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Particle swarm optimization based fusion of ultrasound echographic and elastographic texture features for improved breast cancer detection. 基于粒子群优化的超声和弹性纹理特征融合改进乳腺癌检测。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2019-09-01 Epub Date: 2019-06-03 DOI: 10.1007/s13246-019-00765-2
S Sasikala, M Bharathi, M Ezhilarasi, Sathiya Senthil, M Ramasubba Reddy

Breast cancer remains the main cause of cancer deaths among women in the world. As per the statistics, it is the most common killer disease of the new era. Since 2008, breast cancer incidences have increased by more than 20%, while mortality has increased by 14%. The statistics of breast cancer incidences as per GLOBOCAN project for the years 2008 and 2012 show an increase from 22.2 to 27% globally. In India, breast cancer accounts for 25% to 31% of all cancers in women. Mammography and Sonography are the two common imaging techniques used for the diagnosis and detection of breast cancer. Since Mammography fails to spot many cancers in the dense breast tissue of young patients, Sonography is preferred as an adjunct to Mammography to identify, characterize and localize breast lesions. This work aims to improve the performance of breast cancer detection by fusing the texture features from ultrasound elastographic and echographic images through Particle Swarm Optimization. The mean classification accuracy of Optimum Path Forest Classifier is used as an objective function in PSO. Seven performance metrics were computed to study the performance of the proposed technique using GLCM, GLDM, LAWs and LBP texture features through Support Vector Machine classifier. LBP feature provides accuracy, sensitivity, specificity, precision, F1 score, Mathews Correlation Coefficient and Balanced Classification Rate as 96.2%, 94.4%, 97.4%, 96.2%, 95.29%, 0.921, 95.88% respectively. The obtained performance using LBP feature is better compared to the other three features. An improvement of 6.18% in accuracy and 11.19% in specificity were achieved when compared to those obtained with previous works.

乳腺癌仍然是世界上妇女癌症死亡的主要原因。据统计,它是新时代最常见的致命疾病。自2008年以来,乳腺癌发病率增加了20%以上,死亡率增加了14%。根据GLOBOCAN项目2008年和2012年的乳腺癌发病率统计数据显示,全球乳腺癌发病率从22.2%增加到27%。在印度,乳腺癌占女性所有癌症的25%至31%。乳房x光检查和超声检查是诊断和检测乳腺癌的两种常用成像技术。由于乳房x光检查无法在年轻患者的致密乳腺组织中发现许多癌症,因此首选超声检查作为乳房x光检查的辅助手段来识别、表征和定位乳腺病变。本文旨在通过粒子群算法融合超声弹性成像和超声图像的纹理特征,提高乳腺癌检测的性能。在粒子群算法中,以最优路径森林分类器的平均分类精度作为目标函数。通过支持向量机分类器,利用GLCM、GLDM、LAWs和LBP纹理特征,计算7个性能指标来研究该技术的性能。LBP特征的准确率、灵敏度、特异性、精密度、F1评分、马修斯相关系数和平衡分类率分别为96.2%、94.4%、97.4%、96.2%、95.29%、0.921、95.88%。与其他三个特征相比,使用LBP特征获得的性能更好。与以往文献相比,准确度提高了6.18%,特异性提高了11.19%。
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引用次数: 15
Applying EMG technology in medial and lateral elbow enthesopathy treatment using Myo motion controller. 肌电图技术在Myo运动控制器治疗肘关节内侧和外侧神经痛中的应用。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2019-09-01 Epub Date: 2019-06-14 DOI: 10.1007/s13246-019-00770-5
Adam Grabczyński, Krzysztof Szklanny, Piotr Wrzeciono

