Megan M Flanagan, Hannah J Stottlemyre, Caitlin R Gabor
There is a large body of evidence linking increased noise to negative health effects for animals. Anthropogenic noise induces behavioral and physiological reactions across a range of taxa and increased traffic noise affects glucocorticoid (GC) hormones associated with the stress response in amphibians. GCs help to maintain homeostasis while balancing energetic trade-offs between reproduction, growth, and activity. Stressors during early development can impact fitness at later life stages. We measured growth, activity, and GCs in response to high levels of traffic noise in two tadpole species that differ in life history: Acris crepitans and Rana berlandieri. We predicted that earlier exposures to traffic noise will slow down the development and alter the behavior and GC concentrations differently than later exposures. Subjects were initially either exposed to natural levels of traffic noise for 8 days (early exposure) or a white noise control (later exposure), then the treatment was switched. Activity was measured via focal sampling and tadpoles were categorized as active if movement was detected. Tadpoles exposed to white noise initially maintained mass and activity throughout the experiment and early exposure to traffic noise had a greater impact on mass, activity, and GCs. Tadpoles exposed to traffic noise initially lost mass, with A. crepitans regaining mass but not R. berlandieri. When exposed earlier to traffic noise, R. berlandieri increased movement when shifted to the white noise treatment while A. crepitans did not significantly change activity. Acris creptians had higher corticosterone release rates compared to R. berlandieri, and in both species, release rates were higher for tadpoles exposed to noise earlier. The longer-lived R. berlandieri allocated more of their energetic resources into activity, while the shorter-lived A. crepitans allocated energy toward growth. Rana berlandieri and A. crepitans utilized different coping strategies to contend with early exposure to traffic noise, potentially due to differences in life histories. Our findings suggest that these tadpoles employ different coping mechanisms to modulate stress responses in noise-polluted environments, and these mechanisms could influence their fitness later in life. Further study is needed to understand the impact in more sensitive tadpole species.
{"title":"Traffic Noise Impacts Glucocorticoid Response, Activity, and Growth in Two Species of Tadpoles.","authors":"Megan M Flanagan, Hannah J Stottlemyre, Caitlin R Gabor","doi":"10.1093/icb/icae032","DOIUrl":"10.1093/icb/icae032","url":null,"abstract":"<p><p>There is a large body of evidence linking increased noise to negative health effects for animals. Anthropogenic noise induces behavioral and physiological reactions across a range of taxa and increased traffic noise affects glucocorticoid (GC) hormones associated with the stress response in amphibians. GCs help to maintain homeostasis while balancing energetic trade-offs between reproduction, growth, and activity. Stressors during early development can impact fitness at later life stages. We measured growth, activity, and GCs in response to high levels of traffic noise in two tadpole species that differ in life history: Acris crepitans and Rana berlandieri. We predicted that earlier exposures to traffic noise will slow down the development and alter the behavior and GC concentrations differently than later exposures. Subjects were initially either exposed to natural levels of traffic noise for 8 days (early exposure) or a white noise control (later exposure), then the treatment was switched. Activity was measured via focal sampling and tadpoles were categorized as active if movement was detected. Tadpoles exposed to white noise initially maintained mass and activity throughout the experiment and early exposure to traffic noise had a greater impact on mass, activity, and GCs. Tadpoles exposed to traffic noise initially lost mass, with A. crepitans regaining mass but not R. berlandieri. When exposed earlier to traffic noise, R. berlandieri increased movement when shifted to the white noise treatment while A. crepitans did not significantly change activity. Acris creptians had higher corticosterone release rates compared to R. berlandieri, and in both species, release rates were higher for tadpoles exposed to noise earlier. The longer-lived R. berlandieri allocated more of their energetic resources into activity, while the shorter-lived A. crepitans allocated energy toward growth. Rana berlandieri and A. crepitans utilized different coping strategies to contend with early exposure to traffic noise, potentially due to differences in life histories. Our findings suggest that these tadpoles employ different coping mechanisms to modulate stress responses in noise-polluted environments, and these mechanisms could influence their fitness later in life. Further study is needed to understand the impact in more sensitive tadpole species.</p>","PeriodicalId":54971,"journal":{"name":"Integrative and Comparative Biology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2024-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140909134","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
