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Insights Gained from Including People in Our Models of Nature and Modes of Science 将人类纳入我们的自然模式和科学模式所获得的启示
IF 17.3 1区 地球科学 Q1 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2024-09-17 DOI: 10.1146/annurev-marine-021523-105524
Anne K. Salomon, Iain McKechnie
Across the natural sciences, humans are typically conceptualized as external disruptors of nature rather than adaptable components of it. Historical evidence, however, challenges this dominant schema. Here, we describe the broad repertoire of ecological functions performed by people in place-based societies across the Pacific Ocean over millennia, illustrating their roles as ecosystem engineers, dispersers, bioturbators, nutrient cyclers, predators, and herbivores. By considering the reciprocal relationships between people and the ecosystems within which they are embedded, evidence of humanity's ability to experiment, learn, adapt, innovate, and sustain diverse and resilient social–ecological relationships emerges. Therefore, recognizing people as inseparable components of marine ecosystems and their millennia of engagement with coastal ocean spaces is critical to both understanding marine ecosystems and devising resilient and equitable ocean policies.
在整个自然科学领域,人类通常被视为大自然的外部破坏者,而不是大自然中可适应的组成部分。然而,历史证据挑战了这一主流模式。在这里,我们描述了千百年来人类在太平洋上以地方为基础的社会中所发挥的广泛的生态功能,说明了人类作为生态系统工程师、散布者、生物扰动者、营养循环者、捕食者和食草动物所扮演的角色。通过考虑人类与其所处生态系统之间的互惠关系,可以证明人类有能力进行实验、学习、适应、创新,并维持多样化、有弹性的社会生态关系。因此,认识到人类是海洋生态系统不可分割的组成部分,认识到人类与沿海海洋空间千百年来的互动关系,对于理解海洋生态系统和制定具有复原力和公平的海洋政策至关重要。
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引用次数: 0
How Big Is Big? The Effective Population Size of Marine Bacteria 有多大?海洋细菌的有效种群规模
IF 17.3 1区 地球科学 Q1 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2024-09-17 DOI: 10.1146/annurev-marine-050823-104415
Haiwei Luo
Genome-reduced bacteria constitute most of the cells in surface-ocean bacterioplankton communities. Their extremely large census population sizes (Nc) have been unfoundedly translated to huge effective population sizes (Ne)—the size of an ideal population carrying as much neutral genetic diversity as the actual population. As Ne scales inversely with the strength of genetic drift, constraining the magnitude of Ne is key to evaluating whether natural selection can overcome the power of genetic drift to drive evolutionary events. Determining the Ne of extant species requires measuring the genomic mutation rate, a challenging step for most genome-reduced bacterioplankton lineages. Results for genome-reduced Prochlorococcus and CHUG are surprising—their Ne values are an order of magnitude lower than those of less abundant lineages carrying large genomes, such as Ruegeria and Vibrio. As bacterioplankton genome reduction commonly occurred in the distant past, appreciating their population genetic mechanisms requires constraining their ancient Ne values by other methods.
减少基因组的细菌构成了海洋表层浮游细菌群落中的大部分细胞。它们极其庞大的普查种群规模(Nc)被毫无根据地转化为巨大的有效种群规模(Ne)--即理想种群的规模,其携带的中性遗传多样性与实际种群一样多。由于 Ne 与遗传漂变的强度成反比,因此限制 Ne 的大小是评估自然选择是否能克服遗传漂变驱动进化事件的关键。确定现存物种的 Ne 值需要测量基因组突变率,这对大多数基因组还原的浮游细菌系来说是一个具有挑战性的步骤。基因组还原的原绿球藻和 CHUG 的结果令人吃惊--它们的 Ne 值比 Ruegeria 和弧菌等携带大基因组的不太丰富的菌系的 Ne 值低一个数量级。由于浮游细菌基因组的减少通常发生在遥远的过去,要了解它们的种群遗传机制,就需要用其他方法来限制它们的古 Ne 值。
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引用次数: 0
Metabolic Flux Modeling in Marine Ecosystems 海洋生态系统代谢通量建模
IF 17.3 1区 地球科学 Q1 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2024-09-11 DOI: 10.1146/annurev-marine-032123-033718
Helen Scott, Daniel Segrè