Electromyography (EMG) is a diagnostic technique allowing for the detection of signals generated by changes in electrical potentials of striated muscles. The application of this technology is becoming an increasingly popular subject of scientific research. With the appearance of new devices retrieving EMG data, novel methods of its processing for various purposes are being developed. One such device is the Myo movement controller, produced by Thalmic Labs (now North). The device has been used for the analysis of muscle activation levels in patients with "tennis elbow" and "golfer's elbow"-conditions of upper limbs which usually result from occupational injuries. The process of their rehabilitation is complex and requires a continuous monitoring of its progress. The data obtained by means of the Myo controller was used for pattern recognition of an injured hand with relation to the healthy one. The study involved examining ten subjects, including five controls. The results indicate that the muscle activation force is considerably lower in injured individuals. The arithmetic mean for the 6 analyzed motions in the injured group is 38.54% lower. The SmartEMG application ( https://www.smartemg.com ) enables the implementation of procedures performed during an examination as well as those involved in the management of the collected recordings. The study produced satisfactory results, which indicates the possibility of using the Myo controller in the treatment of elbow enthesopathy.

肌电图(EMG)是一种诊断技术,允许检测由横纹肌电位变化产生的信号。该技术的应用正日益成为科学研究的热门课题。随着检索肌电数据的新设备的出现,用于各种目的的肌电数据处理的新方法正在开发。其中一个设备是Myo运动控制器,由Thalmic Labs(现为North)生产。该设备已被用于分析“网球肘”和“高尔夫肘”患者的肌肉激活水平——上肢通常由职业伤害引起。他们的康复过程是复杂的,需要不断监测其进展情况。通过Myo控制器获得的数据用于损伤手与健康手的模式识别。这项研究检查了10个受试者,包括5个对照组。结果表明,损伤个体的肌肉激活力明显降低。损伤组6个分析动作的算术平均值低38.54%。SmartEMG应用程序(https://www.smartemg.com)可以在检查过程中执行程序,也可以对收集的记录进行管理。该研究取得了满意的结果,这表明使用Myo控制器治疗肘关节神经病的可能性。
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引用次数: 6
Use of 3D biological effective dose (BED) for optimizing multi-target liver cancer treatments. 三维生物有效剂量(BED)用于优化多靶点肝癌治疗。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2019-09-01 Epub Date: 2019-07-11 DOI: 10.1007/s13246-019-00771-4
Kevin I Kauweloa, Angelo Bergamo, Alonso N Gutierrez, Sotiris Stathakis, Nikos Papanikolaou, Panayiotis Mavroidis

The purpose is to calculate the composite 3D biological effective dose (BED) distribution in healthy liver, when multiple lesions are treated concurrently with different hypo-fractionated schemes and stereotactic body radiation therapy, and to investigate the potential of biological based plan optimization. Two patients, each having two tumors that were treated sequentially with different treatment plans, were selected. The treatment information of both treatment plans of the patients was used and their dose matrices were exported to an in-house MATLAB software, which was used to calculate the composite BED distribution. The composite BED distributions were used to determine if the healthy liver received BED beyond tolerance. When the dose to the minimum critical volume was less than tolerance, an optimization code was used to derive the scaling factors (ScF) that should be applied to the dose matrix of each plan until the minimum critical volume of healthy liver reaches a BED close to tolerance. It was shown that for each patient, there is a margin for dose escalation regarding the doses to the individual targets. More specifically, the ScFs of the doses range between 5.6 and 99 in the first patient, whereas for the second patient, the ScFs of the optimal doses range between 12.7 and 35.6. The present study indicates that there is a significant margin for dose escalation without increasing the radiation toxicity to the healthy liver. Also, the calculation of the composite BED distribution can provide additional information that may lead to a better assessment of the liver's tolerance to different fractionation schemes and prescribed doses as well as more clinically relevant treatment plan optimization.

