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Advanced deep learning algorithms in oral cancer detection: Techniques and applications. 口腔癌检测中的高级深度学习算法:技术与应用。
IF 1.2 4区 环境科学与生态学 Q4 ENVIRONMENTAL SCIENCES Pub Date : 2025-01-17 DOI: 10.1080/26896583.2024.2445957
Dipali Wankhade, Chitra Dhawale, Mrunal Meshram

As the 16th most common cancer globally, oral cancer yearly accounts for some 355,000 new cases. This study underlines that an early diagnosis can improve the prognosis and cut down on mortality. It discloses a multifaceted approach to the detection of oral cancer, including clinical examination, biopsies, imaging techniques, and the incorporation of artificial intelligence and deep learning methods. This study is distinctive in that it provides a thorough analysis of the most recent AI-based methods for detecting oral cancer, including deep learning models and machine learning algorithms that use convolutional neural networks. By improving the precision and effectiveness of cancer cell detection, these models eventually make early diagnosis and therapy possible. This study also discusses the importance of techniques in image pre-processing and segmentation in improving image quality and feature extraction, an essential component of accurate diagnosis. These techniques have shown promising results, with classification accuracies reaching up to 97.66% in some models. Integrating the conventional methods with the cutting-edge AI technologies, this study seeks to advance early diagnosis of oral cancer, thus enhancing patient outcomes and cutting down on the burden this disease is imposing on healthcare systems.

口腔癌是全球第16大最常见的癌症,每年约有35.5万新病例。本研究强调早期诊断可以改善预后,降低死亡率。它公开了一种检测口腔癌的多方面方法,包括临床检查、活检、成像技术,以及人工智能和深度学习方法的结合。这项研究的独特之处在于,它全面分析了最新的基于人工智能的口腔癌检测方法,包括使用卷积神经网络的深度学习模型和机器学习算法。通过提高癌细胞检测的准确性和有效性,这些模型最终使早期诊断和治疗成为可能。本研究还讨论了图像预处理和分割技术在提高图像质量和特征提取方面的重要性,这是准确诊断的重要组成部分。这些技术已经显示出很好的效果,在一些模型中分类准确率达到了97.66%。该研究将传统方法与尖端人工智能技术相结合,旨在推进口腔癌的早期诊断,从而提高患者的治疗效果,减轻这种疾病给医疗系统带来的负担。
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引用次数: 0
Hepatotoxicity of usnic acid and underlying mechanisms. 烟酸的肝毒性及其潜在机制
IF 1.2 4区 环境科学与生态学 Q4 ENVIRONMENTAL SCIENCES Pub Date : 2025-01-01 Epub Date: 2024-06-21 DOI: 10.1080/26896583.2024.2366737
Si Chen, Zhen Ren, Lei Guo

Since usnic acid was first isolated in 1844 as a prominent secondary lichen metabolite, it has been used for various purposes worldwide. Usnic acid has been claimed to possess numerous therapeutic properties, including antimicrobial, anti-inflammatory, antiviral, anti-proliferative, and antipyretic activities. Approximately two decades ago, crude extracts of usnic acid or pure usnic acid were marketed in the United States as dietary supplements for aiding in weight loss as a "fat-burner" and gained popularity in the bodybuilding community; however, hepatotoxicity was documented for some usnic acid containing products. The US Food and Drug Administration (FDA) received numerous reports of liver toxicity associated with the use of dietary supplements containing usnic acid, leading the FDA to issue a warning letter in 2001 on a product, LipoKinetix. The FDA also sent a recommendation letter to the manufacturer of LipoKinetix, resulting in the withdrawal of LipoKinetix from the market. These events triggered investigations into the hepatotoxicity of usnic acid and its mechanisms. In 2008, we published a review article titled "Usnic Acid and Usnea Barbata Toxicity". This review is an updated version of our previous review article and incorporates additional data published since 2008. The purpose of this review is to provide a comprehensive summary of the understanding of the liver toxicity associated with usnic acid, with a particular focus on the current understanding of the putative mechanisms of usnic acid-related hepatotoxicity.

