Exploring conformational landscape of two-dimensional (2D) macromolecules poses a profound challenge due to their intrinsically complex free energy surfaces. Conventional computational approaches based on equilibrium molecular dynamics (MD) suffer from limited ergodic exploration, failing to adequately explore energy landscapes and transition pathways between metastable conformations. In this study, we employ well-tempered Metadynamics simulations with carefully designed collective variables to comprehensively map conformational space of 2D macromolecules. Our systematic exploration reveals three distinct metastable states, i.e., flat, fold and scroll conformations. Through detailed free energy analysis, we elucidate the delicate interplay between bending rigidity and interlayer adhesion that govern free energy surfaces of these conformations. Furthermore, we propose a temperature-modulated strategy to regulate conformational transitions among the three states. By decomposing the total free energy into entropic and enthalpic contributions, we quantitatively characterize the temperature-dependent thermodynamic driving forces underlying conformational transformations. This research establishes a robust computational framework for quantifying free energy and entropy associated with metastable conformations in 2D macromolecule systems. Our findings advance fundamental understanding of conformational transitions, regulation processes, and self-assembly behaviors in 2D macromolecular systems.
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