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The holism of evolution as consciousness 作为意识的进化的整体性
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-29 DOI: 10.1016/j.pbiomolbio.2024.01.004
John S. Torday

Quantum Entanglement has been hypothesized to mediate non-local consciousness, underlying which, empirically, is the force of gravity. Upon further reflection, the case can be made for ‘the breath’ as the physiologic trait that binds all of these properties together, offering further opportunity for hypothesis testing experimentation. Humans have inexplicably made extraordinary intellectual and technical advances within a relatively very short period of time, referred to as the ‘great leap forward’. It would be of great value if we could identify how and why we have evolved so rapidly. There is a holotropism that begins with the Big Bang that is centered on the homeostatic control of energy, perpetually referencing the First Principles of Physiology. “The Breath” is how and why our physiology has managed to perpetuate our species, and perhaps why the lung has been ‘over-engineered’ in order to facilitate the role of breathing in consciousness.

量子纠缠被假定为非局域意识的中介,从经验上看,非局域意识的基础是万有引力。经过进一步思考,"呼吸 "可以说是将所有这些特性结合在一起的生理特征,从而为假设检验实验提供了更多机会。人类在相对较短的时间内取得了令人费解的非凡的智力和技术进步,被称为 "大跃进"。如果我们能够确定人类是如何以及为什么会进化得如此迅速,那将是非常有价值的。从宇宙大爆炸开始,就有一个以能量的平衡控制为中心的整体论,这个整体论永远参照生理学的第一原理。呼吸 "是我们的生理学如何以及为什么能够延续我们的物种,或许也是为什么肺被 "过度设计",以促进呼吸在意识中的作用。
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引用次数: 0
A landscape of consciousness: Toward a taxonomy of explanations and implications 意识的景观:意识的景观:解释和影响的分类法。
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-26 DOI: 10.1016/j.pbiomolbio.2023.12.003
Robert Lawrence Kuhn

Diverse explanations or theories of consciousness are arrayed on a roughly physicalist-to-nonphysicalist landscape of essences and mechanisms. Categories: Materialism Theories (philosophical, neurobiological, electromagnetic field, computational and informational, homeostatic and affective, embodied and enactive, relational, representational, language, phylogenetic evolution); Non-Reductive Physicalism; Quantum Theories; Integrated Information Theory; Panpsychisms; Monisms; Dualisms; Idealisms; Anomalous and Altered States Theories; Challenge Theories. There are many subcategories, especially for Materialism Theories. Each explanation is self-described by its adherents, critique is minimal and only for clarification, and there is no attempt to adjudicate among theories. The implications of consciousness explanations or theories are assessed with respect to: meaning/purpose/value (if any); AI consciousness; virtual immortality; and survival beyond death. A Landscape of Consciousness, I suggest, offers perspective.

关于意识的各种解释或理论,大致从物理主义到非物理主义的本质和机制。类别:唯物主义理论(哲学、神经生物学、电磁场、计算与信息、同态与情感、具身与能动、关系、表征、语言、系统进化);非演绎物理主义;量子理论;综合信息理论;泛心理主义;一元论;二元论;理想主义;超自然与改变状态理论;挑战理论。还有许多子类别,尤其是唯物主义理论。每种解释都由其拥护者自我描述,批评很少,只是为了澄清,而且没有试图对各种理论进行裁决。对意识类别的解释或理论的影响进行了评估,涉及:意义/目的/价值(如果有的话);人工智能意识;虚拟永生;以及超越死亡的生存。我认为,意识景观提供了一种视角。
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引用次数: 0
Promising application of pulsed electromagnetic fields on tissue repair and regeneration 脉冲电磁场在组织修复和再生方面的应用前景广阔。
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-26 DOI: 10.1016/j.pbiomolbio.2024.01.003
Dan-bo Su, Zi-xu Zhao, Da-chuan Yin, Ya-jing Ye