自从 1844 年首次分离出作为一种重要的地衣次生代谢物的鸟苷酸以来,鸟苷酸已在全球范围内被用于各种用途。据称,鸟苷酸具有多种治疗特性,包括抗菌、消炎、抗病毒、抗增殖和解热等活性。大约二十年前,美国市场上出现了作为 "脂肪燃烧剂 "帮助减肥的膳食补充剂的野葛根酸粗提取物或纯野葛根酸,并在健美界大受欢迎;然而,一些含有野葛根酸的产品出现了肝毒性。美国食品和药物管理局(FDA)收到了许多与使用含烟酸的膳食补充剂有关的肝脏毒性报告,导致 FDA 于 2001 年对一种名为 LipoKinetix 的产品发出了警告信。美国食品及药物管理局还向 LipoKinetix 的制造商发出了建议信,导致 LipoKinetix 退出市场。这些事件引发了对烟酸肝毒性及其机制的调查。2008 年,我们发表了一篇题为 "乌司尼酸和巴巴塔乌司尼酸毒性 "的综述文章。本综述是我们上一篇综述文章的更新版,并纳入了 2008 年以来发表的更多数据。本综述的目的是全面总结人们对与鸟苷酸有关的肝脏毒性的认识,尤其侧重于目前对鸟苷酸相关肝毒性假定机制的认识。
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引用次数: 0
An integrated computational and graphical approach for evaluating the geochemistry and health risks of nitrate-contaminated water for six age groups. 评估六个年龄组受硝酸盐污染的水的地球化学和健康风险的综合计算和图形方法。
IF 1.2 4区 环境科学与生态学 Q4 ENVIRONMENTAL SCIENCES Pub Date : 2025-01-01 Epub Date: 2024-12-22 DOI: 10.1080/26896583.2024.2436804
Johnbosco C Egbueri, Johnson C Agbasi, Mohamed ElKashouty, Mohd Yawar Ali Khan, Sani I Abba, Nazia Khan

Nitrate contamination in drinking water poses significant health risks, particularly in rapidly urbanizing areas of developing countries. This study presents an integrated computational and graphical approach to evaluate the geochemistry and health risks of nitrate-contaminated water for six age groups in Southeast, Nigeria. The research employed a detailed methodology combining water nutrient pollution index (WNPI), nitrate pollution index (NPI), water pollution index (WPI), geochemical plotting techniques, stoichiometry, and health risk computations. Water samples from several locations were analyzed for physicochemical parameters and nitrate concentrations. Results revealed predominantly acidic conditions and varying levels of nitrate contamination. Geochemical analysis indicated that silicate weathering and ion exchange processes were the primary influences on water chemistry. The WPI identified 14.29% of samples as "extremely polluted" (WPI > 1), while the WNPI classified 7.14% of samples as "moderately polluted" (WNPI > 1). However, the NPI categorized the samples as safe, indicating low nitrate inputs from anthropogenic sources. Health risk assessments indicated low-moderate risks, with the highest total hazard index of 0.839 for the 6-12 months age group; thus, higher vulnerability for infants. Oral exposure was found to be the dominant pathway, contributing over 99.90% to the total risk. This research provides crucial insights for achieving the Sustainable Development Goals (SDGs) related to water quality and public health protection. The integrated approach offers a robust framework for water resource management and interventions in risk-prone areas. Future research should focus on expanding the spatial coverage, incorporating sensitivity analyses, and exploring advanced technologies for real-time monitoring and predictive modeling of water quality.