目的:计算不同低分割方案和立体定向体放射治疗同时治疗多个病变时,健康肝脏的复合三维生物有效剂量(BED)分布,探讨基于生物的方案优化的潜力。选择两名患者,每名患者有两个肿瘤,按顺序用不同的治疗方案进行治疗。使用患者两种治疗方案的治疗信息,并将其剂量矩阵导出到内部的MATLAB软件中,使用该软件计算复合BED分布。使用复合BED分布来确定健康肝脏是否接受了超过耐受性的BED。当最小临界体积剂量小于容量时,利用优化代码推导出各方案剂量矩阵应应用的比例因子(ScF),直至健康肝脏的最小临界体积达到接近容量的BED。结果表明,对于每个患者,针对个体靶标的剂量有剂量递增的幅度。更具体地说,在第一位患者中,剂量的scf范围在5.6至99之间,而对于第二位患者,最佳剂量的scf范围在12.7至35.6之间。目前的研究表明,在不增加对健康肝脏的辐射毒性的情况下,剂量递增有很大的余地。此外,计算复合BED分布可以提供额外的信息,从而更好地评估肝脏对不同分离方案和处方剂量的耐受性,以及更符合临床的治疗方案优化。
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引用次数: 2
Opportunities in space life sciences. 空间生命科学的机遇。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2019-09-01 DOI: 10.1007/s13246-019-00769-y
Jason Dowling, Anatoly Rosenfeld, James Waldie, Ilana Feain
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引用次数: 2
Comparison of muscle synergies extracted from both legs during cycling at different mechanical conditions. 在不同机械条件下骑车时双腿肌肉协同作用的比较。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2019-09-01 Epub Date: 2019-06-03 DOI: 10.1007/s13246-019-00767-0
Javad Esmaeili, Ali Maleki

Muscle synergies are the building blocks for generating movement by the central nervous system (CNS). According to this hypothesis, CNS decreases the complexity of motor control by combination of a small number of muscle synergies. The aim of this work is to investigate similarity of muscle synergies during cycling across various mechanical conditions. Twenty healthy subjects performed three 6- min cycling tasks at over a range of rotational speed (40, 50, and 60 rpm) and resistant torque (3, 5, and 7 N/m). Surface electromyography (sEMG) signals were recorded during pedaling from eight muscles of the right and left legs. We extracted four synchronous muscle synergies by using the non-negative matrix factorization (NMF) method. Mean and standard deviation of the goodness of the signal reconstruction (R2) for all subjects was obtained 0.9898 ± 0.0535. We investigated the functional roles of both leg muscles during cycling by synchronous muscle synergy extraction. We compared the muscle synergies extracted from all subjects in all mechanical conditions. The total mean and standard deviation of the similarity of synergy vectors for all subjects in all mechanical conditions was obtained 0.8788 ± 0.0709. We found the high degrees of similarity among the sets of synchronous muscle synergies across mechanical conditions and also across different subjects. Our results demonstrated that different subjects at different mechanical conditions use the same motor control strategies for cycling, despite inter-individual variability of muscle patterns.

肌肉协同作用是中枢神经系统(CNS)产生运动的基石。根据这一假说,中枢神经系统通过联合少量的肌肉协同作用来降低运动控制的复杂性。这项工作的目的是调查肌肉协同作用的相似性在不同的机械条件下循环。20名健康受试者在转速(40、50和60 rpm)和抗扭矩(3、5和7 N/m)范围内进行3次6分钟的循环任务。在蹬车过程中记录左、右腿8块肌肉的表面肌电图信号。采用非负矩阵分解(NMF)方法提取了四种同步肌肉协同效应。所有受试者的信号重构优度的均值和标准差(R2)为0.9898±0.0535。我们通过同步肌肉协同提取研究了两腿肌肉在自行车运动中的功能作用。我们比较了所有受试者在所有机械条件下提取的肌肉协同作用。所有被试在所有力学条件下协同向量相似度的总均值和标准差为0.8788±0.0709。我们发现同步肌肉协同作用在机械条件和不同科目之间具有高度的相似性。我们的研究结果表明,尽管个体之间的肌肉模式存在差异,但不同的受试者在不同的机械条件下使用相同的运动控制策略进行骑行。
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引用次数: 9
Improving automatic contrast agent extraction system using monochromatic CT number. 改进单色CT数造影剂自动提取系统。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2019-09-01 Epub Date: 2019-05-20 DOI: 10.1007/s13246-019-00762-5
Daisuke Kawahara, Shuichi Ozawa, Kazushi Yokomachi, Toru Higaki, Chikako Fujioka, Masayoshi Mori, Yasushi Nagata