For most species, the factors that determine geographical range limits are unknown. In mesic-adapted species, populations occurring near the edge of the species' distribution provide ideal study systems to investigate what limits distributional ranges. We aimed to identify the abiotic constraints that preclude an east-Australian mesic-adapted lizard (Lampropholis delicata) from occupying arid environments. We performed lizard surveys at sites spanning an elevation/aridity gradient (380-1070 m) and measured the prevalence of habitat features (logs, rocks, leaf litter, bare ground, solar radiation) in addition to hourly temperatures in a variety of microhabitats available to lizards. Species distribution models (SDM) were used to identify the macroclimatic variables limiting the species' distribution. At its inland range limit, L. delicata is associated with mesic high-elevation forests with complex microhabitat structures, which gradually decline in availability toward lower (and more arid) elevations where the species is absent. Moreover, L. delicata is absent from sites with a shallow leaf litter layer, in which daily temperatures exceed the species' thermal preference range, which we determined in a laboratory thermal gradient. In regards to macroclimate, SDM revealed that temperature seasonality is the primary variable predicting the species' distribution, suggesting that L. delicata avoids inland areas owing to their high annual thermal variability. By combining multiple lines of evidence, this research highlights that habitat and microclimate suitability-not solely macroclimate suitability-are important range-limiting factors for mesic ectotherms and should be incorporated in studies addressing range-limiting hypotheses.
{"title":"Identifying the abiotic factors that determine the inland range limits of a mesic-adapted lizard species.","authors":"Jules E Farquhar, Wyn Russell, David G Chapple","doi":"10.1093/icb/icad124","DOIUrl":"10.1093/icb/icad124","url":null,"abstract":"<p><p>For most species, the factors that determine geographical range limits are unknown. In mesic-adapted species, populations occurring near the edge of the species' distribution provide ideal study systems to investigate what limits distributional ranges. We aimed to identify the abiotic constraints that preclude an east-Australian mesic-adapted lizard (Lampropholis delicata) from occupying arid environments. We performed lizard surveys at sites spanning an elevation/aridity gradient (380-1070 m) and measured the prevalence of habitat features (logs, rocks, leaf litter, bare ground, solar radiation) in addition to hourly temperatures in a variety of microhabitats available to lizards. Species distribution models (SDM) were used to identify the macroclimatic variables limiting the species' distribution. At its inland range limit, L. delicata is associated with mesic high-elevation forests with complex microhabitat structures, which gradually decline in availability toward lower (and more arid) elevations where the species is absent. Moreover, L. delicata is absent from sites with a shallow leaf litter layer, in which daily temperatures exceed the species' thermal preference range, which we determined in a laboratory thermal gradient. In regards to macroclimate, SDM revealed that temperature seasonality is the primary variable predicting the species' distribution, suggesting that L. delicata avoids inland areas owing to their high annual thermal variability. By combining multiple lines of evidence, this research highlights that habitat and microclimate suitability-not solely macroclimate suitability-are important range-limiting factors for mesic ectotherms and should be incorporated in studies addressing range-limiting hypotheses.</p>","PeriodicalId":54971,"journal":{"name":"Integrative and Comparative Biology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2024-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11277862/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49685153","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Correction to: Chemical Communication in Lizards and a Potential Role for Vasotocin in Modulating Social Interactions.","authors":"","doi":"10.1093/icb/icae006","DOIUrl":"10.1093/icb/icae006","url":null,"abstract":"","PeriodicalId":54971,"journal":{"name":"Integrative and Comparative Biology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2024-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140144695","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Correction to: Scaling Relationships among the Mass of Eggshell, Albumen, and Yolk in Six Precocial Birds.","authors":"","doi":"10.1093/icb/icae116","DOIUrl":"10.1093/icb/icae116","url":null,"abstract":"","PeriodicalId":54971,"journal":{"name":"Integrative and Comparative Biology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2024-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141762763","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Russell H Ward, Thomas P Quinn, Andrew H Dittman, Kara E Yopak
