Pub Date : 2019-12-01DOI: 10.1017/S1466252319000306
C B Winder, J M Sargeant, D F Kelton, S J Leblanc, T F Duffield, J Glanville, H Wood, K J Churchill, J Dunn, M D Bergevin, K Dawkins, S Meadows, A M O'Connor
A systematic review and meta-analysis were conducted to determine the efficacy of selective dry-cow antimicrobial therapy compared to blanket therapy (all quarters/all cows). Controlled trials were eligible if any of the following were assessed: incidence of clinical mastitis during the first 30 DIM, frequency of intramammary infection (IMI) at calving, or frequency of IMI during the first 30 DIM. From 3480 identified records, nine trials were data extracted for IMI at calving. There was an insufficient number of trials to conduct meta-analysis for the other outcomes. Risk of IMI at calving in selectively treated cows was higher than blanket therapy (RR = 1.34, 95% CI = 1.13, 1.16), but substantial heterogeneity was present (I2 = 58%). Subgroup analysis showed that, for trials using internal teat sealants, there was no difference in IMI risk at calving between groups, and no heterogeneity was present. For trials not using internal teat sealants, there was an increased risk in cows assigned to a selective dry-cow therapy protocol, compared to blanket treatment, with substantial heterogeneity in this subgroup. However, the small number of trials and heterogeneity in the subgroup without internal teat sealants suggests that the relative risk between treatments may differ from the determined point estimates based on other unmeasured factors.
进行了一项系统评价和荟萃分析,以确定选择性干奶牛抗菌治疗与毯子治疗(所有小区/所有奶牛)的疗效。如果评估了以下任何一项,对照试验都是合格的:前30个DIM期间临床乳腺炎的发病率,产犊时乳腺内感染(IMI)的频率,或前30个DIM期间IMI的频率。从3480个已确定的记录中,提取了9个试验产犊时IMI的数据。试验数量不足,无法对其他结果进行荟萃分析。选择性治疗奶牛产犊时发生IMI的风险高于毯子治疗(RR = 1.34, 95% CI = 1.13, 1.16),但存在很大的异质性(I2 = 58%)。亚组分析显示,对于使用内乳头密封剂的试验,产犊时IMI风险在两组之间没有差异,也不存在异质性。对于不使用内乳密封剂的试验,与毯式治疗相比,选择干奶牛治疗方案的奶牛风险增加,该亚组存在很大的异质性。然而,在没有使用内乳头密封剂的亚组中,试验数量少且异质性表明,治疗之间的相对风险可能与基于其他未测量因素的确定点估计不同。
{"title":"Comparative efficacy of blanket versus selective dry-cow therapy: a systematic review and pairwise meta-analysis.","authors":"C B Winder, J M Sargeant, D F Kelton, S J Leblanc, T F Duffield, J Glanville, H Wood, K J Churchill, J Dunn, M D Bergevin, K Dawkins, S Meadows, A M O'Connor","doi":"10.1017/S1466252319000306","DOIUrl":"https://doi.org/10.1017/S1466252319000306","url":null,"abstract":"<p><p>A systematic review and meta-analysis were conducted to determine the efficacy of selective dry-cow antimicrobial therapy compared to blanket therapy (all quarters/all cows). Controlled trials were eligible if any of the following were assessed: incidence of clinical mastitis during the first 30 DIM, frequency of intramammary infection (IMI) at calving, or frequency of IMI during the first 30 DIM. From 3480 identified records, nine trials were data extracted for IMI at calving. There was an insufficient number of trials to conduct meta-analysis for the other outcomes. Risk of IMI at calving in selectively treated cows was higher than blanket therapy (RR = 1.34, 95% CI = 1.13, 1.16), but substantial heterogeneity was present (I2 = 58%). Subgroup analysis showed that, for trials using internal teat sealants, there was no difference in IMI risk at calving between groups, and no heterogeneity was present. For trials not using internal teat sealants, there was an increased risk in cows assigned to a selective dry-cow therapy protocol, compared to blanket treatment, with substantial heterogeneity in this subgroup. However, the small number of trials and heterogeneity in the subgroup without internal teat sealants suggests that the relative risk between treatments may differ from the determined point estimates based on other unmeasured factors.</p>","PeriodicalId":51313,"journal":{"name":"Animal Health Research Reviews","volume":"20 2","pages":"217-228"},"PeriodicalIF":2.5,"publicationDate":"2019-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1017/S1466252319000306","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37663382","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-12-01DOI: 10.1017/S1466252320000031
A M O'Connor, D Hu, S C Totton, N Scott, C B Winder, B Wang, C Wang, J Glanville, H Wood, B White, R Larson, C Waldner, J M Sargeant