In a previous study, a phantom study of a contrast agent extraction system with computed tomography (CT) number and raw-data-based electron density (ED) was described. The current study improved this system with monochromatic CT (mCT) number and evaluated an anthropomorphic phantom for delineation of the contrast-enhanced region. Dual-energy CT images were scanned with a tissue-equivalent phantom and an anthropomorphic phantom with an iodinated contrast agent (1-130 mg/mL). The 40, 70, and 130 keV mCT images were reconstructed with 80 and 135 kV CT images. The contrast agent was separated from other materials using the gradient of the mCT number (GmCT) and the threshold mCT numbers. The system was analyzed using in-house software with Python. The evaluation of the accuracy for the contrast agent extraction was performed by measuring the ratio of the volume (ROV). The mCT number of the contrast agent and bone materials, liver, and muscle in the tissue-equivalent phantom was obviously greater than - 78 HU. The deviation of the mCT numbers between bone materials in tissue-equivalent phantom and the contrast agent were larger than 8 HU. The GmCT was within 4.0 in the tissue-equivalent phantom and more than 6.0 in the contrast agent. The ROV was 0.97-1.00 at more than 1 mg/mL contrast agent. Improved the contrast agent extraction system could be used for a patient's CT image. It could extract the iodinated tumor or lesion automatically. The contrast agent extraction system was improved by the mCT number. It is expected to only extract the contrast-enhanced region automatically.

在之前的一项研究中,描述了一种基于计算机断层扫描(CT)数和原始数据的电子密度(ED)的造影剂提取系统的模拟研究。目前的研究用单色CT (mCT)数字改进了这个系统,并评估了一个拟人化的幻像来描绘对比度增强区域。双能CT图像扫描组织等效幻像和拟人化幻像,碘化造影剂(1-130 mg/mL)。用80、135 kV CT图像重建40、70、130 kV mCT图像。利用mCT数梯度(GmCT)和阈值mCT数将造影剂与其他材料分离。使用内部软件Python对系统进行分析。通过测量体积比(ROV)来评价造影剂提取的准确性。造影剂与骨材料、肝脏、肌肉在组织等效幻象中的mCT数明显大于- 78 HU。组织等效模体骨材料与造影剂的mCT值偏差大于8 HU。GmCT在组织等效幻象中在4.0以内,在造影剂中在6.0以上。造影剂大于1 mg/mL时,ROV为0.97 ~ 1.00。改进的对比剂提取系统可用于患者的CT图像。它能自动提取碘化肿瘤或病变。通过mCT数对造影剂提取体系进行了改进。期望只自动提取对比度增强的区域。
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引用次数: 1
Journal name change. 日志名称更改。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2019-09-01 DOI: 10.1007/s13246-019-00776-z
Jamie Trapp
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引用次数: 1
Simplifying the human lumbar spine (L3/L4) material in order to create an elemental structure for the future modeling. 简化人体腰椎(L3/L4)材料,为未来的建模创造一个基本结构。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2019-09-01 Epub Date: 2019-06-10 DOI: 10.1007/s13246-019-00768-z
Neda Salsabili, Joaquín Santiago López, María Isabel Prieto Barrio

The human lumbar spine incorporates the best joints in nature due to its optimal static and dynamic behavior against the internal and external loads. Developing an elemental structure based on this joint requires simplification in terms of the materials employed by keeping the mechanical and anatomical behaviors of the human lumbar spine. In the present study, the finite element (FE) of two motion segments of the human lumbar spine (L3/L4) was developed based on the CT scan data as the base for vertebrae geometry, verified geometry properties for another part of two motion segments, and combination of materials and loads obtained from the validated resources. Then, simplification occurred in four continuous steps such as omitting the annual fibers of annual matrix, representing the material of the annual matrix to the nucleus, demonstrating the material of annual matrix to the endplates too, and omitting the trabecular part of vertebrae. The present study aimed to propose the method for developing the basic structure of the human lumbar spine by simplifying its materials in the above-mentioned steps, analyzing the biomechanical effects of these four steps in terms of their internal and external responses, and validating the data obtained from the FE method. The validated simplified way introduced in this study can be used for future research by making implants, prosthesis, and modeling based on the human lumbar spine in other fields such as industrial design, building structures, or joints, which results in making the model easier, cheaper, and more effective.