Pacific salmon (Oncorhynchus spp.) hatch and feed in freshwater habitats, migrate to sea to mature, and return to spawn at natal sites. The final, riverine stages of the return migrations are mediated by chemical properties of the natal stream that they learned as juveniles. Like some other fish, salmon growth is asymptotic; they grow continuously throughout life toward a maximum size. The continued growth of the nervous system may be plastic in response to environmental variables. Due to the ecological, cultural, and economic importance of Pacific salmon, individuals are often reared in hatcheries and released into the wild as juveniles to supplement natural populations. However, hatchery-reared individuals display lower survivorship and may also stray (i.e., spawn in a non-natal stream) at higher rates than their wild counterparts. Hatchery environments may lack stimuli needed to promote normal development of the nervous system, thus leading to behavioral deficits and a higher incidence of straying. This study compared the peripheral olfactory system and brain organization of hatchery-reared and wild-origin sockeye salmon fry (Oncorhynchus nerka). Surface area of the olfactory rosette, diameter of the olfactory nerve, total brain size, and size of major brain regions were measured from histological sections and compared between wild and hatchery-origin individuals. Hatchery-origin fish had significantly larger optic tecta, and marginally insignificant, yet noteworthy trends, existed in the valvula cerebelli (hatchery > wild) and olfactory bulbs (hatchery < wild). We also found a putative difference in olfactory nerve diameter (dmin) (hatchery > wild), but the validity of this finding needs further analyses with higher resolution methods. Overall, these results provide insight into the potential effects of hatchery rearing on nervous system development in salmonids, and may explain behavioral deficits displayed by hatchery-origin individuals post-release.
{"title":"The Effects of Rearing Environment on Organization of the Olfactory System and Brain of Juvenile Sockeye Salmon, Oncorhynchus nerka.","authors":"Russell H Ward, Thomas P Quinn, Andrew H Dittman, Kara E Yopak","doi":"10.1093/icb/icae002","DOIUrl":"10.1093/icb/icae002","url":null,"abstract":"<p><p>Pacific salmon (Oncorhynchus spp.) hatch and feed in freshwater habitats, migrate to sea to mature, and return to spawn at natal sites. The final, riverine stages of the return migrations are mediated by chemical properties of the natal stream that they learned as juveniles. Like some other fish, salmon growth is asymptotic; they grow continuously throughout life toward a maximum size. The continued growth of the nervous system may be plastic in response to environmental variables. Due to the ecological, cultural, and economic importance of Pacific salmon, individuals are often reared in hatcheries and released into the wild as juveniles to supplement natural populations. However, hatchery-reared individuals display lower survivorship and may also stray (i.e., spawn in a non-natal stream) at higher rates than their wild counterparts. Hatchery environments may lack stimuli needed to promote normal development of the nervous system, thus leading to behavioral deficits and a higher incidence of straying. This study compared the peripheral olfactory system and brain organization of hatchery-reared and wild-origin sockeye salmon fry (Oncorhynchus nerka). Surface area of the olfactory rosette, diameter of the olfactory nerve, total brain size, and size of major brain regions were measured from histological sections and compared between wild and hatchery-origin individuals. Hatchery-origin fish had significantly larger optic tecta, and marginally insignificant, yet noteworthy trends, existed in the valvula cerebelli (hatchery > wild) and olfactory bulbs (hatchery < wild). We also found a putative difference in olfactory nerve diameter (dmin) (hatchery > wild), but the validity of this finding needs further analyses with higher resolution methods. Overall, these results provide insight into the potential effects of hatchery rearing on nervous system development in salmonids, and may explain behavioral deficits displayed by hatchery-origin individuals post-release.</p>","PeriodicalId":54971,"journal":{"name":"Integrative and Comparative Biology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2024-07-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139906953","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Reaching and inspecting objects is an intricate part of human life, which is shared by a diversity of animals across phyla. In addition to appendages like legs and antennae, some insects use their mouthparts to reach and inspect targets. Hawkmoths of the family Sphingidae (Lepidoptera) use their extremely long and straw-like proboscis to drink nectar from flowers. As they approach flowers, hawkmoths uncoil their proboscis and explore the floral surface while hovering to target the proboscis to the nectary hole. Several sensory modalities provide feedback to control and guide these extremely versatile proboscis movements. The control task faced by the hawkmoths’ nervous system during such behaviors in not unlike that of an animal guiding limbs or a robotic agent guiding a manipulator to a target. Hawkmoths perform these reaching maneuvers while simultaneously hovering, and hence require rapid and continuous coordination between the proboscis, neck and and flight motor systems, thereby providing a unique invertebrate model for studying appendage guidance and reaching. Here, we review what is known about how hawkmoths use their proboscis for floral inspection and nectar discovery, as well as the role of various sensors in proboscis guidance. We give a brief overview of the morphology and muscular apparatus of the hawkmoth proboscis, and discuss how multimodal sensory feedback might be turned into motor action for appendage guidance.