饮用水中的硝酸盐污染构成重大的健康风险,特别是在发展中国家快速城市化的地区。本研究提出了一种综合计算和图形方法来评估尼日利亚东南部六个年龄组硝酸盐污染水的地球化学和健康风险。本研究采用水体养分污染指数(WNPI)、硝酸盐污染指数(NPI)、水污染指数(WPI)、地球化学标绘技术、化学计量学和健康风险计算相结合的详细方法。对几个地点的水样进行了理化参数和硝酸盐浓度分析。结果显示主要是酸性环境和不同程度的硝酸盐污染。地球化学分析表明,硅酸盐风化和离子交换过程是影响水化学的主要因素。WPI将14.29%的样本确定为“极度污染”(WPI >),而WNPI将7.14%的样本分类为“中度污染”(WNPI >)。然而,NPI将样本分类为安全,表明人为来源的硝酸盐输入量很低。健康风险评价为中低风险,6 ~ 12月龄总危险指数最高,为0.839;因此,婴儿的脆弱性更高。口腔暴露是主要途径,占总风险的99.90%以上。这项研究为实现与水质和公共健康保护有关的可持续发展目标提供了重要见解。综合方法为风险易发地区的水资源管理和干预措施提供了一个强有力的框架。未来的研究应注重扩大空间覆盖范围,结合敏感性分析,探索先进的水质实时监测和预测建模技术。
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引用次数: 0
Unlocking the potential of AI: Machine learning and deep learning models for predicting carcinogenicity of chemicals. 释放人工智能的潜力:预测化学品致癌性的机器学习和深度学习模型。
IF 1.2 4区 环境科学与生态学 Q4 ENVIRONMENTAL SCIENCES Pub Date : 2025-01-01 Epub Date: 2024-09-03 DOI: 10.1080/26896583.2024.2396731
Wenjing Guo, Jie Liu, Fan Dong, Huixiao Hong

The escalating apprehension surrounding the carcinogenic potential of chemicals emphasizes the imperative need for efficient methods of assessing carcinogenicity. Conventional experimental approaches such as in vitro and in vivo assays, albeit effective, suffer from being costly and time-consuming. In response to this challenge, new alternative methodologies, notably machine learning and deep learning techniques, have attracted attention for their potential in developing carcinogenicity prediction models. This article reviews the progress in predicting carcinogenicity using various machine learning and deep learning algorithms. A comparative analysis on these developed models reveals that support vector machine, random forest, and ensemble learning are commonly preferred for their robustness and effectiveness in predicting chemical carcinogenicity. Conversely, models based on deep learning algorithms, such as feedforward neural network, convolutional neural network, graph convolutional neural network, capsule neural network, and hybrid neural networks, exhibit promising capabilities but are limited by the size of available carcinogenicity datasets. This review provides a comprehensive analysis of current machine learning and deep learning models for carcinogenicity prediction, underscoring the importance of high-quality and large datasets. These observations are anticipated to catalyze future advancements in developing effective and generalizable machine learning and deep learning models for predicting chemical carcinogenicity.

围绕化学品致癌潜力的忧虑不断升级,这突出表明迫切需要高效的致癌评估方法。体外和体内检测等传统实验方法虽然有效,但成本高、耗时长。为应对这一挑战,新的替代方法,特别是机器学习和深度学习技术,因其在开发致癌性预测模型方面的潜力而备受关注。本文回顾了利用各种机器学习和深度学习算法预测致癌性的进展。对这些已开发模型的比较分析表明,支持向量机、随机森林和集合学习因其在预测化学品致癌性方面的稳健性和有效性而受到普遍青睐。相反,基于深度学习算法的模型,如前馈神经网络、卷积神经网络、图卷积神经网络、胶囊神经网络和混合神经网络,则表现出良好的性能,但受限于现有致癌数据集的规模。本综述全面分析了当前用于致癌性预测的机器学习和深度学习模型,强调了高质量和大型数据集的重要性。预计这些观察结果将推动未来在开发用于预测化学品致癌性的有效、可推广的机器学习和深度学习模型方面取得进展。
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引用次数: 0
Reconsideration of the health effects of monosodium glutamate: from bench to bedside evidence. 重新考虑味精对健康的影响:从工作台到床边的证据。
IF 1.2 4区 环境科学与生态学 Q4 ENVIRONMENTAL SCIENCES Pub Date : 2025-01-01 Epub Date: 2024-10-22 DOI: 10.1080/26896583.2024.2415202
Godswill J Udom, Babatunde R Abdulyekeen, Maryann O Osakwe, Anthonet N Ezejiofor, Chinna N Orish, Fortune C Orish, Chiara Frazzoli, Orish E Orisakwe

