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A review of strategies to impact swine feed biosecurity. 影响猪饲料生物安全的策略综述。
IF 2.5 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2020-06-01 Epub Date: 2020-09-07 DOI: 10.1017/S146625231900015X
Savannah C Stewart, Steve S Dritz, Jason C Woodworth, Chad Paulk, Cassandra K Jones

Global pork production has largely adopted on-farm biosecurity to minimize vectors of disease transmission and protect swine health. Feed and ingredients were not originally thought to be substantial vectors, but recent incidents have demonstrated their ability to harbor disease. The objective of this paper is to review the potential role of swine feed as a disease vector and describe biosecurity measures that have been evaluated as a way of maintaining swine health. Recent research has demonstrated that viruses such as porcine epidemic diarrhea virus and African Swine Fever Virus can survive conditions of transboundary shipment in soybean meal, lysine, and complete feed, and contaminated feed can cause animal illness. Recent research has focused on potential methods of preventing feed-based pathogens from infecting pigs, including prevention of entry to the feed system, mitigation by thermal processing, or decontamination by chemical additives. Strategies have been designed to understand the spread of pathogens throughout the feed manufacturing environment, including potential batch-to-batch carryover, thus reducing transmission risk. In summary, the focus on feed biosecurity in recent years is warranted, but additional research is needed to further understand the risk and identify cost-effective approaches to maintain feed biosecurity as a way of protecting swine health.

全球猪肉生产在很大程度上采用了农场生物安全措施,以最大限度地减少疾病传播媒介并保护猪的健康。饲料和配料最初并不被认为是重要的病媒,但最近的事件表明它们有能力窝藏疾病。本文的目的是回顾猪饲料作为疾病媒介的潜在作用,并描述已被评估为维持猪健康的一种方法的生物安全措施。最近的研究表明,猪流行性腹泻病毒和非洲猪瘟病毒等病毒可以在豆粕、赖氨酸和全饲料的跨境运输条件下存活,而受污染的饲料可引起动物疾病。最近的研究集中在防止饲料病原体感染猪的潜在方法上,包括防止进入饲料系统,通过热加工或化学添加剂去污染来缓解。已经制定了战略,以了解病原体在整个饲料生产环境中的传播情况,包括潜在的批次到批次的结转,从而降低传播风险。综上所述,近年来对饲料生物安全的关注是有必要的,但需要进一步的研究来进一步了解风险,并确定维持饲料生物安全作为保护猪健康的一种经济有效的方法。
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引用次数: 8
A review of congenital tremor type A-II in piglets. 仔猪A- ii型先天性震颤的研究进展。
IF 2.5 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2020-06-01 Epub Date: 2020-02-18 DOI: 10.1017/S146625232000002X
Hedvig Stenberg, Magdalena Jacobson, Maja Malmberg

Congenital tremor (CT) is a neurological disease that affects new-born piglets. It was described in 1922 and six different forms, designated type AI-V and type B, are described based on the causative agents, as well as specific histological findings in the central nervous system (CNS). The various forms present with identical clinical signs consisting of mild to severe tremor of the head and body, sometimes complicated with ataxia. By definition, all A-forms have hypomyelination of the CNS, whereas there are no histopathological lesions with the B-form. The cause of the A-II form was long unknown, however, at present several different viruses have been proposed as the causative agent: porcine circovirus-II (PCV-II), astrovirus, PCV-like virus P1, and atypical porcine pestivirus (APPV). Currently, APPV is the only virus that has been proven to fulfill Mokili's Metagenomic Koch's Postulates. Following infection of the pregnant sow, the virus passes the placental barrier and infects the fetus. Interestingly, no clinical signs of disease have been associated with APPV in adult pigs. Furthermore, other viruses cannot be ruled out as additional potential causes of CT. Given the increased interest and research in CT type A-II, the aim of this review is to summarize current knowledge.