{"title":"The hawkmoth proboscis: an insect model for sensorimotor control of reaching and exploration","authors":"Anna Stöckl, Tanvi Deora","doi":"10.1093/icb/icae123","DOIUrl":"https://doi.org/10.1093/icb/icae123","url":null,"abstract":"Reaching and inspecting objects is an intricate part of human life, which is shared by a diversity of animals across phyla. In addition to appendages like legs and antennae, some insects use their mouthparts to reach and inspect targets. Hawkmoths of the family Sphingidae (Lepidoptera) use their extremely long and straw-like proboscis to drink nectar from flowers. As they approach flowers, hawkmoths uncoil their proboscis and explore the floral surface while hovering to target the proboscis to the nectary hole. Several sensory modalities provide feedback to control and guide these extremely versatile proboscis movements. The control task faced by the hawkmoths’ nervous system during such behaviors in not unlike that of an animal guiding limbs or a robotic agent guiding a manipulator to a target. Hawkmoths perform these reaching maneuvers while simultaneously hovering, and hence require rapid and continuous coordination between the proboscis, neck and and flight motor systems, thereby providing a unique invertebrate model for studying appendage guidance and reaching. Here, we review what is known about how hawkmoths use their proboscis for floral inspection and nectar discovery, as well as the role of various sensors in proboscis guidance. We give a brief overview of the morphology and muscular apparatus of the hawkmoth proboscis, and discuss how multimodal sensory feedback might be turned into motor action for appendage guidance.","PeriodicalId":54971,"journal":{"name":"Integrative and Comparative Biology","volume":null,"pages":null},"PeriodicalIF":2.6,"publicationDate":"2024-07-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141770034","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A surprising insight from the advent of genomic sequencing was that many genes are deeply conserved during evolution. With a particular focus on genes that interact with light in animals, I explore the metaphor of genetic toolkits, which can be operationalized as lists of genes involved in a trait of interest. A fascinating observation is that genes of a toolkit are often used again and again during convergent evolution, sometimes across vast phylogenetic distances. Such a pattern in the evolution of toolkits requires three different stages: origin, maintenance, and redeployment of the genes. The functional origins of toolkit genes might often be rooted in interactions with external environments. The origins of light interacting genes in particular may be tied to ancient responses to photo-oxidative stress, inspiring questions about the extent to which the evolution of other toolkits were also impacted by stress. Maintenance of genetic toolkits over long evolutionary timescales requires gene multifunctionality to prevent gene loss when a trait of interest is absent. Finally, the deployment of toolkit genes in convergently evolved traits like eyes sometimes involves the repeated use of similar, ancient genes but other times involves different genes specific to each convergent origin. How often a particular gene family is used time and again for the same function may depend on how many possible biological solutions are available. When few solutions exist and are maintained, evolution is constrained to use the same genes over and over. However, when many different solutions are possible, the innovative possibilities of evolution are often on display. Therefore, a focus on genetic toolkits highlights the combination of legacy-plus-innovation that drives the evolution of biological diversity.
