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An Introduction to the Symposium: An Integrative Look at Whole-organism Trade-offs from the Female-centered Perspective of Biology 研讨会简介:从以女性为中心的生物学视角综合审视整个有机体的权衡问题
IF 2.6 3区 生物学 Q1 ZOOLOGY Pub Date : 2024-08-27 DOI: 10.1093/icb/icae149
Chloe C Josefson, Teri J Orr
Trade-offs during reproduction have long been a central focus within biology and much of the foundational work within life history evolution has focused on females, as the fitness of females is more easily quantified for use in theoretical models. However, in many regards, the field of organismal biology has deviated from this early focus on females, particularly as it relates to the nuances and dynamic nature of female reproduction. Regardless, at the organismal level, reproduction is thought to trade-off with other simultaneously-occurring processes. Recent papers have sought to outline the issues with our current understanding of whole-organism trade-offs, though the field as a whole has not come to a consensus on what trade-offs mean to a reproducing female. To rectify this important gap in how trade-offs are discussed in organismal biology as well as confusion about what constitutes a trade-off, our overarching goal of this symposium was to discuss trade-offs from an integrative perspective that places female reproduction at the center. By answering what trade-offs are and what they mean to reproducing females, what has been neglected in the context of whole-organism physiology, and how maternal effects fit within this framework, our group of speakers and their associated papers will crystalize nuances of measuring and determining presence (if any) of trade-offs in reproducing females in a range of taxa and subfields.
长期以来,生殖过程中的权衡一直是生物学的核心焦点,生命史进化的大部分基础工作都集中在雌性身上,因为雌性的适应性更容易量化,可用于理论模型。然而,在许多方面,生物体生物学领域已经偏离了早期对雌性的关注,特别是与雌性繁殖的细微差别和动态性质有关的方面。无论如何,在生物体层面,繁殖被认为是与其他同时发生的过程进行权衡的过程。最近的一些论文试图概述我们目前对整个有机体权衡的理解所存在的问题,尽管整个领域还没有就权衡对繁殖雌性意味着什么达成共识。为了弥补生物生物学领域在讨论权衡问题时存在的这一重要缺陷,以及对什么是权衡的困惑,我们在本次研讨会上的首要目标是以雌性繁殖为中心,从综合的角度讨论权衡问题。通过回答什么是权衡、权衡对繁殖雌性意味着什么、在整个有机体生理学的背景下什么被忽视了,以及母性效应如何适应这一框架,我们的演讲者及其相关论文将阐明在一系列类群和子领域中测量和确定繁殖雌性是否存在权衡(如果有的话)的细微差别。
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引用次数: 0
Spines and Inclines: Bioinspired Spines on an Insect-Scale Robot Facilitate Locomotion on Rough and Inclined Terrain. 刺与斜面:昆虫级机器人上的生物启发刺有助于在崎岖和倾斜的地形上行走。
IF 2.2 3区 生物学 Q1 ZOOLOGY Pub Date : 2024-08-21 DOI: 10.1093/icb/icae145
Alyssa M Hernandez, Perrin E Schiebel, Jennifer Shum, Robert J Wood

To navigate complex terrains, insects use diverse tarsal structures (adhesive pads, claws, spines) to reliably attach to and locomote across substrates. This includes surfaces of variable roughness and inclination, which often require reliable transitions from ambulatory to scansorial locomotion. Using bioinspired physical models as a means for comparative research, our study specifically focused on the diversity of tarsal spines, which facilitate locomotion via frictional engagement and shear force generation. For spine designs, we took inspiration from ground beetles (Family Carabidae), which is a largely terrestrial group known for their quick locomotion. Evaluating four different species, we found that the hind legs host linear rows of rigid spines along the entire tarsus. By taking morphometric measurements of the spines, we highlighted parameters of interest (e.g., spine angle and aspect ratio) in order to test their relationship to shear forces sustained during terrain interactions. We systematically evaluated these parameters using spines cut from stainless steel shim attached to a small acrylic sled loaded with various weights. The sled was placed on 3D-printed models of rough terrain, randomly generated using fractal Brownian motion, while a motorized pulley system applied force to the spines. A force sensor measured the reaction force on the terrain, recording shear force before failure occurred. Initial shear tests highlighted the importance of spine angle, with bioinspired anisotropic designs producing higher shear forces. Using this data, we placed the best (50○ angle) and worst (90○ angle) performing spines on the legs of our insect-scale ambulatory robot physical model. We then tested the robot on various surfaces at 0, 10 and 20○ inclines, seeing similar success with the more bioinspired spines.