We conducted a systematic review and network meta-analysis to determine the comparative efficacy of antibiotics used to control bovine respiratory disease (BRD) in beef cattle on feedlots. The information sources for the review were: MEDLINE®, MEDLINE In-Process and MEDLINE® Daily, AGRICOLA, Epub Ahead of Print, Cambridge Agricultural and Biological Index, Science Citation Index, Conference Proceedings Citation Index - Science, the Proceedings of the American Association of Bovine Practitioners, World Buiatrics Conference, and the United States Food and Drug Administration Freedom of Information New Animal Drug Applications summaries. The eligible population was weaned beef cattle raised in intensive systems. The interventions of interest were injectable antibiotics used at the time the cattle arrived at the feedlot. The outcome of interest was the diagnosis of BRD within 45 days of arrival at the feedlot. The network meta-analysis included data from 46 studies and 167 study arms identified in the review. The results suggest that macrolides are the most effective antibiotics for the reduction of BRD incidence. Injectable oxytetracycline effectively controlled BRD compared with no antibiotics; however, it was less effective than macrolide treatment. Because oxytetracycline is already commonly used to prevent, control, and treat BRD in groups of feedlot cattle, the use of injectable oxytetracycline for BRD control might have advantages from an antibiotic stewardship perspective.
我们进行了一项系统综述和网络荟萃分析,以确定用于控制饲养场肉牛牛呼吸道疾病(BRD)的抗生素的比较疗效。综述的信息来源为:MEDLINE®、MEDLINE In-Process和MEDLINE®Daily、AGRICOLA、Epub Ahead of Print、剑桥农业与生物指数、科学引文索引、会议论文集引文索引-科学、美国牛从业者协会论文集、世界兽医学会议和美国食品和药物管理局信息自由新动物药物应用摘要。合格的人群是在集约化系统中饲养的断奶肉牛。感兴趣的干预措施是在牛到达饲养场时使用的注射抗生素。感兴趣的结果是在到达饲养场后45天内诊断出BRD。网络荟萃分析包括综述中确定的46项研究和167个研究部门的数据。结果表明,大环内酯类抗生素是降低BRD发病率最有效的抗生素。与不注射抗生素相比,注射土霉素可有效控制BRD;然而,它的效果不如大环内酯治疗。由于土霉素已被普遍用于预防、控制和治疗饲养场牛群中的BRD,从抗生素管理的角度来看,使用注射土霉素控制BRD可能具有优势。
{"title":"A systematic review and network meta-analysis of injectable antibiotic options for the control of bovine respiratory disease in the first 45 days post arrival at the feedlot.","authors":"A M O'Connor, D Hu, S C Totton, N Scott, C B Winder, B Wang, C Wang, J Glanville, H Wood, B White, R Larson, C Waldner, J M Sargeant","doi":"10.1017/S1466252320000031","DOIUrl":"10.1017/S1466252320000031","url":null,"abstract":"<p><p>We conducted a systematic review and network meta-analysis to determine the comparative efficacy of antibiotics used to control bovine respiratory disease (BRD) in beef cattle on feedlots. The information sources for the review were: MEDLINE®, MEDLINE In-Process and MEDLINE® Daily, AGRICOLA, Epub Ahead of Print, Cambridge Agricultural and Biological Index, Science Citation Index, Conference Proceedings Citation Index - Science, the Proceedings of the American Association of Bovine Practitioners, World Buiatrics Conference, and the United States Food and Drug Administration Freedom of Information New Animal Drug Applications summaries. The eligible population was weaned beef cattle raised in intensive systems. The interventions of interest were injectable antibiotics used at the time the cattle arrived at the feedlot. The outcome of interest was the diagnosis of BRD within 45 days of arrival at the feedlot. The network meta-analysis included data from 46 studies and 167 study arms identified in the review. The results suggest that macrolides are the most effective antibiotics for the reduction of BRD incidence. Injectable oxytetracycline effectively controlled BRD compared with no antibiotics; however, it was less effective than macrolide treatment. Because oxytetracycline is already commonly used to prevent, control, and treat BRD in groups of feedlot cattle, the use of injectable oxytetracycline for BRD control might have advantages from an antibiotic stewardship perspective.</p>","PeriodicalId":51313,"journal":{"name":"Animal Health Research Reviews","volume":"20 2","pages":"163-181"},"PeriodicalIF":4.3,"publicationDate":"2019-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37663381","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-12-01DOI: 10.1017/S1466252319000318
C B Winder, J M Sargeant, D Hu, C Wang, D F Kelton, M A Godkin, K J Churchill, A M O'Connor