{"title":"Building, Maintaining, and (re-)Deploying Genetic Toolkits during Convergent Evolution.","authors":"Todd H Oakley","doi":"10.1093/icb/icae114","DOIUrl":"https://doi.org/10.1093/icb/icae114","url":null,"abstract":"<p><p>A surprising insight from the advent of genomic sequencing was that many genes are deeply conserved during evolution. With a particular focus on genes that interact with light in animals, I explore the metaphor of genetic toolkits, which can be operationalized as lists of genes involved in a trait of interest. A fascinating observation is that genes of a toolkit are often used again and again during convergent evolution, sometimes across vast phylogenetic distances. Such a pattern in the evolution of toolkits requires three different stages: origin, maintenance, and redeployment of the genes. The functional origins of toolkit genes might often be rooted in interactions with external environments. The origins of light interacting genes in particular may be tied to ancient responses to photo-oxidative stress, inspiring questions about the extent to which the evolution of other toolkits were also impacted by stress. Maintenance of genetic toolkits over long evolutionary timescales requires gene multifunctionality to prevent gene loss when a trait of interest is absent. Finally, the deployment of toolkit genes in convergently evolved traits like eyes sometimes involves the repeated use of similar, ancient genes but other times involves different genes specific to each convergent origin. How often a particular gene family is used time and again for the same function may depend on how many possible biological solutions are available. When few solutions exist and are maintained, evolution is constrained to use the same genes over and over. However, when many different solutions are possible, the innovative possibilities of evolution are often on display. Therefore, a focus on genetic toolkits highlights the combination of legacy-plus-innovation that drives the evolution of biological diversity.</p>","PeriodicalId":54971,"journal":{"name":"Integrative and Comparative Biology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2024-07-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141725125","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Harry Tuazon, Samuel David, Kenneth Ma, Saad Bhamla
We investigate how the Helobdella sp. freshwater leeches capture and consume Lumbriculus variegatus blackworms despite the blackworm's ultrafast helical swimming escape reflex and ability to form large tangled "blobs". We describe a spiral "entombment" predation strategy, where Helobdellid leeches latch onto blackworms with their anterior sucker and envelop them in a spiral cocoon. Quantitative analysis shows that larger leeches succeed more often in entombing prey, while longer worms tend to escape. The rate of spiral contraction correlates with entombment outcomes, with slower rates associated with success. These insights highlight the complex interactions between predator and prey in freshwater ecosystems, providing new perspectives on ecological adaptability and predator-prey dynamics.
{"title":"Leeches Predate on Fast-Escaping and Entangling Blackworms by Spiral Entombment.","authors":"Harry Tuazon, Samuel David, Kenneth Ma, Saad Bhamla","doi":"10.1093/icb/icae118","DOIUrl":"10.1093/icb/icae118","url":null,"abstract":"<p><p>We investigate how the Helobdella sp. freshwater leeches capture and consume Lumbriculus variegatus blackworms despite the blackworm's ultrafast helical swimming escape reflex and ability to form large tangled \"blobs\". We describe a spiral \"entombment\" predation strategy, where Helobdellid leeches latch onto blackworms with their anterior sucker and envelop them in a spiral cocoon. Quantitative analysis shows that larger leeches succeed more often in entombing prey, while longer worms tend to escape. The rate of spiral contraction correlates with entombment outcomes, with slower rates associated with success. These insights highlight the complex interactions between predator and prey in freshwater ecosystems, providing new perspectives on ecological adaptability and predator-prey dynamics.</p>","PeriodicalId":54971,"journal":{"name":"Integrative and Comparative Biology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2024-07-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141725126","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Emily W Van Buren, Ivan E Ponce, Kelsey M Beavers, Alexia Stokes, Mariah Cornellio, Madison Emery, Laura D Mydlarz