人类腰椎结合了自然界中最好的关节,因为它具有最佳的静态和动态行为,可以抵抗内部和外部负载。在这个关节的基础上发展一个基本的结构,需要在保持人类腰椎的机械和解剖行为所使用的材料方面进行简化。在本研究中,基于CT扫描数据作为椎骨几何的基础,开发了人类腰椎(L3/L4)两个运动节段的有限元(FE),验证了两个运动节段另一部分的几何特性,以及从验证资源中获得的材料和载荷的组合。然后,通过省略年轮基质纤维、将年轮基质的物质表示到核、将年轮基质的物质也表示到终板、省略椎骨小梁部分四个连续步骤进行简化。本研究旨在提出通过简化上述4个步骤的材料来发育人体腰椎基本结构的方法,分析这4个步骤的内外反应的生物力学效应,并验证有限元方法得到的数据。本研究中引入的经过验证的简化方法可以用于未来的研究,在工业设计、建筑结构或关节等其他领域制作基于人体腰椎的植入物、假体和建模,从而使模型更容易、更便宜、更有效。
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引用次数: 5
Biological surface electromyographic switch and necklace-type button switch control as an augmentative and alternative communication input device: a feasibility study. 生物表面肌电开关与项链式按钮开关控制作为一种补充性和替代性的通讯输入装置:可行性研究。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2019-09-01 Epub Date: 2019-06-03 DOI: 10.1007/s13246-019-00766-1
DongGeon Lee, SeungJun Lee, Kuem Ju Lee, GyuChang Lee

Augmentative and alternative communication (AAC) is an approach used to supplement, improve, and support the communication of those with speech or language impairments. We developed an AAC device for diverse approaches, using an electromyographic (EMG) switch and a necklace-type button switch. The EMG switch comprised an EMG signal processor and a switch interface processor. EMG signals were processed using an electrode through the stages of signal acquisition, amplification, filtering, rectification, and smoothing. In the switch interface processor, the microprocessor determined the switch as ON or OFF in response to an input EMG signal and then converted the EMG signal into a keyboard signal, which was transmitted to a smart device via Bluetooth communication. A similar transmission process was used for the necklace-type button switch, and switch signals were input and processed with general-purpose input/output. The first and second feasibility tests for the EMG switch and button switch were conducted in a total of three test sessions. The result of the feasibility test indicated that the major inconvenience and desired improvement associated with the EMG switch were the intricacy of the AAC device settings. The major inconveniences and desired improvements for the necklace-type button switch involved device shifting, volume and weight, and inconvenience in fixing the switch in various directions. Thus, based on the first and second feasibility tests, we developed an additional device. Finally, the EMG switch and necklace-type button switch developed to remedy the inconveniencies had high feasibility.

辅助和替代沟通(AAC)是一种用于补充、改善和支持言语障碍患者沟通的方法。我们开发了一种AAC装置,用于多种方法,使用肌电图(EMG)开关和项链式按钮开关。肌电开关包括肌电信号处理器和开关接口处理器。通过电极对肌电信号进行采集、放大、滤波、整流和平滑处理。在开关接口处理器中,微处理器根据输入的肌电信号确定开关为ON或OFF,然后将肌电信号转换为键盘信号,通过蓝牙通信传输到智能设备。项链式按钮开关采用类似的传输过程,开关信号采用通用输入/输出方式输入和处理。对肌电开关和按钮开关进行了第一次和第二次可行性试验,共进行了三次试验。可行性测试的结果表明,与肌电开关相关的主要不便和期望的改进是AAC设备设置的复杂性。项链式按钮开关的主要缺点和需要改进的地方包括设备移动、体积和重量,以及在不同方向上固定开关不方便。因此,在第一次和第二次可行性测试的基础上,我们开发了一个额外的设备。最后,开发的肌电开关和项链式按钮开关弥补了这些不便,具有较高的可行性。
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引用次数: 2
Measurements of in-air spot size of pencil proton beam for various air gaps in conjunction with a range shifter on a ProteusPLUS PBS dedicated machine and comparison to the proton dose calculation algorithms. 结合ProteusPLUS PBS专用机器上的范围移位器测量各种气隙下铅笔状质子束的空中点尺寸,并与质子剂量计算算法进行比较。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2019-09-01 Epub Date: 2019-06-20 DOI: 10.1007/s13246-019-00772-3
Suresh Rana, E James Jebaseelan Samuel