Monosodium glutamate (MSG) is a food additive that enhances the palatability of foods, thus its frequent use both domestically and industrially. Based on the dose-factor, frequency, and duration of exposure, MSG may provoke adverse health outcomes both in animals and humans. The present report aims at providing a comprehensive analysis of the scientifically proven untoward health effects of MSG. To achieve our aim, we adopted the PRISMA guidelines and checklist and searched four databases (Scopus, Web of Science, PubMed, and Google Scholar) from 2014 to 2024. Retrieved research papers were critically appraised for quality using the ARRIVE and Joanna Briggs (JB) checklists and data analysis was conducted via the narrative synthesis method. Our analysis reveals that though MSG is generally considered safe at low doses; however, high doses and repeated exposure to MSG are associated with embryotoxicity and teratogenicity, obesity, cardiotoxicity, hepatotoxicity, kidney toxicity, neurotoxicity, endothelial dysfunction, reproductive toxicities, alteration of lipid, and glucose metabolism. Thus, chronic exposure to MSG may be of human pathological importance. The findings of the present narrative synthesis provide a rationale for informed decisions on the use and labeling of this widely used food additive.

谷氨酸一钠(味精)是一种食品添加剂,可提高食品的适口性,因此在国内和工业上被频繁使用。根据接触味精的剂量系数、频率和持续时间,味精可能会对动物和人类的健康造成不良影响。本报告旨在全面分析经科学证实的味精对健康的不良影响。为实现这一目标,我们采用了 PRISMA 指南和核对表,并检索了 2014 年至 2024 年期间的四个数据库(Scopus、Web of Science、PubMed 和 Google Scholar)。我们使用 ARRIVE 和 Joanna Briggs (JB) 检查表对检索到的研究论文进行了严格的质量评估,并通过叙事综合法进行了数据分析。我们的分析表明,虽然一般认为低剂量的味精是安全的,但高剂量和反复接触味精与胚胎毒性和致畸性、肥胖、心脏毒性、肝毒性、肾毒性、神经毒性、内皮功能障碍、生殖毒性、脂质和葡萄糖代谢的改变有关。因此,长期接触味精可能会对人体产生重要的病理影响。本综述的研究结果为就这种广泛使用的食品添加剂的使用和标签问题做出知情决定提供了依据。
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引用次数: 0
An efficient enzymatic system for studying structure-carcinogenicity relationships: metabolism of pyrrolizidine alkaloids by human liver microsomes in the presence of calf thymus DNA, resulting in the formation of DNA adducts. 研究结构-致癌关系的高效酶系统:人肝微粒体在小牛胸腺 DNA 存在下对吡咯烷生物碱的新陈代谢,形成 DNA 加合物。
IF 1.2 4区 环境科学与生态学 Q4 ENVIRONMENTAL SCIENCES Pub Date : 2024-11-15 DOI: 10.1080/26896583.2024.2424091
Xiaobo He, Qingsu Xia, Matthew S Bryant, Peter P Fu

Pyrrolizidine alkaloids (PAs) form a family of toxic and carcinogenic phytochemicals found in plants worldwide. The metabolism of toxic PAs, both in vivo and in vitro, generates four (±)-6,7-dihydro-7-hydroxy-1-hydroxymethyl-5H-pyrrolizine (DHP)-derived DNA adducts, namely, DHP-dG-3, DHP-dG-4, DHP-dA-3, and DHP-dA-4, as documented in previous research. We have proposed that these DHP-DNA adducts play a pivotal role in the induction of liver tumor by PAs in rats and mice, serving as potential common biological biomarkers for PA exposure and carcinogenesis. In this study, we found that the metabolism of PAs and PA N-oxides by human liver microsomes, in the presence of calf thymus DNA, results in the formation of DNA adducts. This process serves as a convenient and biologically significant platform for investigating the structure-carcinogenicity relationships of PAs.