Melanin is an essential product that plays an important role in innate immunity in a variety of organisms across the animal kingdom. Melanin synthesis is performed by many organisms using the tyrosine metabolism pathway, a general pathway that utilizes a type-three copper oxidase protein, called PO-candidates (phenoloxidase candidates). While melanin synthesis is well characterized in organisms like arthropods and humans, it is not as well understood in non-model organisms such as cnidarians. With the rising anthropomorphic climate change influence on marine ecosystems, cnidarians, specifically corals, are under an increased threat of bleaching and disease. Understanding innate immune pathways, such as melanin synthesis, is vital to gaining insights into how corals may be able to fight these threats. In this study, we use comparative bioinformatic approaches to provide a comprehensive analysis of genes involved in tyrosine-mediated melanin synthesis in cnidarians. Eighteen PO-candidates representing five phyla were studied to identify their evolutionary relationship. Cnidarian species were most similar to chordates due to domain presents in the amino acid sequences. From there, functionally conserved domains in coral proteins were identified in a coral disease dataset. Five stony corals exposed to stony coral tissue loss disease were leveraged to identify eighteen putative tyrosine metabolism genes, genes with functionally conserved domains to their Homo sapiens counterpart. To put this pathway the context of coral health, putative genes were correlated to melanin concentration from tissues of stony coral species in the disease exposure dataset. In this study, tyrosinase was identified in stony corals as correlated to melanin concentrations and likely plays a key role in immunity as a resistance trait. In addition, stony coral genes were assigned to all modules within the tyrosine metabolism pathway, indicating an evolutionary conservation of this pathway across phyla. Overall, this study provides a comprehensive analysis of the genes involved in tyrosine-mediated melanin synthesis in cnidarians.
黑色素是一种必需品,在动物界各种生物的先天免疫中发挥着重要作用。许多生物利用酪氨酸代谢途径合成黑色素,这种途径一般利用一种称为 PO 候选物(酚氧化酶候选物)的三型铜氧化酶蛋白。虽然黑色素合成在节肢动物和人类等生物中具有很好的特征,但在刺胞动物等非模式生物中却不甚明了。随着气候变化对海洋生态系统的人为影响不断增加,刺胞动物(尤其是珊瑚)面临的白化和疾病威胁日益严重。了解先天性免疫途径(如黑色素合成)对于深入了解珊瑚如何应对这些威胁至关重要。在这项研究中,我们使用比较生物信息学方法对参与酪氨酸介导的黑色素合成的刺胞动物基因进行了全面分析。我们研究了代表五个门的 18 个 PO 候选基因,以确定它们之间的进化关系。由于氨基酸序列中呈现的结构域,刺胞动物物种与脊索动物最为相似。由此,在珊瑚疾病数据集中确定了珊瑚蛋白质中的功能保守结构域。研究人员利用五种患石珊瑚组织缺失症的石珊瑚,确定了十八个假定的酪氨酸代谢基因,这些基因与智人的对应基因具有功能保守结构域。为了将这一途径与珊瑚健康联系起来,将推测基因与疾病暴露数据集中石珊瑚物种组织的黑色素浓度相关联。在这项研究中,发现石珊瑚中的酪氨酸酶与黑色素浓度相关,并可能在免疫力中作为一种抗性特征发挥关键作用。此外,石珊瑚的基因被分配到了酪氨酸代谢途径的所有模块中,这表明该途径在各门中具有进化保护性。总之,本研究对参与刺胞动物酪氨酸介导的黑色素合成的基因进行了全面分析。
{"title":"Structural and Evolutionary Relationships of Melanin Cascade Proteins in Cnidarian Innate Immunity.","authors":"Emily W Van Buren, Ivan E Ponce, Kelsey M Beavers, Alexia Stokes, Mariah Cornellio, Madison Emery, Laura D Mydlarz","doi":"10.1093/icb/icae115","DOIUrl":"https://doi.org/10.1093/icb/icae115","url":null,"abstract":"<p><p>Melanin is an essential product that plays an important role in innate immunity in a variety of organisms across the animal kingdom. Melanin synthesis is performed by many organisms using the tyrosine metabolism pathway, a general pathway that utilizes a type-three copper oxidase protein, called PO-candidates (phenoloxidase candidates). While melanin synthesis is well characterized in organisms like arthropods and humans, it is not as well understood in non-model organisms such as cnidarians. With the rising anthropomorphic climate change influence on marine ecosystems, cnidarians, specifically corals, are under an increased threat of bleaching and disease. Understanding innate immune pathways, such as melanin synthesis, is vital to gaining insights into how corals may be able to fight these threats. In this study, we use comparative bioinformatic approaches to provide a comprehensive analysis of genes involved in tyrosine-mediated melanin synthesis in cnidarians. Eighteen PO-candidates representing five phyla were studied to identify their