先天性震颤(CT)是一种影响新生仔猪的神经系统疾病。它于1922年被描述,并根据病原体以及中枢神经系统(CNS)的特定组织学发现描述了六种不同的形式,称为AI-V型和B型。不同的形式表现出相同的临床症状,包括轻微到严重的头部和身体震颤,有时并发共济失调。根据定义,所有a型均有中枢神经系统髓鞘硬化,而b型没有组织病理学病变。A-II型的病因一直不清楚,然而,目前提出了几种不同的病毒作为病原体:猪圆环病毒- ii (PCV-II)、星状病毒、pcv样病毒P1和非典型猪瘟病毒(APPV)。目前,APPV是唯一一种被证明符合Mokili的宏基因组Koch假设的病毒。妊娠母猪感染后,病毒通过胎盘屏障感染胎儿。有趣的是,在成年猪中没有与APPV相关的临床症状。此外,不能排除其他病毒也是CT的潜在病因。鉴于对A-II型CT的兴趣和研究的增加,本文的目的是总结目前的知识。
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引用次数: 13
Zoonotic pathogens in urban animals: Enough research to protect the health of the urban population? 城市动物的人畜共患病原体:足够的研究来保护城市人口的健康?
IF 2.5 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2020-06-01 Epub Date: 2020-02-13 DOI: 10.1017/S1466252319000100
Johanna Lindahl, Ulf Magnusson

With more than half of the global population living in cities, the urban areas are also teeming with animals, including peridomestic wildlife, pets, and livestock. Urban animals may carry zoonotic pathogens, and crowded conditions in cities can increase the risk for the human population. We used a systematic approach to screen two publication databases as well as gray literature, and quantified the studies conducted on zoonoses in urban animals with respect to the geographic distribution, the host animal and pathogens. Out of 876 references found, 93 were included into final data extraction. Few studies were from the rapidly expanding cities in low- and middle-income countries where urban livestock-keeping is far more prominent than in high-income countries. Most studies were performed in peridomestic wildlife and pets, less in livestock. The most common category of pathogens studied were gastrointestinal parasites followed by gastrointestinal bacteria, whereas studies on some other zoonoses internationally recognized as critical for public health were few or absent. In conclusion, to mitigate the risks of emergence of zoonoses from urban animals this review highlights the research gaps on zoonoses, particularly in livestock in rapidly growing tropical cities and a more comprehensive inclusion of pathogens prioritized by WHO and OIE.

由于全球一半以上的人口居住在城市,城市地区也充斥着动物,包括家养野生动物、宠物和牲畜。城市动物可能携带人畜共患病病原体,城市拥挤的环境会增加人类患病的风险。我们采用系统方法筛选两个出版数据库和灰色文献,从地理分布、宿主动物和病原体等方面对城市动物人畜共患病的研究进行量化。在发现的876篇参考文献中,有93篇纳入最终数据提取。很少有研究来自低收入和中等收入国家迅速扩张的城市,这些国家的城市畜牧业远比高收入国家更为突出。大多数研究是在家养野生动物和宠物身上进行的,在牲畜身上进行的较少。研究的最常见病原体类别是胃肠道寄生虫,其次是胃肠道细菌,而对国际公认对公共卫生至关重要的其他一些人畜共患病的研究很少或根本没有。总而言之,为了减轻城市动物出现人畜共患病的风险,本综述强调了人畜共患病的研究差距,特别是在快速发展的热带城市的牲畜中,以及更全面地纳入世卫组织和国际兽疫局优先考虑的病原体。
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引用次数: 10
'Big Data' in animal health research - opportunities and challenges. 动物健康研究中的“大数据”——机遇与挑战。
IF 2.5 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2020-06-01 Epub Date: 2020-07-20 DOI: 10.1017/S1466252319000215
Janet I MacInnes

