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Prognostic model for prostate cancer based on glycolysis-related genes and non-negative matrix factorization analysis 基于糖酵解相关基因和非阴性基质因子分析的前列腺癌预后模型
IF 1.2 4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.32604/biocell.2023.023750
Zechao Lu, Fucai Tang, Haobin Zhou, Zeguang Lu, Wanyan Cai, Jiahao Zhang, Zhicheng Tang, Yongchang Lai, Zhaohui He
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引用次数: 0
A pan-cancer analysis of the biological function and clinical value of BTLA in tumors BTLA在肿瘤中的生物学功能及临床价值的泛癌分析
IF 1.2 4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.32604/biocell.2023.025157
Xianglai Jiang, Jin He, Yongfeng Wang, Jiahui Liu, Xiangyang Li, Xiaoniu He, Hui Cai
B and T-lymphocyte attenuator (BTLA) plays an immunosuppressive role by inhibiting Tand B-cell functions. BTLA is associated with a variety of diseases, especially cancer immunity. However, the function of BTLA in various cancers and its clinical prognostic value have still not been comprehensively analyzed. This study aimed to identify the relationship between BTLA and cancer from the perspectives of differences in BTLA expression, its clinical value, immune infiltration, and the correlation with immune-related genes in various cancers. Data regarding mRNA expression, miRNA expression, lncRNA expression, and clinical data of patients of 33 existing cancers were collected from the TCGA database. Target miRNA of BTLA and the lncRNA that interacts with the target miRNA were obtained from the StarBase database. Based on bioinformatics analysis methods, the relationship between various types of cancers and BTLA was thoroughly investigated, and a competing endogenous RNA network of BTLA, target miRNA, and interacting lncRNA was constructed. The Kaplan-Meier (KM) prognostic analysis of BTLA and target miRNA (has-miR-137) in various types of cancers was completed using the KM plotter. BTLA expression varied in different cancers, with statistical significance in nine cancer types. KM plotter to analyze the overall survival (OS) and regression-free survival prognosis of cancer patients revealed that the BTLA expression was statistically different in the OS of 11 types of cancers out of 21 types of cancers; the OS of 8 type of cancers was also statistically different. Correlation analysis of tumor immune genes revealed a positive correlation of BTLA expression with immunosuppressive gene (CTLA4 and PDCD1) expression. Gene Set Enrichment Analysis showed that BTLA and its co-expressed genes mainly act through biological processes and pathways, including immune response regulation, cell surface receptor signaling pathway, antigen binding, antigen receptor-mediated signaling pathway, and leukocyte migration. BTLA has the potential as a prognostic marker for CLL, COAD, NSCLC, and OV and a diagnostic marker for CLL, COAD, and KIRC. BTLA has a close and complex relationship with the occurrence and development of tumors, and cancer immunotherapy for BTLA is worthy of further analysis.
