Fungal Ecology最新文献

Studies have shown that arbuscular mycorrhizal fungi (AMF) can shape the rhizosphere microbial community of the host plant, but the underlying mechanisms are unclear. Here, we tested the hypotheses that AMF may affect the rhizosphere microbial community by mediating carbon (C) allocation of the host plant, and that this mediation may be modulated by the soil phosphorus (P) level. Using a split-root system, we conducted a microcosm experiment with three main effects (soil P level: 5 or 25 mg kg⁻¹; AMF: with or without inoculation; and spatial niche (i.e., rhizosphere, hyphosphere, and mycorrhizosphere). Host plant growth benefited from AMF under low soil-P conditions. ¹³CO₂ isotope labeling showed that AMF increased C allocation to the colonized root and AMF mycelia under low-P conditions, which promoted AMF growth. ¹³C-DNA-SIP and 16S rRNA sequencing further indicated that the enhanced C allocation from the host altered the soil microbial community. Our results suggest that AMF enhances the C allocation of the host plant below ground, which can shape microbial community composition. These AMF effects were greater with a low than with a high level of soil P.

Arbuscular mycorrhizal fungi (AMF) play an important role in maintaining the function and sustainability of grassland ecosystem, but they are also susceptible to environmental changes. In recent decades, alpine meadows on the Tibetan Plateau have experienced severe degradation due to the impact of human activities and climate change. But it remains unclear how degradation affects the AMF community, a group of functionally important root associated microorganisms, which potentially limit the development and application of microbial technologies in the restoration of degraded grasslands. In this study, we investigated AMF communities richness and composition in non-degraded (ND), moderately degraded (MD) and severely degraded (SD) alpine meadows on the Tibetan Plateau, and then explored their main biotic and abiotic determinants. Alpine meadow degradation significantly reduced plant community biomass, richness, soil organic carbon, total nitrogen, total phosphorus, available nitrogen and available phosphorus, but increased soil pH. AMF community composition and the iesdominant family and genera differed significantly among different degradation stages. Grassland degradation shifted the AMF community composition in favor of Claroideoglomus over Rhizophagus, and resulted in a marked loss of Glomeraceae and the dominance of Diversisporaceae. Alpine meadow degradation significantly increased AMF hyphal density and richness, likely working as a plant strategy to relieve nutrient deficiencies or loss as a result of degradation. The structural equation model showed that AMF community richness and composition were significantly influenced by plant community, followed by soil available nutrients. Soil available nutrients was the key contributor to the increased AMF hyphal density and richness during grassland degradation. Our findings identify the effects of alpine meadow degradation on AMF richness and highlight the importance of the plant community in shaping the AMF community during alpine meadow degradation. These results suggest that plant community restoration should be the primary goal for the ecological restoration of degraded alpine meadows, and these soil functional microorganisms should be simultaneously integrated into ecological restoration strategies and management.

There is a need for non-invasive monitoring of temporal and spatial variation in hydration and photosynthetic activity of red-listed poikilohydric autotrophs. Here, we simultaneously recorded kinetics in RGB-colors (photos), reflectance spectra, water content, maximal (F_V/F_M), and effective quantum yield of PSII (Φ_PSII) during desiccation in foliose lichens differing in cortical characteristics and photobionts. The spectral absorbance peaks of chlorophyll a, phycocyanin, and phycoerythrin were clearly displayed at high hydration levels. Brightness and total RGB colors of the lichens strongly increased during desiccation. The normalized difference vegetation index (NDVI) efficiently estimated hydration level and Φ_PSII – a proxy for lichen photosynthesis – in all species, including threatened old forest lichens. Color and reflectance indices based on green wavelengths gave good estimates of water content in cephalo- and chlorolichens, but not in cyanolichens with a wider range of photosynthetic pigments. Due to species-specific characteristics, species-wise calibration is essential for non-invasive assessments of lichen functioning.

Yeast species in the Candida haemulonii complex (C. haemulonii, C. haemulonii var. vulnera, C. duobushaemulonii, C. pseudohaemulonii, and C. vulturna) and closely related species (C. auris, C. heveicola, and C. ruelliae) are of significant public health concern worldwide. Little is known about their natural habitat. To understand the worldwide emergence of new fungal pathogens, it is important to identify key environmental habitats. Showing the effectiveness of the primary fungal DNA barcode and leveraging big data archived in the Sequence Read Archive (SRA) database enabled the identification of novel reservoirs over a wide range of geographical areas for those yeasts. We identified 1209 datasets corresponding to species in the C. haemulonii complex and three closely related species. Our results imply that climate change is not the main driver for the emergence of pathogenic multidrug-resistant yeast species. This approach opens the door for further big data analysis using the accessible resources of such databases.