Tissue repair and regeneration is a vital biological process in organisms, which is influenced by various internal mechanisms and microenvironments. Pulsed electromagnetic fields (PEMFs) are becoming a potential medical technology due to its advantages of effectiveness and non-invasiveness. Numerous studies have demonstrated that PEMFs can stimulate stem cell proliferation and differentiation, regulate inflammatory reactions, accelerate wound healing, which is of great significance for tissue regeneration and repair, providing a solid basis for enlarging its clinical application. However, some important issues such as optimal parameter system and potential deep mechanisms remain to be resolved due to PEMFs window effect and biological complexity. Thus, it is of great importance to comprehensively summarizing and analyzing the literature related to the biological effects of PEMFs in tissue regeneration and repair. This review expounded the biological effects of PEMFs on stem cells, inflammation response, wound healing and musculoskeletal disorders in order to improve the application value of PEMFs in medicine. It is believed that with the continuous exploration of biological effects of PEMFs, it will be applied increasingly widely to tissue repair and other diseases.

组织修复和再生是生物体内的一个重要生理过程,受到各种内部机制和微环境的影响。脉冲电磁场(PEMFs)因其有效和无创的优势,正成为一种潜在的医疗技术。大量研究表明,脉冲电磁场能刺激干细胞增殖和分化,调节炎症反应,加速伤口愈合,对组织再生和修复具有重要意义,为扩大其临床应用提供了坚实的基础。然而,由于 PEMFs 的窗口效应和生物学的复杂性,一些重要问题如最佳参数系统和潜在的深层机制仍有待解决。因此,全面总结和分析 PEMFs 在组织再生和修复中的生物学效应相关文献具有重要意义。本综述阐述了 PEMFs 对干细胞、炎症反应、伤口愈合和肌肉骨骼疾病的生物学效应,以期提高 PEMFs 在医学中的应用价值。相信随着对 PEMFs 生物效应的不断探索,它将越来越广泛地应用于组织修复和其他疾病的治疗。
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引用次数: 0
Amyloid oligomers and their membrane toxicity - A perspective study 淀粉样蛋白寡聚体及其膜毒性--一项透视研究
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-10 DOI: 10.1016/j.pbiomolbio.2024.01.002
Alessandro Nutini

Amyloidosis is a condition involving a disparate group of pathologies characterized by the extracellular deposition of insoluble fibrils composed of broken-down proteins. These proteins can accumulate locally, causing peculiar symptoms, or in a widespread way, involving many organs and.

causing severe systemic failure. The damage that is created is related not only to the accumulation of.

amyloid fibrils but above all to the precursor oligomers of the fibrils that manage to enter the cell in a very particular way. This article analyzes the current state of research related to the entry of these oligomers into the cell membrane and the theories related to their toxicity. The paper proposed here not only aims to review the contents in the literature but also proposes a new vision of amyloid toxicity.

that could occur in a multiphase process catalyzed by the cell membrane itself. In this process, the denaturation of the lipid bilayer is followed by the stabilization of a pore through energetically favorable self-assembly processes which are achieved through particular oligomeric structures.

淀粉样变性是一种涉及不同病理类型的疾病,其特征是由分解蛋白质组成的不溶性纤维在细胞外沉积。这些蛋白质可以在局部积聚,引起特殊症状,也可以大范围积聚,累及多个器官,造成严重的全身衰竭。所造成的损害不仅与淀粉样蛋白纤维的堆积有关,而且首先与以非常特殊的方式进入细胞的纤维前体低聚物有关。本文分析了与这些低聚物进入细胞膜有关的研究现状,以及与它们的毒性有关的理论。本文不仅回顾了文献内容,还提出了淀粉样蛋白毒性的新观点,即淀粉样蛋白毒性可能发生在细胞膜本身催化的多相过程中。在这一过程中,脂质双分子层变性后,通过能量上有利的自组装过程稳定了一个孔道,该孔道是通过特殊的低聚物结构实现的。
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引用次数: 0
Editorial for online collection — The gene: An appraisal 在线收藏编辑 - 基因:评价
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-03 DOI: 10.1016/j.pbiomolbio.2024.01.001
Denis Noble
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引用次数: 0
Darwinian evolution has become dogma; AI can rescue what is salvageable 达尔文进化论已成为教条;人工智能可拯救可拯救的东西
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.pbiomolbio.2023.12.001
Olen R. Brown , David A. Hullender

Artificial Intelligence (AI), as an academic discipline, is traceable to the mid-1950s but it is currently exploding in applications with successes and concerns. AI can be defined as intelligence demonstrated by computers, with intelligence difficult to define but it must include concepts of ability to learn, reason, and generalize from a vast amount of information and, we propose, to infer meaning. The type of AI known as general AI, has strong, but unrealized potential both for assessing and also for solving major problems with the scientific theory of Darwinian evolution, including its modern variants and for origin of life studies. Specifically, AI should be applied first to evaluate the strengths and weaknesses of the assumptions and empirical information underpinning theories of the origin of life and probability of its evolution. AI should then be applied to assess the scientific validity of the theory of how abundant life came to be on earth.