吡咯里西啶生物碱(Pyrrolizidine alkaloids,PAs)是一种有毒的致癌植物化学物质,存在于世界各地的植物中。有毒 PAs 在体内和体外代谢过程中会产生四种 (±)-6,7- 二氢-7-羟基-1-羟甲基-5H-吡咯烷(DHP)衍生的 DNA 加合物,即 DHP-dG-3、DHP-dG-4、DHP-dA-3 和 DHP-dA-4。我们提出,这些 DHP-DNA 加合物在 PA 诱导大鼠和小鼠肝脏肿瘤的过程中起着关键作用,是 PA 暴露和致癌的潜在共同生物标志物。在这项研究中,我们发现在小牛胸腺 DNA 存在的情况下,人肝脏微粒体对 PAs 和 PA N-oxides 的代谢会形成 DNA 加合物。这一过程为研究 PA 的结构-致癌性关系提供了一个方便且具有生物学意义的平台。
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引用次数: 0
Application of HepaRG cells for genotoxicity assessment: a review. 应用 HepaRG 细胞进行遗传毒性评估:综述。
IF 1.2 4区 环境科学与生态学 Q4 ENVIRONMENTAL SCIENCES Pub Date : 2024-01-01 Epub Date: 2024-04-02 DOI: 10.1080/26896583.2024.2331956
Xiaoqing Guo, Hannah Xu, Ji-Eun Seo

There has been growing interest in the use of human-derived metabolically competent cells for genotoxicity testing. The HepaRG cell line is considered one of the most promising cell models because it is TP53-proficient and retains many characteristics of primary human hepatocytes. In recent years, HepaRG cells, cultured in both a traditional two-dimensional (2D) format and as more advanced in-vivo-like 3D spheroids, have been employed in assays that measure different types of genetic toxicity endpoints, including DNA damage, mutations, and chromosomal damage. This review summarizes published studies that have used HepaRG cells for genotoxicity assessment, including cell model evaluation studies and risk assessment for various compounds. Both 2D and 3D HepaRG models can be adapted to several high-throughput genotoxicity assays, generating a large number of data points that facilitate quantitative benchmark concentration modeling. With further validation, HepaRG cells could serve as a unique, human-based new alternative methodology for in vitro genotoxicity testing.

人们对使用源于人类的代谢能力强的细胞进行遗传毒性测试越来越感兴趣。HepaRG 细胞系被认为是最有前途的细胞模型之一,因为它具有 TP53 特异性,并保留了原代人类肝细胞的许多特征。近年来,以传统二维(2D)格式和更先进的活体三维球形培养的 HepaRG 细胞已被用于检测不同类型的遗传毒性终点,包括 DNA 损伤、突变和染色体损伤。本综述总结了已发表的使用 HepaRG 细胞进行遗传毒性评估的研究,包括细胞模型评估研究和各种化合物的风险评估。二维和三维 HepaRG 模型均可适用于多种高通量遗传毒性检测,可生成大量数据点,便于建立定量基准浓度模型。经过进一步验证,HepaRG 细胞可作为一种独特的、基于人体的体外遗传毒性测试新替代方法。
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引用次数: 0
Metabolism and liver toxicity of cannabidiol. 大麻二酚的代谢和肝毒性。
IF 1.2 4区 环境科学与生态学 Q4 ENVIRONMENTAL SCIENCES Pub Date : 2024-01-01 Epub Date: 2024-06-21 DOI: 10.1080/26896583.2024.2366741
Si Chen, Yuxi Li, Xilin Li, Qiangen Wu, Montserrat Puig, Frederic Moulin, Jeremy Gingrich, Lei Guo