In forest ecosystems, fungi are the key actors in wood decay. They have the capability to degrade lignified substrates and the woody biomass of coniferous forests, with brown rot fungi being common colonizers. Brown rots are typically involved in the earliest phase of lignocellulose breakdown, which therefore influences colonization by other microorganisms. However, few studies have focused on the impact of introducing decayed wood into forest environments to gauge successional colonization by natural bacterial and fungal communities following partial decay. This study aimed to address this issue by investigating the bacterial and fungal colonization of Norway spruce (Picea abies) wood, after intermediate and advanced laboratory-based, pre-decay, by the brown rot fungus Gloeophyllum trabeum. Using Illumina metabarcoding, the in situ colonization of the wood blocks was monitored 70 days after the blocks were placed on the forest floor and covered with litter. We observed significant changes in the bacterial and fungal communities associated with the pre-decayed stage. Further, the wood substrate condition acted as a gatekeeper by reducing richness for both microbial communities and diversity of fungal communities. Our data also suggest that the growth of some fungal and bacterial species was driven by similar environmental conditions.

Monostichella coryli is the causal agent of the hazelnut anthracnose. The increase in the incidence in hazelnut orchards observed during recent years in Central Italy is increasing the need for information and studies on its biology and ecology, and how environmental factors (e.g., temperature) influence its development. For this purpose, seven isolates from different provenances of M. coryli were studied under controlled laboratory conditions with the goal of laying the foundations of a mathematical model describing key aspects of the pathogen's life cycle. The mycelium growth rate was measured at 6 different constant temperatures (5, 10, 15, 20, 25, 30 °C) and fixed relative humidity (100% RH), while the germination rate of the conidia was evaluated at 8 different constant temperatures (5, 10, 15, 20, 23, 25, 27, 30 °C). The dataset was subsequently analyzed estimating the parameters of non-linearfunctions which consider the relationship between the mycelium growth rate and the germination of the spores with environmental temperature. The set of parameters provided as the result of this study constitutes a key step forward in the biological knowledge of the species and the basis for future formulations of mathematical models to be used as decision support systems in an integrated pest management framework.

We studied the endolichenic fungal communities from saxicolous lichens occupying the cobbles at Nahal Boker, the central Negev Desert, Israel. Overall, 101 species belonging to 64 genera were isolated from 12 lichen species collected in three seasons from the south-facing slope (SFS) and north-facing slope (NFS) of the wadi. The endolichenic communities possessed a set of traits, which helped them to cope with harsh internal and external conditions. It included a prevalence of melanin-containing fungi with thick-walled and multicellular spores and a comparatively high contribution of thermotolerant species and species with meiospore-producing life cycle stage at the more microclimatically severe SFS. Species richness and isolate density of endolichenic communities was the highest in fruticose lichens with thick and wrinkled thalli, and the lowest in endolithic species possessing thin and smooth thalli. The communities from lichens formed a more diverse group than those from surrounding cobbles probably due to the influence of various species of lichens belonging to different growth forms.

Fungal endophyte community amplicon sequencing can lose a significant number of informative reads due to host-plant co-amplification. Blocking of plant-specific sequences with peptide nucleic acid (PNA) clamps has been shown to improve metrics of detected microbial diversity in studies targeting 16S and 18S regions of rRNA genes. However, PNA clamping has not been applied to the plant ITS region of rRNA gene – a widely accepted fungal marker. By applying PNA clamping technique to ITS amplicon sequencing of the endophytic fungal community of elderberry this study shows that PNA clamping significantly reduces host-plant co-amplification with the universal ITS1/ITS4 primer set. However, PNA clamping in combination with the discriminatory ITS1F/ITS2 primer set did not improve the metrics of fungal endophyte community ITS amplicon Illumina sequencing. This study shows that PNA clamping does not add practical benefit to taxonomic profiling of plant-associated fungal communities if the primers are already specific enough to exclude amplification of host DNA.

Compared to other groups of fungi, the knowledge of freshwater predacious fungi that feed on trapped rotifers and tardigrades is very limited. They are known to spread and survive under adverse conditions by releasing asexual spores (conidia), but the environmental factors that induce their conidiation are unclear. In this study, we investigated the conidiation of the rotiferovorous fungus Zoophagus insidians isolated from activated sludge and maintained under laboratory conditions in spring water (medium). We found that its conidiation can undergo significant changes in response to various environmental factors, such as medium exchange, presence or absence of prey, lighting conditions, and their combination. Our results revealed a surprisingly high flexibility of this obligate predacious fungus, which being constantly exposed to unpredictable availability of prey in an unstable environment is still able to survive and disperse.

During litter decay, different fungal decomposer genera reach their highest relative abundance at different times. We tested the long-standinghypothesis that this “peak decay stage” of fungi is related to the activity of their fungal extracellular enzymes that break down various plant biopolymers and related as well to the growth rate of fungi. Using 50 decomposer fungal species, spanning a range of peak decay stages, we measured (1) the activity of four polysaccharidases and two oxidases generated by each species, and (2) fungal species’ growth rates. We found that the activity of cellobiohydrolase and growth rate were negatively correlated with peak time point for filamentous fungi; fungi peaking early had greatest cellobiohydrolase activity and fastest growth. No relationships were found between peak decay stage and enzymes or growth for yeasts. These data suggest growth and resource use are important factors shaping succession during decay by the main fungal decomposers, but as-yetuninvestigated traits may explain the remainder of the variation in succession.