The purpose of this study is to (i) investigate the impact of various air gaps in conjunction with a range shifter of 7.5 cm water-equivalent-thickness (WET) on in-air spot size of a pencil proton beam at the isocenter and off-axis points, and (ii) compare the treatment planning system (TPS) calculated spot sizes against the measured spot sizes. A scintillation detector has been utilized to measure the in-air spot sizes at the isocenter. The air gap was varied from 0 to 35 cm at an increment of 5 cm. For each air gap, a single spot pencil proton beam of various energies (110-225 MeV) was delivered to the scintillation detector. By mimicking the experimental setup in RayStation TPS, proton dose calculations were performed using pencil beam (RS-PB) and Monte Carlo (RS-MC) dose calculation algorithms. The calculated spot sizes (RS-PB and RS-MC) were then compared against the measured spot sizes. For a comparative purpose, the spot sizes of each measured energy for different air gaps of (5-35 cm) were compared against that of 0 cm air gap. The results of the 5 cm air gap showed an increase in spot size by ≤ 0.6 mm for all energies. For the largest air gap (35 cm) in the current study, the spot size increased by 3.0 mm for the highest energy (225 MeV) and by 9.2 mm for the lowest energy (110 MeV). For the 0 cm air gap, the agreement between the TPS-calculated (RS-PB and RS-MC) and measured spot sizes were within ± 0.1 mm. For the 35 cm air gap, the RS-PB overpredicted spot sizes by 0.3-0.8 mm, whereas the RS-MC computed spot sizes were within ± 0.3 mm of measured spot sizes. In conclusion, spot size increment is dependent on the energy and air gap. The increase in spot size was more pronounced at lower energies ( < 150 MeV) for all air gaps. The comparison between the TPS calculated and measured spot sizes showed that the RS-MC is more accurate (within ± 0.3 mm), whereas the RS-PB overpredicted (up to 0.8 mm) the spot sizes when a range shifter (7.5 cm WET) and large air gaps are encountered in the proton beam path.

本研究的目的是:(i)研究各种气隙与7.5 cm水当量厚度的范围移位器(WET)对铅笔状质子束在等中心和离轴点的空气中光斑大小的影响,以及(ii)比较处理计划系统(TPS)计算的光斑大小与测量的光斑大小。利用闪烁探测器测量了等心处的空气光斑大小。气隙变化范围为0 ~ 35 cm,每增加5 cm。对于每个气隙,一个不同能量(110-225 MeV)的单点铅笔质子束被传送到闪烁探测器。通过模拟RayStation TPS中的实验设置,使用铅笔束(RS-PB)和蒙特卡罗(RS-MC)剂量计算算法进行质子剂量计算。然后将计算的光斑大小(RS-PB和RS-MC)与测量的光斑大小进行比较。为了进行比较,将(5-35 cm)不同气隙下每个测量能量的光斑大小与0 cm气隙下的光斑大小进行了比较。5cm气隙的结果表明,在所有能量下,光斑尺寸增加≤0.6 mm。对于目前研究中最大的气隙(35 cm),光斑尺寸在最高能量(225 MeV)时增加了3.0 mm,在最低能量(110 MeV)时增加了9.2 mm。对于0 cm气隙,tps计算(RS-PB和RS-MC)与实测光斑尺寸的一致性在±0.1 mm以内。对于35 cm气隙,RS-PB对光斑尺寸的预测过高了0.3 ~ 0.8 mm,而RS-MC计算的光斑尺寸与实测值的误差在±0.3 mm以内。综上所述,光斑尺寸增量取决于能量和气隙。光斑尺寸的增加在较低能量时更为明显(
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引用次数: 9
期刊
Australasian Physical & Engineering Sciences in Medicine
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