A systematic review and network meta-analysis were conducted to assess the relative efficacy of antimicrobial therapy for clinical mastitis in lactating dairy cattle. Controlled trials in lactating dairy cattle with natural disease exposure were eligible if they compared an antimicrobial treatment to a non-treated control, placebo, or a different antimicrobial, for the treatment of clinical mastitis, and assessed clinical or bacteriologic cure. Potential for bias was assessed using a modified Cochrane Risk of Bias 2.0 tool. From 14775 initially identified records, 54 trials were assessed as eligible. Networks were established for bacteriologic cure by bacterial species group, and clinical cure. Disparate networks among bacteriologic cures precluded meta-analysis. Network meta-analysis was conducted for trials assessing clinical cure, but lack of precision of point estimates resulted in wide credibility intervals for all treatments, with no definitive conclusions regarding relative efficacy. Consideration of network geometry can inform future research to increase the utility of current and previous work. Replication of intervention arms and consideration of connection to existing networks would improve the future ability to determine relative efficacy. Challenges in the evaluation of bias in primary research stemmed from a lack of reporting. Consideration of reporting guidelines would also improve the utility of future research.
通过系统评价和网络荟萃分析来评估抗菌治疗泌乳奶牛临床乳腺炎的相对疗效。如果将抗菌药物治疗与未治疗的对照组、安慰剂或不同的抗菌药物治疗临床乳腺炎进行比较,并评估临床或细菌学治疗,则对暴露于自然疾病的泌乳奶牛进行对照试验是合格的。使用改进的Cochrane Risk of bias 2.0工具评估潜在偏倚。从最初确定的14775份记录中,54项试验被评估为合格。建立了按菌种分组进行细菌学治疗和临床治疗的网络。不同的细菌治疗网络排除了荟萃分析。对评估临床治愈的试验进行了网络荟萃分析,但由于缺乏精确的点估计,导致所有治疗的可信区间都很宽,没有关于相对疗效的明确结论。考虑网络几何可以为未来的研究提供信息,以提高当前和以前工作的效用。复制干预武器和考虑与现有网络的连接将提高未来确定相对疗效的能力。评估初级研究偏倚的挑战源于缺乏报告。审议报告准则也将提高今后研究的效用。
{"title":"Comparative efficacy of antimicrobials for treatment of clinical mastitis in lactating dairy cattle: a systematic review and network meta-analysis.","authors":"C B Winder, J M Sargeant, D Hu, C Wang, D F Kelton, M A Godkin, K J Churchill, A M O'Connor","doi":"10.1017/S1466252319000318","DOIUrl":"10.1017/S1466252319000318","url":null,"abstract":"<p><p>A systematic review and network meta-analysis were conducted to assess the relative efficacy of antimicrobial therapy for clinical mastitis in lactating dairy cattle. Controlled trials in lactating dairy cattle with natural disease exposure were eligible if they compared an antimicrobial treatment to a non-treated control, placebo, or a different antimicrobial, for the treatment of clinical mastitis, and assessed clinical or bacteriologic cure. Potential for bias was assessed using a modified Cochrane Risk of Bias 2.0 tool. From 14775 initially identified records, 54 trials were assessed as eligible. Networks were established for bacteriologic cure by bacterial species group, and clinical cure. Disparate networks among bacteriologic cures precluded meta-analysis. Network meta-analysis was conducted for trials assessing clinical cure, but lack of precision of point estimates resulted in wide credibility intervals for all treatments, with no definitive conclusions regarding relative efficacy. Consideration of network geometry can inform future research to increase the utility of current and previous work. Replication of intervention arms and consideration of connection to existing networks would improve the future ability to determine relative efficacy. Challenges in the evaluation of bias in primary research stemmed from a lack of reporting. Consideration of reporting guidelines would also improve the utility of future research.</p>","PeriodicalId":51313,"journal":{"name":"Animal Health Research Reviews","volume":"20 2","pages":"229-246"},"PeriodicalIF":4.3,"publicationDate":"2019-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37663387","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-12-01DOI: 10.1017/S1466252319000197
Rachael Vriezen, Jan M Sargeant, Ellen Vriezen, Mark Reist, Charlotte B Winder, Annette M O'Connor