人工智能(AI)作为一门学术学科,可追溯到 20 世纪 50 年代中期,但目前它的应用正呈爆炸式增长,既有成功,也有隐忧。人工智能可以定义为计算机所表现出的智能,智能很难定义,但必须包括从大量信息中学习、推理和概括的能力,以及我们提出的推断意义的能力等概念。被称为 "通用人工智能 "的人工智能在评估和解决达尔文进化论(包括其现代变体)中的重大问题以及生命起源研究方面具有强大的潜力,但这种潜力尚未实现。具体来说,人工智能应首先用于评估生命起源及其进化概率理论所依据的假设和经验信息的优缺点。然后,应用人工智能来评估关于地球上如何出现丰富生命的理论的科学有效性。
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引用次数: 0
Music, cells and the dimensionality of nature 音乐、细胞和自然的维度
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.pbiomolbio.2023.11.006
Mark William Johnson

One of the foundational principles of recent developments in evolutionary biology has been the acknowledgement of homeostasis as an organising principle of cellular development from unicellular origins. Fundamentally, this concerns the balance between the inside of a biological entity and its environment. Given that the organ of balance is the ear, and that the evolutionary provenance of the vestibular system can be traced back to fish, music provides a rich foundation for evolutionary biological inquiry.

This paper considers a specific dimensional relationship in sonic experience between noise, signal, redundancy and anticipation. Drawing on the physics of Bohm and more recent developments in Rowlands's nilpotent quantum mechanics, I argue that the relationship between these four parameters is not only that they represent aspects of sonic experience, but that they are dimensionally distinct, where noise can be considered to be scalar, a signal (or a note) is a vector (having magnitude and direction), redundancy is bi-vectorial (involving degrees of repetition of signals over time), and anticipation is tri-vectorial (involving reflexive consideration of different orders of redundancy).

In outlining the dimensional distinction between these variables, an analysis is presented which considers the relationship between the Shannon entropy of different dimensions in music. This shows that the entropy of noise has a particular bearing on the entropy of the other dimensions. This dimensional relation is also reflected in biological evidence, where Torday has shown there to be a direct correlation between the effect of gravitational “noise” on cellular communication, and by extension the evolution of consciousness.

进化生物学最新发展的基本原则之一是承认平衡是单细胞起源的细胞发展的组织原则。从根本上说,这涉及生物实体内部与其环境之间的平衡。鉴于平衡器官是耳朵,而前庭系统的进化起源可以追溯到鱼类,因此音乐为生物进化研究提供了丰富的基础。本文探讨了声音体验中噪音、信号、冗余和预期之间的特定维度关系。借鉴博姆物理学和罗兰兹(Rowlands)零势量子力学的最新发展,我认为这四个参数之间的关系不仅代表了声波体验的各个方面,而且在维度上是截然不同的、其中,噪音可被视为标量,信号(或音符)是矢量(具有大小和方向),冗余是双矢量(涉及信号随时间重复的程度),而预期是三矢量(涉及对不同冗余顺序的反射性考虑)。在概述这些变量之间的维度区别时,我们分析了音乐中不同维度的香农熵之间的关系。这表明,噪音熵对其他维度的熵有特殊影响。这种维度关系也反映在生物学证据中,托尔戴证明重力 "噪音 "对细胞通信的影响与意识进化之间存在直接关联。
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引用次数: 0
The mobius strip, the cell, and soft logic mathematics 莫比乌斯带、单元格和软逻辑数学
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.pbiomolbio.2023.12.002
John S. Torday, Moshe Klein , Oded Maimon