为了在复杂的地形上航行,昆虫利用各种跗关节结构(粘垫、爪、刺)可靠地附着在基质上并在基质上运动。这包括粗糙度和倾斜度各异的表面,而这些表面通常需要可靠地从伏地运动过渡到扫描运动。利用生物启发物理模型作为比较研究的手段,我们的研究特别关注跗骨棘的多样性,它通过摩擦啮合和产生剪切力来促进运动。在刺的设计方面,我们从地甲虫(甲壳虫科)中汲取了灵感,地甲虫主要是以快速运动著称的陆生类群。在对四个不同物种进行评估后,我们发现它们的后腿在整个跗节上都有一排线性的硬刺。通过对棘刺的形态测量,我们突出了感兴趣的参数(如棘刺角度和长宽比),以检验它们与地形相互作用时所承受的剪切力之间的关系。我们使用从不锈钢垫片上切割下来的脊柱系统地评估了这些参数,这些垫片连接在一个装有不同重量的小型丙烯酸雪橇上。雪橇被放置在利用分形布朗运动随机生成的粗糙地形 3D 打印模型上,同时电动滑轮系统对棘刺施力。力传感器测量地形上的反作用力,记录发生故障前的剪切力。最初的剪切测试强调了脊柱角度的重要性,生物启发各向异性设计产生的剪切力更大。利用这些数据,我们将性能最好(50°)和最差(90°)的脊柱放置在昆虫尺度可移动机器人物理模型的腿上。然后,我们在倾斜度为 0、10 和 20 ○ 的各种表面上对机器人进行了测试,结果显示,生物启发较多的棘刺取得了类似的成功。
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引用次数: 0
An integrative understanding of evolutionary convergence across organisms and biological scales. 综合理解跨生物和生物尺度的进化趋同。
IF 2.2 3区 生物学 Q1 ZOOLOGY Pub Date : 2024-08-17 DOI: 10.1093/icb/icae142
Emily S Lau, Rebecca M Varney, Jessica A Goodheart

The extent to which evolution is predictable is a long-standing question in biology, with implications for urgent biological issues such as viral evolution, the emergence of antibiotic resistance in bacteria, and organismal responses to climate change. Convergent evolution, the phylogenetically independent evolution of similar phenotypes, provides biological replicates useful for exploring patterns of predictability in evolution. Understanding evolutionary convergence requires synthesizing findings across biological scales and organisms. To this end, we organized a SICB-wide symposium entitled "Integrating research on convergent evolution across levels of biological organization, organisms, and time". Our symposium showcased interdisciplinary research on evolutionary convergence across diverse study systems and levels of biological organization, while highlighting new techniques and comparative methods for identifying patterns of predictability in convergently evolved traits. Here, we introduce findings from papers included in this symposium issue and identify common themes, highlight emerging questions, and discuss how we can integrate new techniques, tools, and systems to expand our understanding of evolutionary convergence.

进化在多大程度上具有可预测性是生物学中一个长期存在的问题,它对病毒进化、细菌出现抗生素耐药性以及生物体对气候变化的反应等紧迫的生物学问题都有影响。趋同进化,即相似表型在系统发育上的独立进化,为探索进化的可预测性模式提供了有用的生物复制品。要了解进化趋同性,就需要综合跨生物尺度和生物体的研究结果。为此,我们组织了一次 SICB 范围内的研讨会,题为 "跨生物组织、生物体和时间层面的趋同进化综合研究"。我们的研讨会展示了跨学科研究在不同研究系统和生物组织层次上的趋同进化研究,同时重点介绍了用于识别趋同进化性状中可预测性模式的新技术和比较方法。在此,我们将介绍本期研讨会论文的研究成果,并确定共同的主题,强调新出现的问题,讨论如何整合新技术、新工具和新系统,以拓展我们对进化趋同的理解。
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引用次数: 0
Computational and Physical Modeling to Understand Form-Function Relationships. 通过计算和物理建模了解形式-功能关系。
IF 2.2 3区 生物学 Q1 ZOOLOGY Pub Date : 2024-08-16 DOI: 10.1093/icb/icae136
M Janneke Schwaner, S Tonia Hsieh