Systematic reviews and meta-analyses are used to summarize and interpret evidence for clinical decision-making in human health. The extent of the application of these methods in veterinary medicine and animal agriculture is unknown. The goal of this scoping study was to ascertain trends in the publication of systematic reviews and meta-analyses examining animal health, animal performance, and on-farm food safety. Online databases were searched for reviews published between 1993 and 2018 that focused on relevant outcomes in domestic livestock, companion animals, or wildlife species. In total 1787 titles and abstracts underwent data characterization. Dairy cattle, fish, and pigs were the most common target commodity groups. Few articles investigated both health and performance outcomes (only health: n = 418; only performance: n = 701; both health and performance: n = 103). Most of the reviews (67.6%, n = 1208/1787) described a meta-analysis but did not state in the title or abstract that a systematic review was also conducted, which is potentially problematic. Adherence to reporting guidelines is recommended for all systematic reviews and meta-analyses. For research areas with many reviews, an evidence repository is recommended. For less well-reviewed areas, additional investigation may be necessary to identify the reasons for the lack of synthesis research.
{"title":"Systematic reviews and meta-analyses in animal health, performance, and on-farm food safety: a scoping review.","authors":"Rachael Vriezen, Jan M Sargeant, Ellen Vriezen, Mark Reist, Charlotte B Winder, Annette M O'Connor","doi":"10.1017/S1466252319000197","DOIUrl":"10.1017/S1466252319000197","url":null,"abstract":"<p><p>Systematic reviews and meta-analyses are used to summarize and interpret evidence for clinical decision-making in human health. The extent of the application of these methods in veterinary medicine and animal agriculture is unknown. The goal of this scoping study was to ascertain trends in the publication of systematic reviews and meta-analyses examining animal health, animal performance, and on-farm food safety. Online databases were searched for reviews published between 1993 and 2018 that focused on relevant outcomes in domestic livestock, companion animals, or wildlife species. In total 1787 titles and abstracts underwent data characterization. Dairy cattle, fish, and pigs were the most common target commodity groups. Few articles investigated both health and performance outcomes (only health: n = 418; only performance: n = 701; both health and performance: n = 103). Most of the reviews (67.6%, n = 1208/1787) described a meta-analysis but did not state in the title or abstract that a systematic review was also conducted, which is potentially problematic. Adherence to reporting guidelines is recommended for all systematic reviews and meta-analyses. For research areas with many reviews, an evidence repository is recommended. For less well-reviewed areas, additional investigation may be necessary to identify the reasons for the lack of synthesis research.</p>","PeriodicalId":51313,"journal":{"name":"Animal Health Research Reviews","volume":"20 2","pages":"116-127"},"PeriodicalIF":4.3,"publicationDate":"2019-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37662735","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-12-01DOI: 10.1017/S1466252319000227
Jan M Sargeant, Michele D Bergevin, Katheryn Churchill, Kaitlyn Dawkins, Bhumika Deb, Jennifer Dunn, Dapeng Hu, Catherine M Logue, Shannon Meadows, Carly Moody, Anastasia Novy, Annette M O'Connor, Mark Reist, Yuko Sato, Chong Wang, Charlotte B Winder
A systematic review and network meta-analysis (NMA) were conducted to address the question, 'What is the efficacy of litter management strategies to reduce morbidity, mortality, condemnation at slaughter, or total antibiotic use in broilers?' Eligible studies were clinical trials published in English evaluating the efficacy of litter management in broilers on morbidity, condemnations at slaughter, mortality, or total antibiotic use. Multiple databases and two conference proceedings were searched for relevant literature. After relevance screening and data extraction, there were 50 trials evaluating litter type, 22 trials evaluating litter additives, 10 trials comparing fresh to re-used litter, and six trials evaluating floor type. NMAs were conducted for mortality (61 trials) and for the presence or absence of footpad lesions (15 trials). There were no differences in mortality among the litter types, floor types, or additives. For footpad lesions, peat moss appeared beneficial compared to straw, based on a small number of comparisons. In a pairwise meta-analysis, there was no association between fresh versus used litter on the risk of mortality, although there was considerable heterogeneity among studies (I2 = 66%). There was poor reporting of key design features in many studies, and analyses rarely accounted for non-independence of observations within flocks.