B和t淋巴细胞衰减剂(BTLA)通过抑制t和B细胞功能发挥免疫抑制作用。BTLA与多种疾病有关,特别是与癌症免疫有关。然而,BTLA在各种肿瘤中的作用及其临床预后价值尚未得到全面分析。本研究旨在从BTLA在各种肿瘤中的表达差异、临床价值、免疫浸润及与免疫相关基因的相关性等方面探讨BTLA与肿瘤的关系。从TCGA数据库中收集33例现有肿瘤患者的mRNA表达、miRNA表达、lncRNA表达及临床资料。BTLA的靶miRNA和与靶miRNA相互作用的lncRNA从StarBase数据库中获得。基于生物信息学分析方法,深入研究了不同类型肿瘤与BTLA的关系,构建了BTLA、靶miRNA和相互作用lncRNA相互竞争的内源RNA网络。使用KM绘图仪完成各种类型癌症中BTLA和靶miRNA (has-miR-137)的Kaplan-Meier (KM)预后分析。BTLA在不同肿瘤中的表达存在差异,在9种肿瘤类型中表达差异均有统计学意义。KM绘图仪分析肿瘤患者的总生存期(OS)和无回归生存预后结果显示,21种肿瘤中有11种肿瘤的OS中BTLA表达有统计学差异;8种癌症的OS也有统计学差异。肿瘤免疫基因相关性分析显示BTLA表达与免疫抑制基因(CTLA4和PDCD1)表达呈正相关。基因集富集分析表明,BTLA及其共表达基因主要通过免疫应答调节、细胞表面受体信号通路、抗原结合、抗原受体介导的信号通路、白细胞迁移等生物学过程和途径发挥作用。BTLA有潜力作为CLL、COAD、NSCLC和OV的预后标志物,以及CLL、COAD和KIRC的诊断标志物。BTLA与肿瘤的发生发展有着密切而复杂的关系,针对BTLA的肿瘤免疫治疗值得进一步分析。
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引用次数: 1
Prognostic prediction and expression validation of NSD3 in pan-cancer analyses NSD3在泛癌分析中的预后预测和表达验证
IF 1.2 4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.32604/biocell.2023.027209
Shao Li, Yaqiong Liu, C. Yao, Anji Xu, Xiaoling Zeng, Y. Ge, Xiaowu Sheng, Hailin Zhang, Xiao Zhou, Ying Long
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引用次数: 0
Exploration of the oxidative-inflammatory potential targets of Coicis Semen in osteoarthritis: Data mining and systematic pharmacology 探索薏苡米在骨关节炎中的氧化炎性潜在靶点:数据挖掘和系统药理学
IF 1.2 4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.32604/biocell.2023.028331
Qiao-mei Zhou, Jian Liu, L. Xin, Yanyan Fang, L. Wan, D. Huang, J. Wen
{"title":"Exploration of the oxidative-inflammatory potential targets of Coicis Semen in osteoarthritis: Data mining and systematic pharmacology","authors":"Qiao-mei Zhou, Jian Liu, L. Xin, Yanyan Fang, L. Wan, D. Huang, J. Wen","doi":"10.32604/biocell.2023.028331","DOIUrl":"https://doi.org/10.32604/biocell.2023.028331","url":null,"abstract":"","PeriodicalId":55384,"journal":{"name":"Biocell","volume":null,"pages":null},"PeriodicalIF":1.2,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"86823146","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The role of mesenchymal stem cell-derived exosomes in tumor progression 间充质干细胞来源的外泌体在肿瘤进展中的作用
IF 1.2 4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.32604/biocell.2023.028567
Carl RANDALL HARREL, Valentin Djonov, A. Volarević, D. Pavlovic, V. Volarevic
{"title":"The role of mesenchymal stem cell-derived exosomes in tumor progression","authors":"Carl RANDALL HARREL, Valentin Djonov, A. Volarević, D. Pavlovic, V. Volarevic","doi":"10.32604/biocell.2023.028567","DOIUrl":"https://doi.org/10.32604/biocell.2023.028567","url":null,"abstract":"","PeriodicalId":55384,"journal":{"name":"Biocell","volume":null,"pages":null},"PeriodicalIF":1.2,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"86444360","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
MELLT3 protects against cerebral ischemia-reperfusion (I/R) injury through up-regulation of m6A modification MELLT3通过上调m6A修饰对脑缺血再灌注(I/R)损伤具有保护作用
IF 1.2 4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.32604/biocell.2023.026016
Jing Jin, Xinghua Wang, Xiao-xiao Zheng, Jiahua Lan, Li Zheng, Yingjian Cai, Huixian Chen, Hongwei Wang, Lifang Zheng
