship with <span><math><msub><mrow><mi>d</mi></mrow><mrow><mi>H</mi><mo>,</mo><mi>i</mi><mi>s</mi><mi>o</mi></mrow></msub></math></span>, the infimum Hausdorff distance under Euclidean isometries. As already known for dimension <span><math><mi>d</mi><mo>≥</mo><mn>2</mn></math></span>, <span><math><msub><mrow><mi>d</mi></mrow><mrow><mi>H</mi><mo>,</mo><mi>i</mi><mi>s</mi><mi>o</mi></mrow></msub></math></span> cannot be bounded above by a constant factor times <span><math><msub><mrow><mi>d</mi></mrow><mrow><mi>G</mi><mi>H</mi></mrow></msub></math></span>. For <span><math><mi>d</mi><mo>=</mo><mn>1</mn></math></span>, however, we prove that <span><math><msub><mrow><mi>d</mi></mrow><mrow><mi>H</mi><mo>,</mo><mi>i</mi><mi>s</mi><mi>o</mi></mrow></msub><mo>≤</mo><mfrac><mrow><mn>5</mn></mrow><mrow><mn>4</mn></mrow></mfrac><msub><mrow><mi>d</mi></mrow><mrow><mi>G</mi><mi>H</mi></mrow></msub></math></span>. We also show that the bound is tight. In effect, for <span><math><mi>X</mi><mo>,</mo><mi>Y</mi><mo>⊂</mo><mi>R</mi></math></span> with at most <em>n</em> points, this gives rise to an <span><math><mi>O</mi><mo>(</mo><mi>n</mi><mi>log</mi><mo>⁡</mo><mi>n</mi><mo>)</mo></math></span>-time algorithm to approximate <span><math><msub><mrow><mi>d</mi></mrow><mrow><mi>G</mi><mi>H</mi></mrow></msub><mo>(</mo><mi>X</mi><mo>,</mo><mi>Y</mi><mo>)</mo></math></span> with an approximation factor of <span><math><mo>(</mo><mn>1</mn><mo>+</mo><mfrac><mrow><mn>1</mn></mrow><mrow><mn>4</mn></mrow></mfrac><mo>)</mo></math></span>.</p></div>","PeriodicalId":51001,"journal":{"name":"Computational Geometry-Theory and Applications","volume":"116 ","pages":"Article 102034"},"PeriodicalIF":0.6,"publicationDate":"2023-06-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49804595","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 10
From trees to barcodes and back again II: Combinatorial and probabilistic aspects of a topological inverse problem 从树到条形码再回来II:拓扑逆问题的组合和概率方面
IF 0.6 4区 计算机科学 Q4 MATHEMATICS Pub Date : 2023-06-22 DOI: 10.1016/j.comgeo.2023.102031
Justin Curry, Jordan DeSha, Adélie Garin, Kathryn Hess, Lida Kanari, Brendan Mallery

In this paper we consider two aspects of the inverse problem of how to construct merge trees realizing a given barcode. Much of our investigation exploits a recently discovered connection between the symmetric group and barcodes in general position, based on the simple observation that death order is a permutation of birth order. We show how to lift this combinatorial characterization of barcodes to an analogous combinatorialization of merge trees. As result of this study, we provide the first clear combinatorial distinction between the space of phylogenetic trees (as defined by Billera, Holmes and Vogtmann) and the space of merge trees: generic phylogenetic trees on n+1 leaf nodes fall into (2n1)!! distinct equivalence classes, but the analogous number for merge trees is equal to the number of maximal chains in the lattice of partitions, i.e., (n+1)!n!2n. The second aspect of our study is the derivation of precise formulas for the distribution of tree realization numbers (the number of merge trees realizing a given barcode) when we assume that barcodes are sampled using a uniform distribution on the symmetric group. We are able to characterize some of the higher moments of this distribution, thanks in part to a reformulation of our distribution in terms of Dirichlet convolution. This characterization provides a type of null hypothesis, apparently different from the distributions observed in real neuron data, which opens the door to doing more precise statistics and science.

在本文中,我们考虑了如何构造实现给定条形码的合并树的反问题的两个方面。我们的大部分研究都利用了最近发现的对称群和一般位置的条形码之间的联系,基于死亡顺序是出生顺序的排列这一简单观察。我们展示了如何将条形码的这种组合特征提升为合并树的类似组合化。作为这项研究的结果,我们在系统发育树的空间(由Billera、Holmes和Vogtmann定义)和合并树的空间之间提供了第一个明确的组合区别:n+1个叶节点上的一般系统发育树属于(2n−1)!!不同的等价类,但合并树的类似数量等于分区格中最大链的数量,即(n+1)!n2−n。我们研究的第二个方面是,当我们假设条形码是使用对称群上的均匀分布进行采样时,推导出树实现数(实现给定条形码的合并树的数量)分布的精确公式。我们能够表征这种分布的一些高阶矩,这在一定程度上要归功于我们根据狄利克雷卷积对分布的重新表述。这种表征提供了一种类型的零假设,显然不同于在真实神经元数据中观察到的分布,这为进行更精确的统计和科学研究打开了大门。
{"title":"From trees to barcodes and back again II: Combinatorial and probabilistic aspects of a topological inverse problem","authors":"Justin Curry,&nbsp;Jordan DeSha,&nbsp;Adélie Garin,&nbsp;Kathryn Hess,&nbsp;Lida Kanari,&nbsp;Brendan Mallery","doi":"10.1016/j.comgeo.2023.102031","DOIUrl":"https://doi.org/10.1016/j.comgeo.2023.102031","url":null,"abstract":"<div><p>In this paper we consider two aspects of the inverse problem of how to construct merge trees realizing a given barcode. Much of our investigation exploits a recently discovered connection between the symmetric group and barcodes in general position, based on the simple observation that death order is a permutation of birth order. We show how to lift this combinatorial characterization of barcodes to an analogous combinatorialization of merge trees. As result of this study, we provide the first clear combinatorial distinction between the space of phylogenetic trees (as defined by Billera, Holmes and Vogtmann) and the space of merge trees: generic phylogenetic trees on <span><math><mi>n</mi><mo>+</mo><mn>1</mn></math></span> leaf nodes fall into <span><math><mo>(</mo><mn>2</mn><mi>n</mi><mo>−</mo><mn>1</mn><mo>)</mo><mo>!</mo><mo>!</mo></math></span> distinct equivalence classes, but the analogous number for merge trees is equal to the number of maximal chains in the lattice of partitions, i.e., <span><math><mo>(</mo><mi>n</mi><mo>+</mo><mn>1</mn><mo>)</mo><mo>!</mo><mi>n</mi><mo>!</mo><msup><mrow><mn>2</mn></mrow><mrow><mo>−</mo><mi>n</mi></mrow></msup></math></span>. The second aspect of our study is the derivation of precise formulas for the distribution of tree realization numbers (the number of merge trees realizing a given barcode) when we assume that barcodes are sampled using a uniform distribution on the symmetric group. We are able to characterize some of the higher moments of this distribution, thanks in part to a reformulation of our distribution in terms of Dirichlet convolution. This characterization provides a type of null hypothesis, apparently different from the distributions observed in real neuron data, which opens the door to doing more precise statistics and science.</p></div>","PeriodicalId":51001,"journal":{"name":"Computational Geometry-Theory and Applications","volume":"116 ","pages":"Article 102031"},"PeriodicalIF":0.6,"publicationDate":"2023-06-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49846968","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"计算机科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 8
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