{"title":"The efficacy of litter management strategies to prevent morbidity and mortality in broiler chickens: a systematic review and network meta-analysis.","authors":"Jan M Sargeant, Michele D Bergevin, Katheryn Churchill, Kaitlyn Dawkins, Bhumika Deb, Jennifer Dunn, Dapeng Hu, Catherine M Logue, Shannon Meadows, Carly Moody, Anastasia Novy, Annette M O'Connor, Mark Reist, Yuko Sato, Chong Wang, Charlotte B Winder","doi":"10.1017/S1466252319000227","DOIUrl":"10.1017/S1466252319000227","url":null,"abstract":"<p><p>A systematic review and network meta-analysis (NMA) were conducted to address the question, 'What is the efficacy of litter management strategies to reduce morbidity, mortality, condemnation at slaughter, or total antibiotic use in broilers?' Eligible studies were clinical trials published in English evaluating the efficacy of litter management in broilers on morbidity, condemnations at slaughter, mortality, or total antibiotic use. Multiple databases and two conference proceedings were searched for relevant literature. After relevance screening and data extraction, there were 50 trials evaluating litter type, 22 trials evaluating litter additives, 10 trials comparing fresh to re-used litter, and six trials evaluating floor type. NMAs were conducted for mortality (61 trials) and for the presence or absence of footpad lesions (15 trials). There were no differences in mortality among the litter types, floor types, or additives. For footpad lesions, peat moss appeared beneficial compared to straw, based on a small number of comparisons. In a pairwise meta-analysis, there was no association between fresh versus used litter on the risk of mortality, although there was considerable heterogeneity among studies (I2 = 66%). There was poor reporting of key design features in many studies, and analyses rarely accounted for non-independence of observations within flocks.</p>","PeriodicalId":51313,"journal":{"name":"Animal Health Research Reviews","volume":"20 2","pages":"247-262"},"PeriodicalIF":4.3,"publicationDate":"2019-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37663276","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-06-01DOI: 10.1017/S1466252319000148
Shadi Nayeri, Mehdi Sargolzaei, Dan Tulpan
The current livestock management landscape is transitioning to a high-throughput digital era where large amounts of information captured by systems of electro-optical, acoustical, mechanical, and biosensors is stored and analyzed on a daily and hourly basis, and actionable decisions are made based on quantitative and qualitative analytic results. While traditional animal breeding prediction methods have been used with great success until recently, the deluge of information starts to create a computational and storage bottleneck that could lead to negative long-term impacts on herd management strategies if not handled properly. A plethora of machine learning approaches, successfully used in various industrial and scientific applications, made their way in the mainstream approaches for livestock breeding techniques, and current results show that such methods have the potential to match or surpass the traditional approaches, while most of the time they are more scalable from a computational and storage perspective. This article provides a succinct view on what traditional and novel prediction methods are currently used in the livestock breeding field, how successful they are, and how the future of the field looks in the new digital agriculture era.