Automated systems for high-input data collection and data storage have led to exponential growth in the availability of information. Such datasets and the tools applied to them have been referred to as 'big data'. Starting with a systematic review of the terms 'informatics, bioinformatics and big data' in animal health this special issue of AHRR illustrates some big-data applications with papers on how the use of various omics methods may be used to facilitate the development of improved diagnostics, therapeutics, and vaccines for foodborne pathogens in poultry and on how a better understanding of rumen microbiota could lead to improved feed absorption while minimizing methane production. Other papers in this issue cover the use of big data modeling in dairy cattle for more effective disease interventions and machine learning tools for livestock breeding. The final two reviews describe the use of big data in better vector-borne pathogen forecasts with canine seroprevalence maps and modeling approaches to understand the transmission of avian influenza virus. Although a lot of technical and ethical issues remain with the use of big data, these reviews illustrate the tremendous potential that big-data systems have to revolutionize animal health research.

用于高输入数据收集和数据存储的自动化系统导致了信息可用性的指数级增长。这样的数据集和应用于它们的工具被称为“大数据”。从对动物健康领域“信息学、生物信息学和大数据”这一术语的系统回顾开始,本期AHRR特刊阐述了一些大数据的应用,其中包括如何使用各种组学方法来促进家禽食源性病原体的改进诊断、治疗和疫苗的开发,以及如何更好地了解瘤胃微生物群可以改善饲料吸收,同时最大限度地减少甲烷的产生。本期的其他论文涵盖了在奶牛中使用大数据建模进行更有效的疾病干预和牲畜育种的机器学习工具。最后两篇综述描述了大数据在更好的媒介传播病原体预测中的应用,包括犬血清流行率图和建模方法,以了解禽流感病毒的传播。尽管大数据的使用仍然存在许多技术和伦理问题,但这些评论说明了大数据系统在彻底改变动物健康研究方面的巨大潜力。
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引用次数: 0
Causes, types, etiological agents, prevalence, diagnosis, treatment, prevention, effects on human health and future aspects of bovine mastitis. 牛乳腺炎的原因、类型、病原、流行、诊断、治疗、预防、对人类健康的影响和未来方面。
IF 2.5 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2020-06-01 Epub Date: 2020-02-13 DOI: 10.1017/S1466252319000094
Aqeela Ashraf, Muhammad Imran

Mastitis is among the most common and challenging diseases of dairy animals. It is an inflammation of udder tissues due to physical damage, chemical irritation, or infection caused by certain pathogens. Bovine mastitis has been known for ages, but its complex etiology and multi-factorial nature make it difficult to control. Mastitis may have a negative impact on human health by inducing antibiotic-resistant pathogens that may spread, which is threatening. Researchers are continuously struggling to devise suitable methods for mastitis control. Management strategies are mainly focused on disease prevention by farm management which includes proper hygiene, trained staff to monitor minor changes in the udder or milk, and better diagnostic and treatment methods. New technologies which have the potential to unravel this complicated disease include improved diagnostic tools, based on advanced genomics or proteomics, prevention, based on vaccines and immune modulators, and metabolic products of probiotics such as bacteriocins and gene therapy.

乳腺炎是奶牛最常见和最具挑战性的疾病之一。它是由某些病原体引起的物理损伤、化学刺激或感染引起的乳房组织炎症。牛乳腺炎已为人所知多年,但其复杂的病因和多因素的性质使其难以控制。乳腺炎可能通过诱导可能传播的耐抗生素病原体对人类健康产生负面影响,这是威胁。研究人员一直在努力设计控制乳腺炎的合适方法。管理战略主要侧重于通过农场管理预防疾病,其中包括适当的卫生、训练有素的工作人员监测乳房或乳汁的微小变化,以及更好的诊断和治疗方法。有可能解开这一复杂疾病的新技术包括改进的诊断工具,基于先进的基因组学或蛋白质组学,预防,基于疫苗和免疫调节剂,以及益生菌的代谢产物,如细菌素和基因治疗。
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引用次数: 47
Efficacy of experimental phage therapies in livestock. 实验性噬菌体疗法对家畜的疗效。
IF 2.5 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2020-06-01 Epub Date: 2020-06-19 DOI: 10.1017/S1466252319000161
Marta Dec, Andrzej Wernicki, Renata Urban-Chmiel