{"title":"MELLT3 protects against cerebral ischemia-reperfusion (I/R) injury through up-regulation of m6A modification","authors":"Jing Jin, Xinghua Wang, Xiao-xiao Zheng, Jiahua Lan, Li Zheng, Yingjian Cai, Huixian Chen, Hongwei Wang, Lifang Zheng","doi":"10.32604/biocell.2023.026016","DOIUrl":"https://doi.org/10.32604/biocell.2023.026016","url":null,"abstract":"","PeriodicalId":55384,"journal":{"name":"Biocell","volume":null,"pages":null},"PeriodicalIF":1.2,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89075045","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Exploring the attenuation mechanisms of Dalbergia odorifera leaves extract on cerebral ischemia-reperfusion based on weighted gene co-expression network analysis 基于加权基因共表达网络分析探讨降香黄檀叶提取物对脑缺血再灌注的衰减机制
IF 1.2 4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.32604/biocell.2023.028684
Jinfang Hu, Jiang Ao, Longsheng Fu, Yaoqi Wu, Feng Shao, Tiantian Xu, Mingjin Jiang, Shaofeng Xiong, Yanni Lv
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引用次数: 0
The antioxidant trolox inhibits aging and enhances prostaglandin E-2 secretion in mesenchymal stem cells 抗氧化剂trolox抑制衰老,促进间充质干细胞分泌前列腺素E-2
IF 1.2 4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.32604/biocell.2023.025203
Xiaoxu Zhang, Lin Zhang, Lin Du, Huiyan Sun, Xia Zhao, Yang Sun, Wen Wang, Lisheng Wang
: Mesenchymal stem cells (MSCs) have been widely used in regenerative medicine and clinical therapy due to their capabilities of proliferation, differentiation, and immune regulation. However, during in vitro expansion, MSCs are prone to aging, which largely limits their application. Prostaglandin E-2 (PGE-2) is a key effector secreted by MSCs to exert immunomodulatory effects. By screening the compound library for PGE-2 secretion, the antioxidant trolox was veri fi ed as a stimulator of MSCs to secrete PGE-2. The effect of antioxidant trolox on biological characteristics of MSCS, including aging, proliferation, and gene expression, was examined. The results demonstrated that trolox can resist aging, promote proliferation, and enhance PGE-2 secretion of MSCs without affecting their surface marker expression. Furthermore, trolox treatment up-regulates miR-17-92 clusters in MSCs and may contribute to its anti-aging effects. Thus, trolox addition might be bene fi cial for MSCs expansion and their application.
间充质干细胞(Mesenchymal stem cells, MSCs)因其具有增殖、分化和免疫调节等功能而广泛应用于再生医学和临床治疗。然而,在体外培养过程中,MSCs容易老化,这在很大程度上限制了其应用。前列腺素E-2 (Prostaglandin E-2, PGE-2)是间充质干细胞分泌的发挥免疫调节作用的关键效应因子。通过筛选PGE-2分泌的化合物文库,证实了抗氧化剂trolox是MSCs分泌PGE-2的刺激物。研究了抗氧化剂trolox对MSCS老化、增殖和基因表达等生物学特性的影响。结果表明,trolox在不影响MSCs表面标记物表达的情况下,具有抗衰老、促进增殖、促进PGE-2分泌的作用。此外,trolox处理上调MSCs中的miR-17-92簇,并可能有助于其抗衰老作用。因此,加入trolox可能有利于MSCs的扩增和应用。
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引用次数: 0
Fang-Xia-Dihuang decoction inhibits breast cancer progression induced by psychological stress via down-regulation of PI3K/AKT and JAK2/STAT3 pathways: An in vivo and a network pharmacology assessment 方霞地黄汤通过下调PI3K/AKT和JAK2/STAT3通路抑制心理应激诱导的乳腺癌进展:体内和网络药理学评估
4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.32604/biocell.2023.030742
LINGYAN LV, JING ZHAO, XUAN WANG, LIUYAN XU, YINGYI FAN, CHUNHUI WANG, HONGQIAO FAN, XIAOHUA PEI