The cell-cell signaling mechanisms that are the basis for all of physiology have been used to trace evolution back to the unicellular state, and beyond, to the “First Principles of Physiology”. And since our physiology derives from the Cosmos based on Symbiogenesis, it has been hypothesized that the cell behaves like a functional Mobius Strip, having no ‘inside or outside’ cell membrane surface - it is continuous with the Cosmos, its history being codified from Quantum Entanglement to Newtonian Mechanics, affording the cell consciousness and unconsciousness/subconsciousness as a continuum for the first time. Similarly, Klein and Maimon have concluded that their ‘Soft Logic’ mathematics also constitutes a Mobius Strip, using both a real number axis, combined with a zero axis, numerically representing cognition. This is congruent with the cell as ‘two-tiered’ consciousness, the first tier being the real-time interface between the cell membrane and its environment; the second tier constituting integrated physiology, referencing the consciousness of the Cosmos. Thus, there is coherence between physiology, consciousness and mathematics for the first time.

作为所有生理学基础的细胞-细胞信号传递机制被用来追溯到单细胞状态的进化,进而追溯到 "生理学第一原理"。由于我们的生理学来源于以共生为基础的宇宙,因此有人假设,细胞的行为就像一个功能性的莫比乌斯带,没有 "内部或外部 "的细胞膜表面--它与宇宙是连续的,其历史从量子纠缠到牛顿力学都被编成了法典,使细胞意识和无意识/潜意识首次成为一个连续体。同样,克莱因和迈蒙认为,他们的 "软逻辑 "数学也构成了莫比乌斯带,既使用实数轴,又使用零轴,在数字上代表认知。这与细胞作为 "双层 "意识是一致的,第一层是细胞膜与环境之间的实时界面;第二层是综合生理学,指的是宇宙意识。因此,生理学、意识和数学之间首次出现了一致性。
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引用次数: 0
Corrigendum to “The gene: An appraisal” [Prog. Biophys. Mol. Biol. (2021) 46–62] “基因:一种评估”的勘误表[Prog。Biophys。摩尔。杂志。(2021) 46 - 62]
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.pbiomolbio.2023.11.002
Keith Baverstock
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引用次数: 0
The Gene: An appraisal 基因:评估。
IF 3.8 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-01 DOI: 10.1016/j.pbiomolbio.2023.11.001
Keith Baverstock

The gene can be described as the foundational concept of modern biology. As such, it has spilled over into daily discourse, yet it is acknowledged among biologists to be ill-defined. Here, following a short history of the gene, I analyse critically its role in inheritance, evolution, development, and morphogenesis. Wilhelm Johannsen's genotype-conception, formulated in 1910, has been adopted as the foundation stone of genetics, giving the gene a higher degree of prominence than is justified by the evidence. An analysis of the results of the Long-Term Evolution Experiment (LTEE) with E. coli bacteria, grown over 60,000 generations, does not support spontaneous gene mutation as the source of variance for natural selection. From this it follows that the gene is not Mendel's unit of inheritance: that must be Johannsen's transmission-conception at the gamete phenotype level, a form of inheritance that Johannsen did not consider. Alternatively, I contend that biology viewed on the bases of thermodynamics, complex system dynamics, and self-organisation, provides a new framework for the foundations of biology. In this framework, the gene plays a passive role as a vital information store: it is the phenotype that plays the active role in inheritance, evolution, development, and morphogenesis.

基因可以说是现代生物学的基本概念。因此,它已经蔓延到日常话语中,但生物学家认为它定义不清。在这里,随着基因的短暂历史,我批判性地分析了它在遗传、进化、发展和形态发生中的作用。威廉·约翰森于1910年提出的基因型概念,已被采纳为遗传学的基石,赋予基因比证据所证明的更高的突出程度。一项对大肠杆菌长期进化实验(LTEE)结果的分析表明,经过6万多代的生长,自发的基因突变并不能作为自然选择的变异来源。由此可见,基因不是孟德尔的遗传单位:那一定是约翰森在配子表型水平上的传递概念,这是约翰森没有考虑到的一种遗传形式。另外,我认为基于热力学、复杂系统动力学和自组织的生物学为生物学的基础提供了一个新的框架。在这个框架中,基因作为一个重要的信息存储起着被动的作用;表现型在遗传、进化、发育和形态发生中起着积极的作用。
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引用次数: 0
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Progress in Biophysics & Molecular Biology
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