Bacteriophages are the most abundant form of life on earth and are present everywhere. The total number of bacteriophages has been estimated to be 1032 virions. The main division of bacteriophages is based on the type of nucleic acid (DNA or RNA) and on the structure of the capsid. Due to the significant increase in the number of multi-drug-resistant bacteria, bacteriophages could be a useful tool as an alternative to antibiotics in experimental therapies to prevent and to control bacterial infections in people and animals. The aim of this review was to discuss the history of phage therapy as a replacement for antibiotics, in response to EU regulations prohibiting the use of antibiotics in livestock, and to present current examples and results of experimental phage treatments in comparison to antibiotics. The use of bacteriophages to control human infections has had a high success rate, especially in mixed infections caused mainly by Staphylococcus, Pseudomonas, Enterobacter, and Enterococcus. Bacteriophages have also proven to be an effective tool in experimental treatments for combating diseases in livestock.

噬菌体是地球上最丰富的生命形式,无处不在。据估计,噬菌体的总数为1032个病毒粒子。噬菌体的主要划分是基于核酸的类型(DNA或RNA)和衣壳的结构。由于多重耐药细菌数量的显著增加,噬菌体可以作为实验性治疗中抗生素的替代品,用于预防和控制人类和动物的细菌感染。这篇综述的目的是讨论噬菌体治疗作为抗生素替代品的历史,以回应欧盟禁止在牲畜中使用抗生素的规定,并介绍目前与抗生素相比实验性噬菌体治疗的例子和结果。利用噬菌体控制人类感染的成功率很高,特别是在主要由葡萄球菌、假单胞菌、肠杆菌和肠球菌引起的混合感染中。噬菌体也被证明是对抗牲畜疾病的实验性治疗的有效工具。
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引用次数: 14
The microbiome of the digestive system of ruminants - a review. 反刍动物消化系统微生物群研究进展。
IF 2.5 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2020-06-01 Epub Date: 2020-01-10 DOI: 10.1017/S1466252319000069
Paulina Cholewińska, Katarzyna Czyż, Piotr Nowakowski, Anna Wyrostek

This review aims to explain the influence and characterization of the microbiome in the ruminant digestive system by presenting the knowledge collected so far. The knowledge presented in this work is focused on the main factors affecting the microbiome and the main dependencies that have been found in it so far. The microbiome in the rumen is the first to come into contact with the biomass of the forage and its main purpose is to decompose into smaller particles or compounds. With the gradual increase in knowledge about the microbiome, there is a chance to manipulate it so that the animal continues to live in a symbiotic relationship with it, while reducing greenhouse gas emissions to the environment as well as increasing feed efficiency. Therefore, understanding the influence of the ruminant microbiome is the main step to achieve such results. However, learning the relationship between microorganisms is only at an early stage, because research focuses mainly on taxonomy. Future research should focus on interactions in the ecosystem which is the microbiome, on explaining individual functions and on influence of environmental factors.

本文旨在通过介绍迄今收集到的知识来解释反刍动物消化系统中微生物组的影响和特征。在这项工作中提出的知识集中在影响微生物组的主要因素和迄今为止在其中发现的主要依赖性。瘤胃中的微生物群首先与牧草的生物量接触,其主要目的是分解成更小的颗粒或化合物。随着对微生物群知识的逐渐增加,有机会操纵它,使动物继续与它生活在共生关系中,同时减少对环境的温室气体排放,提高饲料效率。因此,了解反刍动物微生物组的影响是实现这一结果的主要步骤。然而,了解微生物之间的关系只是在早期阶段,因为研究主要集中在分类学上。未来的研究应集中在生态系统中微生物群的相互作用、个体功能的解释和环境因素的影响上。
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引用次数: 38
Translating 'big data': better understanding of host-pathogen interactions to control bacterial foodborne pathogens in poultry. 翻译“大数据”:更好地了解宿主-病原体相互作用以控制家禽中的细菌性食源性病原体。
IF 2.5 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2020-06-01 Epub Date: 2020-01-07 DOI: 10.1017/S1466252319000124
Loïc Deblais, Dipak Kathayat, Yosra A Helmy, Gary Closs, Gireesh Rajashekara