Increasing public interest has resulted in the widespread use of non-pharmaceutical cannabidiol (CBD) products. The sales of CBD products continue to rise, accompanied by concerns regarding unsubstantiated benefits, lack of product quality control, and potential health risks. Both animal and human studies have revealed a spectrum of toxicological effects linked to the use of CBD. Adverse effects related to exposure of humans to CBD include changes in appetite, gastrointestinal discomfort, fatigue, and elevated liver aminotransferase enzymes. Animal studies reported changes in organ weight, reproduction, liver function, and the immune system. This review centers on human-derived data, including clinical studies and in vitro investigations. Animal studies are also included when human data is not available. The objective is to offer an overview of CBD-related hepatotoxicity, metabolism, and potential CBD-drug interactions, thereby providing insights into the current understanding of CBD's impact on human health. It's important to note that this review does not serve as a risk assessment but seeks to summarize available information to contribute to the broader understanding of potential toxicological effects of CBD on the liver.

公众对大麻二酚(CBD)的兴趣与日俱增,导致非药物大麻二酚(CBD)产品得到广泛使用。大麻二酚产品的销售量持续上升,但与此同时,人们也对其未经证实的益处、缺乏产品质量控制以及潜在的健康风险表示担忧。动物和人体研究显示,使用 CBD 会产生一系列毒理效应。人体接触 CBD 后产生的不良反应包括食欲改变、肠胃不适、疲劳和肝脏转氨酶升高。动物研究报告了器官重量、繁殖、肝功能和免疫系统的变化。本综述以源自人类的数据为中心,包括临床研究和体外调查。在没有人类数据的情况下,也包括动物研究。目的是概述与 CBD 相关的肝脏毒性、新陈代谢以及 CBD 与药物之间潜在的相互作用,从而深入了解当前 CBD 对人体健康的影响。值得注意的是,本综述并不作为风险评估,而是旨在总结现有信息,帮助人们更广泛地了解 CBD 对肝脏的潜在毒理影响。
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引用次数: 0
Assessing the impact and mechanisms of environmental pollutants (heavy metals and pesticides) on the male reproductive system: a comprehensive review. 评估环境污染物(重金属和杀虫剂)对男性生殖系统的影响和机制:全面综述。
IF 2.5 4区 环境科学与生态学 Q4 ENVIRONMENTAL SCIENCES Pub Date : 2024-01-01 Epub Date: 2024-01-19 DOI: 10.1080/26896583.2024.2302738
Rohit Gautam, Eepsita Priyadarshini, Arbind Kumar Patel, Taruna Arora

The escalation of technological advancements, coupled with the increased use of hazardous chemicals, has emerged as a significant concern for human health. Exposure to environmental pollutants like heavy metals and pesticides (insecticides, herbicides and fungicides) is known to significantly contribute to various health problems, particularly affecting reproductive health. Disturbances in reproductive potential and reproductive toxicity in males are particularly worrisome. Existing literature suggests that exposure to these environmental pollutants significantly alters male reproductive parameters. Thus, it is imperative to thoroughly analyze, comprehend, and evaluate their impact on male reproductive toxicity. Oxidative stress and disruptions in redox equilibrium are major factors through which these pollutants induce changes in sperm parameters and affect the reproductive system. Insecticides, fungicides, and herbicides act as endocrine disruptors, interfering with the secretion and function of reproductive hormones such as testosterone and luteinizing hormone (LH), consequently impacting spermatogenesis. Additionally, heavy metals are reported to bio-accumulate in reproductive organs, acting as endocrine disruptors and triggering oxidative stress. The co-operative association of these pollutants can lead to severe damage. In this comprehensive review, we have conducted an in-depth analysis of the impact of these environmental pollutants on the male reproductive system, shedding light on the underlying mechanisms of action.