The morphology-performance-fitness paradigm has long been a guiding principle inspiring a great deal of laboratory and field studies fundamental to understanding functional-morphology relationships across the tree of life. Despite the power of experimental approaches they also come with inherent limitations associated with equipment and animal costs, as well as ethical considerations for the types of manipulations that can be implemented. Modeling can provide an opportunity to surmount some of these challenges by offering greater flexibility in manipulating variables and exploring a wider parameter space than is tractable during animal experimentation. However, effective implementation of these tools requires careful consideration of the limitations and benefits they convey, requiring both greater interdisciplinary training from early stages of educational development and increased collaboration and synergies among scientists from traditionally separate disciplines. With institutions increasingly recognizing the need for and investing in providing universal access to computational and rapid prototyping resources, we believe that it is an opportune moment to prioritize greater synergy to accelerate discovery and innovation across fields.

长期以来,形态-性能-适配性范式一直是一项指导原则,激励着大量的实验室和野外研究,这些研究对于理解生命树的功能-形态关系至关重要。尽管实验方法很强大,但它们也有与设备和动物成本相关的固有限制,以及对可实施的操作类型的伦理考虑。与动物实验相比,建模在操作变量和探索更广阔的参数空间方面具有更大的灵活性,因此有机会克服其中的一些挑战。然而,要有效地使用这些工具,就必须认真考虑它们的局限性及其带来的益处,这就要求在教育发展的早期阶段就加强跨学科培训,并加强来自传统上独立学科的科学家之间的合作和协同作用。随着越来越多的机构认识到普及计算和快速原型资源的必要性并为此进行投资,我们认为现在正是优先加强协同合作以加速跨领域发现和创新的大好时机。
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引用次数: 0
Correction to: Collecting-Gathering Biophysics of the Blackworm Lumbriculus variegatus. 更正:黑虫 Lumbriculus variegatus 的采集-采集生物物理学。
IF 2.2 3区 生物学 Q1 ZOOLOGY Pub Date : 2024-08-14 DOI: 10.1093/icb/icae139
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引用次数: 0
Correction to: Once Is Not Enough: Seasonal Patterns in Abundance of Hydromedusae Are Not Consistent in the Coastal Waters of the Bay of Panama. 更正为Once Is Not Enough:巴拿马湾沿岸水域水螅虫丰度的季节模式并不一致。
IF 2.2 3区 生物学 Q1 ZOOLOGY Pub Date : 2024-08-13 DOI: 10.1093/icb/icae133
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引用次数: 0
A Practical Guide to Avoiding Biased Communication in Reproductive Biology. 避免生殖生物学交流偏见的实用指南》。
IF 2.2 3区 生物学 Q1 ZOOLOGY Pub Date : 2024-08-13 DOI: 10.1093/icb/icae138
Z W Baker, Virginia Hayssen

When cultural biases pervade communication, whether visual or text-based, objectivity is impaired. Anthropocentrism (human-centered bias) and androcentrism (male-centered bias) in particular distort perspectives in mammalian reproductive biology. This paper provides a resource for professionals who understand how cultural biases can be reinforced with language, visuals, and conceptual framing. After brief explanations, we present neutral alternatives to biased terminology as well as ways to avoid bias in illustrations. Since this paper is animal-centric, we hope to inspire the creation of similar resources across a more diverse biota and, thus, move towards a more neutral perspective across reproductive biology.

当文化偏见充斥着视觉或文字交流时,客观性就会受到损害。人类中心主义(以人为中心的偏见)和雄性中心主义(以雄性为中心的偏见)尤其会扭曲哺乳动物生殖生物学的观点。本文为了解文化偏见如何通过语言、视觉和概念框架得到强化的专业人士提供了一种资源。在简短的解释之后,我们提出了一些中性的方法来替代有偏见的术语,以及在图解中避免偏见的方法。由于本文以动物为中心,我们希望能激励人们在更多样化的生物群中创建类似的资源,从而在整个生殖生物学领域形成更加中立的观点。
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引用次数: 0
A Comparison of the mitochondrial performance between migratory and sedentary mimid thrushes. 迁徙型鸫鸟与定居型鸫鸟线粒体性能的比较。
IF 2.2 3区 生物学 Q1 ZOOLOGY Pub Date : 2024-08-09 DOI: 10.1093/icb/icae137
Emma M Rhodes, Kang Nian Yap, Geoffrey E Hill, Wendy R Hood