Recent technological advances has led to the generation, storage, and sharing of colossal sets of information ('big data'), and the expansion of 'omics' in science. To date, genomics/metagenomics, transcriptomics, proteomics, and metabolomics are arguably the most ground breaking approaches in food and public safety. Here we review some of the recent studies of foodborne pathogens (Campylobacter spp., Salmonella spp., and Escherichia coli) in poultry using big data. Genomic/metagenomic approaches have reveal the importance of the gut microbiota in health and disease. They have also been used to identify, monitor, and understand the epidemiology of antibiotic-resistance mechanisms and provide concrete evidence about the role of poultry in human infections. Transcriptomics studies have increased our understanding of the pathophysiology and immunopathology of foodborne pathogens in poultry and have led to the identification of host-resistance mechanisms. Proteomic/metabolomic approaches have aided in identifying biomarkers and the rapid detection of low levels of foodborne pathogens. Overall, 'omics' approaches complement each other and may provide, at least in part, a solution to our current food-safety issues by facilitating the development of new rapid diagnostics, therapeutic drugs, and vaccines to control foodborne pathogens in poultry. However, at this time most 'omics' approaches still remain underutilized due to their high cost and the high level of technical skills required.

最近的技术进步导致了海量信息(“大数据”)的生成、存储和共享,以及“组学”在科学领域的扩展。迄今为止,基因组学/宏基因组学、转录组学、蛋白质组学和代谢组学可以说是食品和公共安全领域最具突破性的方法。本文回顾了近年来利用大数据对家禽食源性致病菌(弯曲杆菌、沙门氏菌和大肠杆菌)的研究进展。基因组学/宏基因组学方法揭示了肠道微生物群在健康和疾病中的重要性。它们还被用于确定、监测和了解抗生素耐药机制的流行病学,并提供有关家禽在人类感染中的作用的具体证据。转录组学研究增加了我们对家禽食源性病原体的病理生理学和免疫病理学的理解,并导致宿主耐药机制的鉴定。蛋白质组学/代谢组学方法有助于识别生物标志物和快速检测低水平食源性病原体。总体而言,“组学”方法相互补充,并可能通过促进新的快速诊断、治疗药物和疫苗的开发来控制家禽食源性病原体,至少在一定程度上解决我们当前的食品安全问题。然而,目前大多数“组学”方法由于其高成本和所需的高水平技术技能而仍未得到充分利用。
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引用次数: 8
Development of a systematic mapping review protocol for the most recent evidence on ruminant infectious disease frequency and disease-associated mortality: Ethiopia as a case study. 为反刍动物传染病频率和疾病相关死亡率的最新证据制定系统绘图审查协议:以埃塞俄比亚为例。
IF 4.3 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2020-06-01 Epub Date: 2020-09-07 DOI: 10.1017/S1466252319000203
Theodora K Tsouloufi, Louise M Donnison, Karen L Smyth, Andrew R Peters

Almost 19% of the GDP of Ethiopia results from livestock production. Ruminants, in particular, form the majority of the national herd and are a critical source of income for smallholder farmers. Infectious diseases have been identified as a major cause of reduced livestock productivity in low- and middle-income countries (LMICs); therefore, a sound and comprehensive understanding of the relevant evidence would be beneficial in order to enable decision making on disease control policies. However, livestock disease data from sub-Saharan Africa is variable and disparate, which poses a challenge for evidence synthesis. This paper describes a protocol for a systematic mapping review of the recent available evidence on ruminant disease prevalence and associated mortality in Ethiopia. Literature sources will be identified using database search strategies. The titles, abstracts and, subsequently, full texts will be screened for inclusion based on predefined eligibility criteria. Specific data will be extracted and a preliminary qualitative assessment of the evidence will be performed using predefined indicators. The planned systematic map will be the first to provide a large-scale overview of the available ruminant disease evidence in Ethiopia; the final output will be an interactive dashboard tool to inform critical stakeholders in policy and research.