Ocean metabolism constitutes a complex, multiscale ensemble of biochemical reaction networks harbored within and between the boundaries of a myriad of organisms. Gaining a quantitative understanding of how these networks operate requires mathematical tools capable of solving in silico the resource allocation problem each cell faces in real life. Toward this goal, stoichiometric modeling of metabolism, such as flux balance analysis, has emerged as a powerful computational tool for unraveling the intricacies of metabolic processes in microbes, microbial communities, and multicellular organisms. Here, we provide an overview of this approach and its applications, future prospects, and practical considerations in the context of marine sciences. We explore how flux balance analysis has been employed to study marine organisms, help elucidate nutrient cycling, and predict metabolic capabilities within diverse marine environments, and highlight future prospects for this field in advancing our knowledge of marine ecosystems and their sustainability.
海洋新陈代谢是一个复杂的、多尺度的生化反应网络集合体,蕴藏在无数生物体的内部和边界之间。要从数量上了解这些网络是如何运作的,就需要有数学工具,能够从硅学角度解决每个细胞在现实生活中面临的资源分配问题。为实现这一目标,新陈代谢的计量建模(如通量平衡分析)已成为揭示微生物、微生物群落和多细胞生物中错综复杂的新陈代谢过程的强大计算工具。在此,我们将概述这种方法及其在海洋科学中的应用、未来前景和实际考虑因素。我们将探讨如何利用通量平衡分析来研究海洋生物、帮助阐明养分循环和预测不同海洋环境中的代谢能力,并强调这一领域在促进我们对海洋生态系统及其可持续性的了解方面的未来前景。
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引用次数: 0
Feedbacks Regulating the Salinization of Coastal Landscapes 调节沿海景观盐碱化的反馈作用
IF 17.3 1区 地球科学 Q1 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2024-09-11 DOI: 10.1146/annurev-marine-070924-031447
Matthew L. Kirwan, Holly A. Michael, Keryn B. Gedan, Katherine L. Tully, Sergio Fagherazzi, Nate G. McDowell, Grace D. Molino, Dannielle Pratt, William G. Reay, Stephanie Stotts
The impact of saltwater intrusion on coastal forests and farmland is typically understood as sea-level-driven inundation of a static terrestrial landscape, where ecosystems neither adapt to nor influence saltwater intrusion. Yet recent observations of tree mortality and reduced crop yields have inspired new process-based research into the hydrologic, geomorphic, biotic, and anthropogenic mechanisms involved. We review several negative feedbacks that help stabilize ecosystems in the early stages of salinity stress (e.g., reduced water use and resource competition in surviving trees, soil accretion, and farmland management). However, processes that reduce salinity are often accompanied by increases in hypoxia and other changes that may amplify saltwater intrusion and vegetation shifts after a threshold is exceeded (e.g., subsidence following tree root mortality). This conceptual framework helps explain observed rates of vegetation change that are less than predicted for a static landscape while recognizing the inevitability of large-scale change.
盐水入侵对沿海森林和农田的影响通常被理解为海平面对静态陆地景观的淹没,生态系统既不适应也不影响盐水入侵。然而,最近对树木死亡和农作物减产的观测结果激发了人们对相关的水文、地貌、生物和人为机制进行新的基于过程的研究。我们回顾了有助于在盐度胁迫早期阶段稳定生态系统的几种负反馈(例如,存活树木减少用水和资源竞争、土壤增生和农田管理)。然而,降低盐度的过程往往伴随着缺氧和其他变化的增加,这些变化可能会在超过阈值后加剧盐水入侵和植被变化(例如,树根死亡后的沉降)。这一概念框架有助于解释观测到的植被变化率低于静态景观的预测值,同时也认识到大规模变化的必然性。
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引用次数: 0
Coral Disease: Direct and Indirect Agents, Mechanisms of Disease, and Innovations for Increasing Resistance and Resilience. 珊瑚疾病:直接和间接媒介、疾病机理以及增强抵抗力和复原力的创新方法。
IF 14.3 1区 地球科学 Q1 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2024-09-03 DOI: 10.1146/annurev-marine-011123-102337
Rebecca L Vega Thurber, Denise Silva, Lauren Speare, Aldo Croquer, Alex J Veglia, Lorenzo Alvarez-Filip, Jesse R Zaneveld, Erinn M Muller, Adrienne M S Correa