{"title":"A review of traditional and machine learning methods applied to animal breeding.","authors":"Shadi Nayeri, Mehdi Sargolzaei, Dan Tulpan","doi":"10.1017/S1466252319000148","DOIUrl":"https://doi.org/10.1017/S1466252319000148","url":null,"abstract":"<p><p>The current livestock management landscape is transitioning to a high-throughput digital era where large amounts of information captured by systems of electro-optical, acoustical, mechanical, and biosensors is stored and analyzed on a daily and hourly basis, and actionable decisions are made based on quantitative and qualitative analytic results. While traditional animal breeding prediction methods have been used with great success until recently, the deluge of information starts to create a computational and storage bottleneck that could lead to negative long-term impacts on herd management strategies if not handled properly. A plethora of machine learning approaches, successfully used in various industrial and scientific applications, made their way in the mainstream approaches for livestock breeding techniques, and current results show that such methods have the potential to match or surpass the traditional approaches, while most of the time they are more scalable from a computational and storage perspective. This article provides a succinct view on what traditional and novel prediction methods are currently used in the livestock breeding field, how successful they are, and how the future of the field looks in the new digital agriculture era.</p>","PeriodicalId":51313,"journal":{"name":"Animal Health Research Reviews","volume":"20 1","pages":"31-46"},"PeriodicalIF":2.5,"publicationDate":"2019-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1017/S1466252319000148","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37506908","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-06-01Epub Date: 2019-11-26DOI: 10.1017/S1466252319000070
Simon Dufour, Vincent Wellemans, Jean-Philippe Roy, Pierre Lacasse, Alfredo Ordonez-Iturriaga, David Francoz
Use of antimicrobial approaches at drying-off for preventing new intramammary infections (IMI) during the dry period in dairy cows could be replaced by non-antimicrobial approaches. Such approaches would be of interest not only for organic but also for conventional dairy producers. The objective of the current review was to quantify the effect of non-antimicrobial internal teat sealant (ITS)-based approaches at drying-off for treating and preventing IMI, when compared with no treatment or with an antimicrobial-based approach. The protocol for this review was published before initiating the review. A total of 18 trials from 16 articles could be used to investigate the effect of an ITS-based approach. With the available results, we conclude with a high level of confidence that non-antimicrobial ITS-based dry-off approaches are efficient for preventing new IMI during the dry period when compared with no treatment, and would reduce risk of new IMI by 52%. Moreover, we are relatively confident that a bismuth subnitrate-based ITS performed better than an antimicrobial for preventing new IMI during the dry period (a risk reduction of 23%). Similarly, we are relatively confident that an ITS-based approach would only slightly or not at all reduce the prevalence of IMI at calving compared with untreated quarters.
{"title":"Non-antimicrobial approaches at drying-off for treating and preventing intramammary infections in dairy cows. Part 1. Meta-analyses of efficacy of using an internal teat sealant without a concomitant antimicrobial treatment.","authors":"Simon Dufour, Vincent Wellemans, Jean-Philippe Roy, Pierre Lacasse, Alfredo Ordonez-Iturriaga, David Francoz","doi":"10.1017/S1466252319000070","DOIUrl":"https://doi.org/10.1017/S1466252319000070","url":null,"abstract":"<p><p>Use of antimicrobial approaches at drying-off for preventing new intramammary infections (IMI) during the dry period in dairy cows could be replaced by non-antimicrobial approaches. Such approaches would be of interest not only for organic but also for conventional dairy producers. The objective of the current review was to quantify the effect of non-antimicrobial internal teat sealant (ITS)-based approaches at drying-off for treating and preventing IMI, when compared with no treatment or with an antimicrobial-based approach. The protocol for this review was published before initiating the review. A total of 18 trials from 16 articles could be used to investigate the effect of an ITS-based approach. With the available results, we conclude with a high level of confidence that non-antimicrobial ITS-based dry-off approaches are efficient for preventing new IMI during the dry period when compared with no treatment, and would reduce risk of new IMI by 52%. Moreover, we are relatively confident that a bismuth subnitrate-based ITS performed better than an antimicrobial for preventing new IMI during the dry period (a risk reduction of 23%). Similarly, we are relatively confident that an ITS-based approach would only slightly or not at all reduce the prevalence of IMI at calving compared with untreated quarters.</p>","PeriodicalId":51313,"journal":{"name":"Animal Health Research Reviews","volume":"20 1","pages":"86-97"},"PeriodicalIF":2.5,"publicationDate":"2019-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1017/S1466252319000070","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37506315","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-06-01Epub Date: 2019-09-16DOI: 10.1017/S1466252319000112
Lauren Wisnieski, Bo Norby, Steven J Pierce, Tyler Becker, Lorraine M Sordillo
Transition cow diseases can negatively impact animal welfare and reduce dairy herd profitability. Transition cow disease incidence has remained relatively stable over time despite monitoring and management efforts aimed to reduce the risk of developing diseases. Dairy cattle disease risk is monitored by assessing multiple factors, including certain biomarker test results, health records, feed intake, body condition score, and milk production. However, these factors, which are used to make herd management decisions, are often reviewed separately without considering the correlation between them. In addition, the biomarkers that are currently used for monitoring may not be representative of the complex physiological changes that occur during the transition period. Predictive modeling, which uses data to predict future or current outcomes, is a method that can be used to combine the most predictive variables and their interactions efficiently. The use of an effective predictive model with relevant predictors for transition cow diseases will result in better targeted interventions, and therefore lower disease incidence. This review will discuss predictive modeling methods and candidate variables in the context of transition cow diseases. The next step is to investigate novel biomarkers and statistical methods that are best suited for the prediction of transition cow diseases.