技术进步的升级,加上有害化学品使用的增加,已成为人类健康的一个重大问题。众所周知,接触重金属和杀虫剂(杀虫剂、除草剂和杀真菌剂)等环境污染物会导致各种健康问题,特别是影响生殖健康。男性生殖潜能紊乱和生殖毒性尤其令人担忧。现有文献表明,接触这些环境污染物会严重改变男性的生殖参数。因此,当务之急是彻底分析、理解和评估它们对男性生殖毒性的影响。氧化应激和氧化还原平衡的破坏是这些污染物引起精子参数变化并影响生殖系统的主要因素。杀虫剂、杀真菌剂和除草剂是内分泌干扰物,会干扰睾酮和黄体生成素(LH)等生殖激素的分泌和功能,从而影响精子的生成。此外,据报道,重金属会在生殖器官中生物累积,起到干扰内分泌和引发氧化应激的作用。这些污染物的共同作用可导致严重损害。在这篇综述中,我们深入分析了这些环境污染物对男性生殖系统的影响,揭示了其潜在的作用机制。
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引用次数: 0
Factors related to tumor response rate from TCGA three omics data-variants, expression, methylation. 从 TCGA 三项全局数据--变异、表达、甲基化--得出与肿瘤反应率相关的因素。
IF 1.2 4区 环境科学与生态学 Q4 ENVIRONMENTAL SCIENCES Pub Date : 2024-01-01 Epub Date: 2024-02-26 DOI: 10.1080/26896583.2024.2319010
Hyung-Min Ahn, Insu Park, Chang Geun Kim, Young Kyung Ko, Jeong-An Gim

The Cancer Genome Atlas (TCGA) and its patient-derived multi-omics datasets have been the backbone of cancer research, and with novel approaches, it continues to shed new insight into the disease. In this study, we delved into a method of multi-omics integration of patient datasets and the association of biological pathways related to the disease. First, across thirty-three types of cancer present in TCGA, we merged genomic mutations and drug response datasets and filtered for the viable variant-drug response combinations available in TCGA, containing more than three samples for each drug response label with RNA sequencing (RNA-seq) and genomic methylation data available for each patient. We identified two distinct combinations in TCGA, one being pancreatic adenocarcinoma patients with/without rs121913529 variant in KRAS gene treated with gemcitabine, and the other low-grade glioma with/without rs121913500 variant in IDH1 gene administered with temozolomide. In these two groups, different patterns of gene expression were observed in the pathways often associated with cancer progression, such as mTOR and PDGF between the patients with complete response and progressive disease. Our result will provide yet another example of the relevance of these biological pathways in cancer drug response and a way for multi-omics integration in cancer datasets.

癌症基因组图谱(TCGA)及其源自患者的多组学数据集一直是癌症研究的中坚力量,通过新方法,它不断揭示出癌症的新见解。在这项研究中,我们深入研究了患者数据集的多组学整合方法以及与疾病相关的生物通路的关联。首先,在TCGA中的33种癌症中,我们合并了基因组突变和药物反应数据集,筛选出TCGA中可行的变异-药物反应组合,每个药物反应标签包含三个以上样本,每个患者都有RNA测序(RNA-seq)和基因组甲基化数据。我们在 TCGA 中发现了两种不同的组合,一种是 KRAS 基因中含有/不含有 rs121913529 变异的胰腺癌患者接受吉西他滨治疗,另一种是 IDH1 基因中含有/不含有 rs121913500 变异的低级别胶质瘤患者接受替莫唑胺治疗。在这两组患者中,观察到完全反应患者和进展期患者在通常与癌症进展相关的通路(如 mTOR 和 PDGF)上有不同的基因表达模式。我们的研究结果将再次证明这些生物通路与癌症药物反应的相关性,并为癌症数据集的多组学整合提供一种方法。
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引用次数: 0
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Journal of Environmental Science and Health Part C-Toxicology and Carcinogenesis
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