As climate change drives health declines of tropical reef species, diseases are further eroding ecosystem function and habitat resilience. Coral disease impacts many areas around the world, removing some foundation species to recorded low levels and thwarting worldwide efforts to restore reefs. What we know about coral disease processes remains insufficient to overcome many current challenges in reef conservation, yet cumulative research and management practices are revealing new disease agents (including bacteria, viruses, and eukaryotes), genetic host disease resistance factors, and innovative methods to prevent and mitigate epizootic events (probiotics, antibiotics, and disease resistance breeding programs). The recent outbreak of stony coral tissue loss disease across the Caribbean has reenergized and mobilized the research community to think bigger and do more. This review therefore focuses largely on novel emerging insights into the causes and mechanisms of coral disease and their applications to coral restoration and conservation.

随着气候变化导致热带珊瑚礁物种健康状况下降,疾病正在进一步侵蚀生态系统的功能和栖息地的恢复能力。珊瑚疾病影响着全球许多地区,使一些基础物种的数量减少到有记录以来的最低水平,并阻碍了全球恢复珊瑚礁的努力。我们对珊瑚疾病过程的了解仍然不足以克服当前珊瑚礁保护中的许多挑战,然而,不断积累的研究和管理实践正在揭示新的疾病病原体(包括细菌、病毒和真核生物)、遗传宿主抗病因子以及预防和缓解流行病事件的创新方法(益生菌、抗生素和抗病育种计划)。最近在整个加勒比海地区爆发的石珊瑚组织缺失症为研究界注入了新的活力,促使他们想得更多,做得更多。因此,本综述主要关注珊瑚疾病的成因和机制及其在珊瑚恢复和保护中的应用。
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引用次数: 0
How Does the Ocean Melt Antarctic Ice Shelves? 海洋是如何融化南极冰架的?
IF 14.3 1区 地球科学 Q1 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2024-09-03 DOI: 10.1146/annurev-marine-040323-074354
Madelaine G Rosevear, Bishakhdatta Gayen, Catherine A Vreugdenhil, Benjamin K Galton-Fenzi

The present-day state and future of the Antarctic Ice Sheet depend on the rate at which the ocean melts its fringing ice shelves. Ocean heat must cross many physical and dynamical barriers to melt ice shelves, with the last of these being the ice-ocean boundary layer. This review summarizes the current understanding of ice-ocean boundary-layer dynamics, focusing on recent progress from laboratory experiments, turbulence-resolving numerical simulations, novel observations, and the application to large-scale simulations. The complex interplay between buoyant meltwater and external processes such as current shear leads to the emergence of several melting regimes that we describe, as well as freezing processes. The remaining challenges include developing new parameterizations for large-scale ice-ocean models based on recent advances and understanding the coevolution of melt and basal topography.

南极冰原的现状和未来取决于海洋融化其边缘冰架的速度。海洋热量必须穿越许多物理和动力学障碍才能融化冰架,其中最后一个障碍就是冰-海边界层。本综述总结了目前对冰洋边界层动力学的理解,重点介绍了实验室实验、湍流解析数值模拟、新观测以及大规模模拟应用等方面的最新进展。浮力融水与海流切变等外部过程之间复杂的相互作用导致出现了我们所描述的几种融化状态以及冻结过程。剩下的挑战包括根据最新进展为大规模冰-海模型开发新的参数,以及理解融化和基底地形的共同演变。
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引用次数: 0
The Serendipity of Discovery: Life of a Geochemist. 发现的偶然性:地球化学家的生活
IF 14.3 1区 地球科学 Q1 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2024-08-27 DOI: 10.1146/annurev-marine-050823-103645
Willard S Moore