Background: The development and prognosis of breast cancer are intricately linked to psychological stress. In addition, depression is the most common psychological comorbidity among breast cancer survivors, and reportedly, Fang-Xia-Dihuang decoction (FXDH) can effectively manage depression in such patients. However, its pharmacological and molecular mechanisms remain obscure. Methods: Public databases were used for obtaining active components and related targets. Main active components were further verified by ultra-high-performance liquid chromatography-high-resolution mass spectrometry (UPLC-HRMS). Protein–protein interaction and enrichment analyses were taken to predict potential hub targets and related pathways. Molecule docking was used to understand the interactions between main compounds and hub targets. In addition, an animal model of breast cancer combined with depression was established to evaluate the intervention effect of FXDH and verify the pathways screened by network pharmacology. Results: 174 active components of FXDH and 163 intersection targets of FXDH, breast cancer, and depression were identified. Quercetin, methyl ferulate, luteolin, ferulaldehyde, wogonin, and diincarvilone were identified as the principal active components of FXDH. Protein–protein interaction and KEGG enrichment analyses revealed that the phosphoinositide-3-kinase–protein kinase B (PI3K/AKT) and Janus kinase/signal transducer and activator of transcription (JAK2/STAT3) signaling pathways played a crucial role in mediating the efficacy of FXDH for inhibiting breast cancer progression induced by depression. In addition, in vivo experiments revealed that FXDH ameliorated depression-like behavior in mice and inhibited excessive tumor growth in mice with breast cancer and depression. FXDH treatment downregulated the expression of epinephrine, PI3K, AKT, STAT3, and JAK2 compared with the control treatment (p < 0.05). Molecular docking verified the relationship between the six primary components of FXDH and the three most important targets, including phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha (PIK3CA), AKT, and STAT3. Conclusion: This study provides a scientific basis to support the clinical application of FXDH for improving depression-like behavior and inhibiting breast cancer progression promoted by chronic stress. The therapeutic effects FXDH may be closely related to the PI3K/AKT and JAK2/STAT3 pathways. This finding helps better understand the regulatory mechanisms underlying the efficacy of FXDH.
背景:乳腺癌的发展和预后与心理应激有着复杂的关系。此外,抑郁症是乳腺癌幸存者中最常见的心理合并症,据报道,方霞地黄汤(FXDH)可以有效地治疗这类患者的抑郁症。然而,其药理和分子机制尚不清楚。方法:利用公共数据库获取有效成分及相关靶点。通过超高效液相色谱-高分辨率质谱(UPLC-HRMS)进一步验证了主要有效成分。蛋白质相互作用和富集分析用于预测潜在的枢纽靶点和相关途径。分子对接用于了解主要化合物与枢纽靶点之间的相互作用。此外,建立乳腺癌合并抑郁症动物模型,评估FXDH的干预效果,验证网络药理学筛选的通路。结果:共鉴定出174种FXDH有效成分和163种FXDH与乳腺癌、抑郁症的交叉靶点。槲皮素、阿魏酸甲酯、木犀草素、阿魏醛、木犀草素和双威草酮是FXDH的主要活性成分。蛋白-蛋白相互作用和KEGG富集分析表明,磷酸肌醇-3-激酶-蛋白激酶B (PI3K/AKT)和Janus激酶/信号转导和转录激活因子(JAK2/STAT3)信号通路在FXDH抑制抑郁症诱导的乳腺癌进展的作用中发挥了重要作用。此外,体内实验显示,FXDH可以改善小鼠的抑郁样行为,抑制乳腺癌和抑郁症小鼠的过度肿瘤生长。与对照组相比,FXDH处理可下调肾上腺素、PI3K、AKT、STAT3、JAK2的表达(p < 0.05)。分子对接验证了FXDH的6个主要成分与磷脂酰肌醇-4,5-二磷酸3-激酶催化亚基α (PIK3CA)、AKT和STAT3这3个最重要的靶标之间的关系。结论:本研究为FXDH改善抑郁样行为、抑制慢性应激促进乳腺癌进展的临床应用提供了科学依据。FXDH的治疗作用可能与PI3K/AKT和JAK2/STAT3通路密切相关。这一发现有助于更好地理解FXDH功效背后的调控机制。