{"title":"Prospects for predictive modeling of transition cow diseases.","authors":"Lauren Wisnieski, Bo Norby, Steven J Pierce, Tyler Becker, Lorraine M Sordillo","doi":"10.1017/S1466252319000112","DOIUrl":"https://doi.org/10.1017/S1466252319000112","url":null,"abstract":"<p><p>Transition cow diseases can negatively impact animal welfare and reduce dairy herd profitability. Transition cow disease incidence has remained relatively stable over time despite monitoring and management efforts aimed to reduce the risk of developing diseases. Dairy cattle disease risk is monitored by assessing multiple factors, including certain biomarker test results, health records, feed intake, body condition score, and milk production. However, these factors, which are used to make herd management decisions, are often reviewed separately without considering the correlation between them. In addition, the biomarkers that are currently used for monitoring may not be representative of the complex physiological changes that occur during the transition period. Predictive modeling, which uses data to predict future or current outcomes, is a method that can be used to combine the most predictive variables and their interactions efficiently. The use of an effective predictive model with relevant predictors for transition cow diseases will result in better targeted interventions, and therefore lower disease incidence. This review will discuss predictive modeling methods and candidate variables in the context of transition cow diseases. The next step is to investigate novel biomarkers and statistical methods that are best suited for the prediction of transition cow diseases.</p>","PeriodicalId":51313,"journal":{"name":"Animal Health Research Reviews","volume":"20 1","pages":"19-30"},"PeriodicalIF":2.5,"publicationDate":"2019-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1017/S1466252319000112","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37506909","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-06-01DOI: 10.1017/S1466252319000136
Zenhwa Ouyang, Jan Sargeant, Alison Thomas, Kate Wycherley, Rebecca Ma, Rosa Esmaeilbeigi, Ali Versluis, Deborah Stacey, Elizabeth Stone, Zvonimir Poljak, Theresa M Bernardo
Research in big data, informatics, and bioinformatics has grown dramatically (Andreu-Perez J, et al., 2015, IEEE Journal of Biomedical and Health Informatics 19, 1193-1208). Advances in gene sequencing technologies, surveillance systems, and electronic medical records have increased the amount of health data available. Unconventional data sources such as social media, wearable sensors, and internet search engine activity have also contributed to the influx of health data. The purpose of this study was to describe how 'big data', 'informatics', and 'bioinformatics' have been used in the animal health and veterinary medical literature and to map and chart publications using these terms through time. A scoping review methodology was used. A literature search of the terms 'big data', 'informatics', and 'bioinformatics' was conducted in the context of animal health and veterinary medicine. Relevance screening on abstract and full-text was conducted sequentially. In order for articles to be relevant, they must have used the words 'big data', 'informatics', or 'bioinformatics' in the title or abstract and full-text and have dealt with one of the major animal species encountered in veterinary medicine. Data items collected for all relevant articles included species, geographic region, first author affiliation, and journal of publication. The study level, study type, and data sources were collected for primary studies. After relevance screening, 1093 were classified. While there was a steady increase in 'bioinformatics' articles between 1995 and the end of the study period, 'informatics' articles reached their peak in 2012, then declined. The first 'big data' publication in animal health and veterinary medicine was in 2012. While few articles used the term 'big data' (n = 14), recent growth in 'big data' articles was observed. All geographic regions produced publications in 'informatics' and 'bioinformatics' while only North America, Europe, Asia, and Australia/Oceania produced publications about 'big data'. 'Bioinformatics' primary studies tended to use genetic data and tended to be conducted at the genetic level. In contrast, 'informatics' primary studies tended to use non-genetic data sources and conducted at an organismal level. The rapidly evolving definition of 'big data' may lead to avoidance of the term.