Birds exhibit a variety of migration strategies. Because sustained flapping flight requires the production of elevated levels of energy compared to typical daily activities, migratory birds are well-documented to have several physiological adaptations to support the energy demands of migration. However, even though mitochondria are the source of ATP that powers flight, the respiratory performance of the mitochondria is almost unstudied in the context of migration. We hypothesized that migratory species would have higher mitochondrial respiratory performance during migration compared to species that do not migrate. To test this hypothesis, we compared variables related to mitochondrial respiratory function between two confamilial bird species-the migratory Gray Catbird (Dumetella carolinensis) and the non-migratory Northern Mockingbird (Mimus polyglottos). Birds were captured at the same location along the Alabama Gulf Coast, where we assumed that Gray Catbirds were migrants and where resident Northern Mockingbirds live year-round. We found a trend in citrate synthase activity, which suggests that Gray Catbirds have a greater mitochondrial volume in their pectoralis muscle, but we observed no other differences in mitochondrial respiration or complex enzymatic activities between individuals from the migrant versus the non-migrant species. However, when we assessed the catbirds included in our study using well-established indicators of migratory physiology, birds fell into two groups: a group with physiological parameters indicating a physiology of birds engaged in migration and a group with the physiology of birds not migrating. Thus, our comparison included catbirds that appeared to be outside of migratory condition. When we compared the mitochondrial performance of these three groups, we found that the mitochondrial respiratory capacity of migrating catbirds was very similar to that of Northern Mockingbirds, while the catbirds judged to be not migrating were lowest. One explanation for these observations is these species display very different daily flight behaviors. While the mockingbirds we sampled were not breeding nor migrating, they are highly active birds, living in the open and engaging in flapping flights throughout each day. In contrast, Gray Catbirds live in shrubs and fly infrequently when not migrating. Such differences in baseline energy needs likely confounded our attempt to study adaptations to migration.

鸟类的迁徙策略多种多样。与典型的日常活动相比,持续的拍打飞行需要产生更高水平的能量,因此候鸟在生理上有多种适应措施,以支持迁徙的能量需求。然而,尽管线粒体是为飞行提供动力的 ATP 的来源,但线粒体的呼吸性能在迁徙过程中几乎没有得到研究。我们假设,与不迁徙的物种相比,迁徙物种在迁徙过程中的线粒体呼吸性能更高。为了验证这一假设,我们比较了两种共栖鸟类--迁徙性灰猫鸟(Dumetella carolinensis)和非迁徙性北方知更鸟(Mimus polyglottos)--线粒体呼吸功能的相关变量。我们在阿拉巴马州海湾沿岸的同一地点捕获了这些鸟,我们假定灰猫鸟是迁徙鸟,而北方知更鸟则常年生活在那里。我们发现柠檬酸合成酶活性呈上升趋势,这表明灰猫鸟的胸肌线粒体体积较大,但我们没有观察到迁徙物种与非迁徙物种个体在线粒体呼吸或复合酶活性方面的其他差异。然而,当我们使用成熟的迁徙生理指标对研究中的猫蝠鸟进行评估时,发现猫蝠鸟分为两组:一组的生理指标表明猫蝠鸟具有迁徙的生理特征,另一组则表明猫蝠鸟不具有迁徙的生理特征。因此,我们的比较包括了似乎不处于迁徙状态的猫蝠鸟。当我们比较这三类鸟的线粒体性能时,我们发现迁徙猫鸟的线粒体呼吸能力与北方知更鸟的线粒体呼吸能力非常相似,而被判定为非迁徙的猫鸟的线粒体呼吸能力最低。对这些观察结果的一种解释是,这些物种的日常飞行行为截然不同。虽然我们采样的知更鸟既不繁殖也不迁徙,但它们是高度活跃的鸟类,生活在空旷的地方,每天都在进行拍打飞行。相比之下,灰猫鸟生活在灌木丛中,不迁徙时很少飞行。这种基本能量需求的差异很可能会影响我们对迁徙适应性的研究。
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引用次数: 0
Introduction to the 2024 Chordate Origins, Evolution and Development SICB Symposium. 2024 年脊索动物起源、进化和发展 SICB 研讨会简介。
IF 2.2 3区 生物学 Q1 ZOOLOGY Pub Date : 2024-08-05 DOI: 10.1093/icb/icae135
Billie J Swalla