My strategy for writing this autobiography is to use examples of how working on seemingly different projects can often lead to outcomes more important than originally envisioned. Serendipity is a happy accident-specifically, the accident of discovering something useful without directly looking for it. This often occurs when two research projects converge unexpectedly. The main text contains examples of how serendipity has led me to important discoveries, including (a) finding surprisingly high 228Ra activities in the ocean; (b) developing a means of rapidly and quantitatively extracting radium from seawater; (c) devising a rapid, sensitive method of measuring 224Ra and 223Ra; (d) realizing the scale and biogeochemical importance of submarine groundwater discharge; and (e) conceiving a method to estimate the total flux of submarine groundwater discharge to the Atlantic Ocean. The Supplemental Material fleshes out details of these discoveries and places them in the context of my other investigations.

我写这本自传的策略是,用一些例子来说明,在看似不同的项目上开展工作,往往会产生比最初设想更重要的结果。偶然性是一种快乐的意外,具体地说,就是在没有直接寻找的情况下发现了有用的东西。当两个研究项目不期而遇时,往往会出现这种情况。正文中举例说明了偶然性是如何引导我获得重要发现的,其中包括:(a) 发现海洋中 228Ra 活性出奇地高;(b) 开发出一种快速定量提取海水中镭的方法;(c) 设计出一种快速灵敏测量 224Ra 和 223Ra 的方法;(d) 认识到海底地下水排放的规模和生物地球化学重要性;(e) 构想出一种估算海底地下水排放到大西洋的总通量的方法。补充材料充实了这些发现的细节,并将其与我的其他研究结合起来。
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引用次数: 0
Improving Ocean Management Using Insights from Space. 利用太空洞察力改进海洋管理。
IF 14.3 1区 地球科学 Q1 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2024-08-19 DOI: 10.1146/annurev-marine-050823-120619
Douglas J McCauley, Samantha Andrzejaczek, Barbara A Block, Kyle C Cavanaugh, Hannah C Cubaynes, Elliott L Hazen, Chuanmin Hu, David Kroodsma, Jiwei Li, Hillary S Young

Advancements in space-based ocean observation and computational data processing techniques have demonstrated transformative value for managing living resources, biodiversity, and ecosystems of the ocean. We synthesize advancements in leveraging satellite-derived insights to better understand and manage fishing, an emerging revolution of marine industrialization, ocean hazards, sea surface dynamics, benthic ecosystems, wildlife via electronic tracking, and direct observations of ocean megafauna. We consider how diverse space-based data sources can be better coupled to modernize and improve ocean management. We also highlight examples of how data from space can be developed into tools that can aid marine decision-makers managing subjects from whales to algae. Thoughtful and prospective engagement with such technologies from those inside and outside the marine remote sensing community is, however, essential to ensure that these tools meet their full potential to strengthen the effectiveness of ocean management.

天基海洋观测和计算数据处理技术的进步为管理海洋生物资源、生物多样性和生态系统带来了变革性价值。我们综述了利用卫星数据更好地了解和管理渔业、海洋工业化的新兴革命、海洋灾害、海面动力学、海底生态系统、通过电子追踪的野生动物以及对海洋巨型动物的直接观测等方面的进展。我们将考虑如何将各种天基数据源更好地结合起来,使海洋管理现代化并得到改善。我们还重点举例说明如何将空间数据开发成工具,帮助海洋决策者管理从鲸鱼到藻类等各种主题。然而,海洋遥感界内外人士对此类技术的深思熟虑和前瞻性参与,对于确保这些工具充分发挥潜力,提高海洋管理的有效性至关重要。
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引用次数: 0
Standardized Methods to Assess the Impacts of Thermal Stress on Coral Reef Marine Life. 评估热应力对珊瑚礁海洋生物影响的标准化方法。
IF 14.3 1区 地球科学 Q1 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2024-08-08 DOI: 10.1146/annurev-marine-032223-024511
Christian R Voolstra, Rachel Alderdice, Luigi Colin, Sebastian Staab, Amy Apprill, Jean-Baptiste Raina