埃塞俄比亚近 19% 的国内生产总值来自畜牧业生产。反刍动物尤其占全国畜群的大多数,是小农收入的重要来源。传染病已被确定为导致中低收入国家(LMICs)畜牧业生产率下降的主要原因;因此,对相关证据进行充分和全面的了解将有助于疾病控制政策的决策制定。然而,撒哈拉以南非洲地区的牲畜疾病数据多变且分散,这给证据综合带来了挑战。本文介绍了对埃塞俄比亚反刍动物疾病流行率和相关死亡率的最新可用证据进行系统绘图审查的方案。将使用数据库搜索策略确定文献来源。将根据预先确定的资格标准对标题、摘要以及随后的全文进行筛选。将提取具体数据,并使用预定指标对证据进行初步定性评估。计划中的系统地图将是第一个对埃塞俄比亚现有反刍动物疾病证据进行大规模概述的地图;最终产出将是一个交互式仪表板工具,为政策和研究方面的重要利益相关者提供信息。
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引用次数: 0
Non-antibiotic approaches for disease prevention and control in beef and veal production: a scoping review. 牛肉和小牛肉生产中疾病预防和控制的非抗生素方法:范围综述。
IF 4.3 2区 农林科学 Q1 VETERINARY SCIENCES Pub Date : 2019-12-01 DOI: 10.1017/S1466252319000252
Lee V Wisener, Jan M Sargeant, Annette M O'Connor, Terri L O'Sullivan, Scott A McEwen, Andrea Nwosu, Tanya M Rossi

Livestock producers are encouraged to reduce the use of antibiotics belonging to classes of medical importance to humans. We conducted a scoping review on non-antibiotic interventions in the form of products or management practices that could potentially reduce the need for antibiotics in beef and veal animals living under intensive production conditions. Our objectives were to systematically describe the research on this broad topic, identify specific topics that could feasibly support systematic reviews, and identify knowledge gaps. Multiple databases were searched. Two reviewers independently screened and charted the data. From the 13,598 articles screened, 722 relevant articles were charted. The number of relevant articles increased steadily from 1990. The Western European research was dominated by veal production studies whereas the North American research was dominated by beef production studies. The interventions and outcomes measured were diverse. The four most frequent interventions included non-antibiotic feed additives, vaccinations, breed type, and feed type. The four most frequent outcomes were indices of immunity, non-specific morbidity, respiratory disease, and mortality. There were seven topic areas evaluated in clinical trials that may share enough commonality to support systemic reviews. There was a dearth of studies in which interventions were compared to antibiotic comparison groups.

鼓励牲畜生产者减少使用对人类具有重要医学意义的抗生素。我们对产品或管理实践形式的非抗生素干预措施进行了范围审查,这些措施可能会减少生活在集约化生产条件下的牛肉和小牛肉对抗生素的需求。我们的目标是系统地描述关于这个广泛主题的研究,确定可以支持系统综述的具体主题,并确定知识差距。检索了多个数据库。两位审稿人独立筛选并绘制了数据图表。从筛选的13598篇文章中,722篇相关文章被绘制成图表。自1990年以来,有关文章的数量稳步增加。西欧的研究以小牛肉生产研究为主,而北美的研究以牛肉生产研究为主。测量的干预措施和结果是多种多样的。四种最常见的干预措施包括非抗生素饲料添加剂、疫苗接种、品种类型和饲料类型。四种最常见的结果是免疫指标、非特异性发病率、呼吸系统疾病和死亡率。在临床试验中评估了七个主题领域,它们可能有足够的共性来支持系统评价。缺乏将干预措施与抗生素对照组进行比较的研究。
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引用次数: 0
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