(Andreu-Perez J, et ., 2015, IEEE Journal of Biomedical and Health informatics, 19, 1193-1208)。基因测序技术、监测系统和电子医疗记录的进步增加了可用健康数据的数量。社交媒体、可穿戴传感器和互联网搜索引擎活动等非常规数据源也促成了健康数据的涌入。本研究的目的是描述“大数据”、“信息学”和“生物信息学”是如何在动物健康和兽医医学文献中使用的,并对使用这些术语的出版物进行绘制和图表。使用了范围审查方法。在动物健康和兽医学的背景下,对“大数据”、“信息学”和“生物信息学”这三个术语进行了文献检索。按顺序对摘要和全文进行相关性筛选。为了使文章具有相关性,他们必须在标题或摘要和全文中使用“大数据”、“信息学”或“生物信息学”等词,并且涉及兽医学中遇到的主要动物物种之一。收集的所有相关文章的数据项目包括物种、地理区域、第一作者隶属关系和出版期刊。收集了初步研究的研究水平、研究类型和数据来源。经相关性筛选,分类1093例。虽然从1995年到研究期结束,“生物信息学”的文章稳步增加,但“信息学”的文章在2012年达到顶峰,然后下降。2012年,动物健康和兽医领域首次发表了“大数据”出版物。虽然很少有文章使用“大数据”一词(n = 14),但我们观察到最近“大数据”文章的增长。所有地理区域都出版了“信息学”和“生物信息学”方面的出版物,而只有北美、欧洲、亚洲和澳大利亚/大洋洲出版了关于“大数据”的出版物。“生物信息学”的初级研究倾向于使用遗传数据,并倾向于在遗传水平上进行。相比之下,“信息学”初级研究倾向于使用非遗传数据源,并在生物体水平上进行。“大数据”定义的快速演变可能会导致人们回避这个术语。
{"title":"A scoping review of 'big data', 'informatics', and 'bioinformatics' in the animal health and veterinary medical literature.","authors":"Zenhwa Ouyang, Jan Sargeant, Alison Thomas, Kate Wycherley, Rebecca Ma, Rosa Esmaeilbeigi, Ali Versluis, Deborah Stacey, Elizabeth Stone, Zvonimir Poljak, Theresa M Bernardo","doi":"10.1017/S1466252319000136","DOIUrl":"10.1017/S1466252319000136","url":null,"abstract":"<p><p>Research in big data, informatics, and bioinformatics has grown dramatically (Andreu-Perez J, et al., 2015, IEEE Journal of Biomedical and Health Informatics 19, 1193-1208). Advances in gene sequencing technologies, surveillance systems, and electronic medical records have increased the amount of health data available. Unconventional data sources such as social media, wearable sensors, and internet search engine activity have also contributed to the influx of health data. The purpose of this study was to describe how 'big data', 'informatics', and 'bioinformatics' have been used in the animal health and veterinary medical literature and to map and chart publications using these terms through time. A scoping review methodology was used. A literature search of the terms 'big data', 'informatics', and 'bioinformatics' was conducted in the context of animal health and veterinary medicine. Relevance screening on abstract and full-text was conducted sequentially. In order for articles to be relevant, they must have used the words 'big data', 'informatics', or 'bioinformatics' in the title or abstract and full-text and have dealt with one of the major animal species encountered in veterinary medicine. Data items collected for all relevant articles included species, geographic region, first author affiliation, and journal of publication. The study level, study type, and data sources were collected for primary studies. After relevance screening, 1093 were classified. While there was a steady increase in 'bioinformatics' articles between 1995 and the end of the study period, 'informatics' articles reached their peak in 2012, then declined. The first 'big data' publication in animal health and veterinary medicine was in 2012. While few articles used the term 'big data' (n = 14), recent growth in 'big data' articles was observed. All geographic regions produced publications in 'informatics' and 'bioinformatics' while only North America, Europe, Asia, and Australia/Oceania produced publications about 'big data'. 'Bioinformatics' primary studies tended to use genetic data and tended to be conducted at the genetic level. In contrast, 'informatics' primary studies tended to use non-genetic data sources and conducted at an organismal level. The rapidly evolving definition of 'big data' may lead to avoidance of the term.</p>","PeriodicalId":51313,"journal":{"name":"Animal Health Research Reviews","volume":"20 1","pages":"1-18"},"PeriodicalIF":4.3,"publicationDate":"2019-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37506912","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-06-01DOI: 10.1017/s146625231900032x
{"title":"AHR volume 20 issue 1 Cover and Front matter","authors":"","doi":"10.1017/s146625231900032x","DOIUrl":"https://doi.org/10.1017/s146625231900032x","url":null,"abstract":"","PeriodicalId":51313,"journal":{"name":"Animal Health Research Reviews","volume":"20 1","pages":"f1 - f1"},"PeriodicalIF":2.5,"publicationDate":"2019-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1017/s146625231900032x","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48689923","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}