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引用次数: 0
The therapeutic mechanism of dexamethasone in lung injury induced by hydrogen sulfide 地塞米松治疗硫化氢所致肺损伤的机制
4区 生物学 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.32604/biocell.2023.029277
CHUNYANG XU, CAIYUN YANG, JINSONG ZHANG, XIAOHUA PAN, JUN WANG, LEI JIANG, HONGWEI YE, BO CHEN
Background: The lung is one of the primary target organs of hydrogen sulfide (H2S), as exposure to H2S can cause acute lung injury (ALI) and pulmonary edema. Dexamethasone (Dex) exerts a protective effect on ALI caused by exposure to toxic gases and is commonly used in the clinic; however, the underlying mechanisms remain elusive, and the dose is unclear. Methods: In vivo experiments: divided C57BL6 mice into 6 groups at random, 12 in each group. The mice were exposed to H2S for 3 h and 5 or 50 mg/kg Dex pretreated before exposure, sacrificed 12 h later. The morphological changes of HE staining and the ultrastructural changes of lungs under transmission electron microscopy were evaluated. The wet/dry ratio of lung tissue was measured. Bronchial alveolar lavage fluid (BALF) protein content and lung permeability index were detected. The expression of AQP5 protein was measured by immunohistochemistry and Western Blot (WB). In vitro experiments: divided human lung adenocarcinoma cell line A549 into 4 groups. 1 μmol/L dexamethasone was added to pre-incubation. The WB analyzed the protein of p-ERK1/2, p-JNK, and p-p38 in MAPK pathway after 1 h of NaHS exposure; six hours after NaHS exposure, the AQP5 protein was measured by WB. Results: Dex treatment could significantly attenuate the H2S-induced destruction to the alveolar wall, increase the wet-to-dry weight ratio and decrease pulmonary permeability index, with high-dose dexamethasone seemingly functioning better. Additionally, our previous studies showed that aquaporin 5 (AQP 5), a critical protein that regulates water flux, decreased both in a mouse and cell model following the exposure to H2S. This study indicates that tThe decrease in AQP 5 can be alleviated by Dex treatment. Additionally, the mitogen activated protein kinase (MAPK) pathway may be involved in the protective effects of Dex in ALI caused by exposure to H2S since H2S-induced MAPK activation could be inhibited by Dex. Conclusion: The present results indicate that AQP 5 may be considered a therapeutic target for Dex in H2S or other hazardous gases-induced ALI.
背景:肺是硫化氢(H2S)的主要靶器官之一,暴露于硫化氢可引起急性肺损伤(ALI)和肺水肿。地塞米松(Dexamethasone, Dex)对暴露于有毒气体引起的ALI有保护作用,在临床上常用;然而,潜在的机制仍然难以捉摸,剂量也不清楚。方法:体内实验:将C57BL6小鼠随机分为6组,每组12只。小鼠暴露于H2S 3 h,暴露前预处理5或50 mg/kg Dex, 12 h后处死。观察肺HE染色形态学变化及透射电镜下肺超微结构变化。测定肺组织干湿比。检测支气管肺泡灌洗液(BALF)蛋白含量及肺通透性指数。免疫组织化学和Western Blot检测AQP5蛋白的表达。体外实验:将人肺腺癌细胞A549分为4组。前孵育加1 μmol/L地塞米松。WB检测NaHS暴露1 h后MAPK通路p-ERK1/2、p-JNK、p-p38蛋白;NaHS暴露6 h后,WB测定AQP5蛋白。结果:地塞米松能显著减轻h2s对肺泡壁的破坏,提高肺干湿比,降低肺透性指数,且大剂量地塞米松效果更好。此外,我们之前的研究表明,在暴露于H2S后,小鼠和细胞模型中调节水通量的关键蛋白水通道蛋白5 (AQP 5)都减少了。本研究表明,右美托咪定治疗可缓解aqp5的下降。此外,丝裂原活化蛋白激酶(MAPK)通路可能参与了右美托咪唑对H2S引起的ALI的保护作用,因为H2S诱导的MAPK活化可以被右美托咪唑抑制。结论:aqp5可能是Dex在H2S或其他有害气体诱导的ALI中的治疗靶点。
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