The Earth's oceans have absorbed more than 90% of the excess, climate change-induced atmospheric heat. The resulting rise in oceanic temperatures affects all species and can lead to the collapse of marine ecosystems, including coral reefs. Here, we review the range of methods used to measure thermal stress impacts on reef-building corals, highlighting current standardization practices and necessary refinements to fast-track discoveries and improve interstudy comparisons. We also present technological developments that will undoubtedly enhance our ability to record and analyze standardized data. Although we use corals as an example, the methods described are widely employed in marine sciences, and our recommendations therefore apply to all species and ecosystems. Enhancing collaborative data collection efforts, implementing field-wide standardized protocols, and ensuring data availability through dedicated, openly accessible databases will enable large-scale analysis and monitoring of ecosystem changes, improving our predictive capacities and informing active intervention to mitigate climate change effects on marine life.

地球海洋吸收了 90% 以上由气候变化引起的大气热量。由此导致的海洋温度上升影响到所有物种,并可能导致包括珊瑚礁在内的海洋生态系统崩溃。在此,我们回顾了用于测量热应力对造礁珊瑚影响的各种方法,重点介绍了当前的标准化实践和必要的改进措施,以快速跟踪发现并改进研究间的比较。我们还介绍了技术发展情况,这些发展无疑将提高我们记录和分析标准化数据的能力。虽然我们以珊瑚为例,但所述方法在海洋科学中广泛使用,因此我们的建议适用于所有物种和生态系统。加强合作性数据收集工作、实施全领域标准化规程、确保通过专用、可公开访问的数据库提供数据,将有助于对生态系统变化进行大规模分析和监测,提高我们的预测能力,并为积极干预提供信息,以减轻气候变化对海洋生物的影响。
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引用次数: 0
The Desiccation and Catastrophic Refilling of the Mediterranean: 50 Years of Facts, Hypotheses, and Myths Around the Messinian Salinity Crisis. 地中海的干涸和灾难性回填:围绕梅西尼亚盐度危机的50年事实、假说和神话》(The Desiccation and Catastrophic Refilling of the Mediterranean: 50 Years of Facts, Hypotheses, and Myths Around the Messinian Salinity Crisis)。
IF 14.3 1区 地球科学 Q1 GEOCHEMISTRY & GEOPHYSICS Pub Date : 2024-08-06 DOI: 10.1146/annurev-marine-021723-110155
Marco Roveri, Stefano Lugli, Vinicio Manzi

According to some authors, the Messinian salinity crisis was ended by a giant waterfall or megaflood 5.33 million years ago, when the Atlantic Ocean reconnected in a catastrophic way with the desiccated Mediterranean, creating the Strait of Gibraltar. An erosional surface deeply cutting upper Miocene or older rocks and sealed by lower Pliocene sediments is the geological feature that inspired this fascinating hypothesis. The hypothesis, which recalls several ancient myths, is well established in the scientific community and often considered to be a fact. However, several studies are suggesting that the Atlantic-Mediterranean connection through the Strait of Gibraltar was probably active before and during the entire Messinian salinity crisis. This allows us to consider the possibility that long-lived, more gradual physical processes were responsible for the evolution of the strait, opening the idea of a nondesiccated Mediterranean Sea.

一些学者认为,533 万年前,大西洋与干涸的地中海以灾难性的方式重新连接,形成了直布罗陀海峡,一场巨大的瀑布或特大洪水结束了梅西尼亚盐度危机。一个深深切割上新世或更古老的岩石,并被下新世沉积物封住的侵蚀面是激发这一迷人假说的地质特征。这一假说让人联想起几个古老的神话,在科学界已广为流传,并经常被认为是一个事实。然而,一些研究表明,在整个梅西尼亚盐度危机之前和期间,通过直布罗陀海峡连接大西洋和地中海的通道很可能是活跃的。这使我们能够考虑这样一种可能性,即该海峡的演变是由长期的、更渐进的物理过程造成的,从而开启了地中海非干涸化的设想。
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引用次数: 0
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Annual Review of Marine Science
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