The evolution of the distinct chordate body plan has intrigued scientists for over a hundred and seventy years. Modern genomics and transcriptomics have allowed the elucidation of the Developmental Gene Regulatory Networks (GRNs) underlying the developmental programs for particular tissues and body axes in invertebrates and vertebrates. This has been most revealing in the Deuterostomia, the superphylum in which chordates evolved. The time was ripe to gather those working on deuterostome developmental GRNs to revisit the development and evolution of chordates and discuss the evolution of this unique body plan at the SICB 2024 meetings in Seattle, WA. It has been several years since the genomes of the major deuterostome clades have been sequenced - echinoderms, hemichordates, tunicates, lancelets and vertebrates. Genomic analyses have shown that lancelets have a genome and body plan that closely resemble the vertebrates, although phylogenomic analyses suggest that the tunicates are the sister group of the vertebrates. The evolution of the sessile and sometimes colonial adult tunicates was likely from a motile, lancelet-like ancestor. Scientists from all over the world converged at the SICB meetings in Seattle to discuss the current ideas of how chordates evolved. Some common mechanisms and themes emerged and are captured in this ICB volume on Chordate Origins, Evolution and Development.

170多年来,脊索动物独特身体结构的进化一直吸引着科学家。现代基因组学和转录组学已经阐明了无脊椎动物和脊椎动物特定组织和体轴发育程序所依赖的发育基因调控网络(GRNs)。这在脊索动物进化的超门类--去骨动物中最具启发性。在华盛顿州西雅图举行的 SICB 2024 年会议上,聚集研究去骨动物发育 GRN 的人员重新审视脊索动物的发育和进化并讨论这种独特身体结构的进化的时机已经成熟。自从对棘皮动物、半脊索动物、鳞腔动物、小脊索动物和脊椎动物等主要中脊类群的基因组进行测序以来,已经过去了好几年。基因组分析表明,小枪鱼的基因组和身体结构与脊椎动物非常相似,尽管系统发生学分析表明,鳞栉水母类是脊椎动物的姊妹类群。无柄、有时呈群居状的成年鳞茎类动物很可能是由一种运动的、类似长矛的祖先进化而来的。来自世界各地的科学家汇聚在西雅图举行的 SICB 会议上,讨论目前关于脊索动物如何进化的观点。其中出现了一些共同的机制和主题,这些都收录在这本国际脊索动物大会关于脊索动物起源、进化和发展的论文集中。
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引用次数: 0
Modeling Organismal Responses to Changing Environments. 模拟生物对不断变化的环境的反应。
IF 2.2 3区 生物学 Q1 ZOOLOGY Pub Date : 2024-08-05 DOI: 10.1093/icb/icae131
Kendra J Greenlee, Dianna K Padilla

Throughout their lives, organisms must integrate and maintain stability across complex developmental, morphological, and physiological systems, all while responding to changing internal and external environments. Determining the mechanisms underlying organismal responses to environmental change and development is a major challenge for biology. This is particularly important in the face of the rapidly changing global climate, increasing human populations, and habitat destruction. In January 2024, we organized a symposium to highlight some current efforts to use modeling to understand organismal responses to short- and long-term changes in their internal and external environments. Our goal was to facilitate collaboration and communication between modelers and organismal biologists, which is one of the major aims of the Organismal Systems-type Modeling Research Coordination Network, OSyM. Accompanying this introduction are a series of papers that are aimed to enhance research and education in linking organismal biology and modeling and contribute to building a new community of scientists to tackle important questions using this approach.

在整个生命过程中,生物体必须整合复杂的发育、形态和生理系统并保持稳定,同时应对不断变化的内部和外部环境。确定生物体对环境变化和发展的反应机制是生物学面临的一大挑战。面对快速变化的全球气候、不断增加的人口和栖息地的破坏,这一点尤为重要。2024 年 1 月,我们组织了一次专题讨论会,重点介绍了目前在利用建模了解生物体对其内外环境短期和长期变化的反应方面所做的一些努力。我们的目标是促进建模者和生物学家之间的合作与交流,这也是有机系统建模研究协调网络(OSyM)的主要目标之一。本文介绍了一系列论文,旨在加强将生物体生物学与建模联系起来的研究和教育,并为建立一个利用这种方法解决重要问题的新科学家社区做出贡献。
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引用次数: 0
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