evolutionary relationship. Cnidarian species were most similar to chordates due to domain presents in the amino acid sequences. From there, functionally conserved domains in coral proteins were identified in a coral disease dataset. Five stony corals exposed to stony coral tissue loss disease were leveraged to identify eighteen putative tyrosine metabolism genes, genes with functionally conserved domains to their Homo sapiens counterpart. To put this pathway the context of coral health, putative genes were correlated to melanin concentration from tissues of stony coral species in the disease exposure dataset. In this study, tyrosinase was identified in stony corals as correlated to melanin concentrations and likely plays a key role in immunity as a resistance trait. In addition, stony coral genes were assigned to all modules within the tyrosine metabolism pathway, indicating an evolutionary conservation of this pathway across phyla. Overall, this study provides a comprehensive analysis of the genes involved in tyrosine-mediated melanin synthesis in cnidarians.</p>","PeriodicalId":54971,"journal":{"name":"Integrative and Comparative Biology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2024-07-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141725127","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Context-dependent allocation of resources drives trade-offs among fitness-related traits and other phenotypes to which those traits are linked. In addition, the amount and type of acquired resources can also affect the phenotypes of other organisms through indirect genetic effects, as exemplified by the maternal provisioning of offspring. Despite a large literature on maternal effects, we lack a comprehensive understanding of the extent to which mothers might affect the phenotypes of their offspring, as well as the various mechanisms by which they do so, particularly with regard to many functional traits that are key determinants of survival and reproduction. Our goals in this paper are to review the various approaches to measuring and understanding maternal effects, and to highlight some promising avenues for integration of maternal effects with some other key areas of evolutionary ecology. We focus especially on nutritional geometry; maternal age; and traits proximate to fitness such as whole-organism performance. Finally, we discuss the logistic and practical limits of quantifying these effects in many animal systems, and emphasize the value of integrative approaches in understanding the mechanisms underlying maternal influence on offspring phenotypes.
{"title":"The Integrative Life history of Maternal Effects.","authors":"Jamie R Marks, Simon P Lailvaux","doi":"10.1093/icb/icae117","DOIUrl":"https://doi.org/10.1093/icb/icae117","url":null,"abstract":"<p><p>Context-dependent allocation of resources drives trade-offs among fitness-related traits and other phenotypes to which those traits are linked. In addition, the amount and type of acquired resources can also affect the phenotypes of other organisms through indirect genetic effects, as exemplified by the maternal provisioning of offspring. Despite a large literature on maternal effects, we lack a comprehensive understanding of the extent to which mothers might affect the phenotypes of their offspring, as well as the various mechanisms by which they do so, particularly with regard to many functional traits that are key determinants of survival and reproduction. Our goals in this paper are to review the various approaches to measuring and understanding maternal effects, and to highlight some promising avenues for integration of maternal effects with some other key areas of evolutionary ecology. We focus especially on nutritional geometry; maternal age; and traits proximate to fitness such as whole-organism performance. Finally, we discuss the logistic and practical limits of quantifying these effects in many animal systems, and emphasize the value of integrative approaches in understanding the mechanisms underlying maternal influence on offspring phenotypes.</p>","PeriodicalId":54971,"journal":{"name":"Integrative and Comparative Biology","volume":null,"pages":null},"PeriodicalIF":2.2,"publicationDate":"2024-07-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141635929","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}