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An Automatic and End-to-End System for Rare Disease Knowledge Graph Construction Based on Ontology-Enhanced Large Language Models: Development Study. 基于本体增强大语言模型的罕见病知识图谱端到端自动构建系统研究。
IF 3.1 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2024-12-18 DOI: 10.2196/60665
Lang Cao, Jimeng Sun, Adam Cross
<p><strong>Background: </strong>Rare diseases affect millions worldwide but sometimes face limited research focus individually due to low prevalence. Many rare diseases do not have specific International Classification of Diseases, Ninth Edition (ICD-9) and Tenth Edition (ICD-10), codes and therefore cannot be reliably extracted from granular fields like "Diagnosis" and "Problem List" entries, which complicates tasks that require identification of patients with these conditions, including clinical trial recruitment and research efforts. Recent advancements in large language models (LLMs) have shown promise in automating the extraction of medical information, offering the potential to improve medical research, diagnosis, and management. However, most LLMs lack professional medical knowledge, especially concerning specific rare diseases, and cannot effectively manage rare disease data in its various ontological forms, making it unsuitable for these tasks.</p><p><strong>Objective: </strong>Our aim is to create an end-to-end system called automated rare disease mining (AutoRD), which automates the extraction of rare disease-related information from medical text, focusing on entities and their relations to other medical concepts, such as signs and symptoms. AutoRD integrates up-to-date ontologies with other structured knowledge and demonstrates superior performance in rare disease extraction tasks. We conducted various experiments to evaluate AutoRD's performance, aiming to surpass common LLMs and traditional methods.</p><p><strong>Methods: </strong>AutoRD is a pipeline system that involves data preprocessing, entity extraction, relation extraction, entity calibration, and knowledge graph construction. We implemented this system using GPT-4 and medical knowledge graphs developed from the open-source Human Phenotype and Orphanet ontologies, using techniques such as chain-of-thought reasoning and prompt engineering. We quantitatively evaluated our system's performance in entity extraction, relation extraction, and knowledge graph construction. The experiment used the well-curated dataset RareDis2023, which contains medical literature focused on rare disease entities and their relations, making it an ideal dataset for training and testing our methodology.</p><p><strong>Results: </strong>On the RareDis2023 dataset, AutoRD achieved an overall entity extraction F1-score of 56.1% and a relation extraction F1-score of 38.6%, marking a 14.4% improvement over the baseline LLM. Notably, the F1-score for rare disease entity extraction reached 83.5%, indicating high precision and recall in identifying rare disease mentions. These results demonstrate the effectiveness of integrating LLMs with medical ontologies in extracting complex rare disease information.</p><p><strong>Conclusions: </strong>AutoRD is an automated end-to-end system for extracting rare disease information from text to build knowledge graphs, addressing critical limitations of existing LLMs by impr
背景:罕见病影响全世界数百万人,但由于发病率低,有时个别研究重点有限。许多罕见疾病没有特定的《国际疾病分类》第九版(ICD-9)和第十版(ICD-10)代码,因此无法可靠地从诸如“诊断”和“问题清单”条目等颗粒字段中提取,这使得需要识别患有这些疾病的患者的任务(包括临床试验招募和研究工作)变得复杂。大型语言模型(llm)的最新进展显示出在自动提取医学信息方面的前景,为改善医学研究、诊断和管理提供了潜力。然而,大多数法学硕士缺乏专业的医学知识,特别是关于特定罕见病的知识,不能有效地管理各种本体论形式的罕见病数据,不适合这些任务。目的:我们的目标是创建一个端到端的系统,称为自动化罕见病挖掘(AutoRD),该系统可以从医学文本中自动提取罕见病相关信息,重点关注实体及其与其他医学概念(如体征和症状)的关系。AutoRD将最新的本体与其他结构化知识集成在一起,并在罕见疾病提取任务中表现出卓越的性能。我们进行了各种实验来评估AutoRD的性能,旨在超越常见的llm和传统方法。方法:AutoRD是一个涉及数据预处理、实体提取、关系提取、实体标定、知识图谱构建的流水线系统。我们使用GPT-4和从开源的人类表型和孤儿本体开发的医学知识图实现了这个系统,使用了思维链推理和提示工程等技术。我们定量地评估了系统在实体提取、关系提取和知识图谱构建方面的性能。实验使用了精心策划的数据集RareDis2023,其中包含了关注罕见疾病实体及其关系的医学文献,使其成为训练和测试我们方法的理想数据集。结果:在RareDis2023数据集上,AutoRD实现了56.1%的整体实体提取f1得分和38.6%的关系提取f1得分,比基线LLM提高了14.4%。值得注意的是,罕见病实体提取的f1得分达到83.5%,表明罕见病提及识别的准确率和召回率很高。这些结果证明了将llm与医学本体相结合在提取复杂罕见病信息方面的有效性。结论:AutoRD是一个自动化的端到端系统,用于从文本中提取罕见疾病信息以构建知识图谱,通过改进这些疾病的识别并将其与相关临床特征联系起来,解决了现有llm的关键局限性。这项工作强调了法学硕士在改变医疗保健方面的巨大潜力,特别是在罕见疾病领域。通过利用本体增强的法学硕士,AutoRD构建了一个强大的医学知识库,其中包含最新的罕见疾病信息,促进了对患者的识别,并导致更具包容性的研究和试验候选工作。
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引用次数: 0
Information Mode-Dependent Success Rates of Obtaining German Medical Informatics Initiative-Compliant Broad Consent in the Emergency Department: Single-Center Prospective Observational Study. 德国医学信息学倡议在急诊科广泛同意:一项评估同意模式依赖成功率的单中心前瞻性观察研究。
IF 3.1 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2024-12-17 DOI: 10.2196/65646
Felix Patricius Hans, Jan Kleinekort, Melanie Boerries, Alexandra Nieters, Gerhard Kindle, Micha Rautenberg, Laura Bühler, Gerda Weiser, Michael Clemens Röttger, Carolin Neufischer, Matthias Kühn, Julius Wehrle, Anna Slagman, Antje Fischer-Rosinsky, Larissa Eienbröker, Frank Hanses, Gisbert Wilhelm Teepe, Hans-Jörg Busch, Leo Benning
<p><strong>Background: </strong>The broad consent (BC) developed by the German Medical Informatics Initiative is a pivotal national strategy for obtaining patient consent to use routinely collected data from electronic health records, insurance companies, contact information, and biomaterials for research. Emergency departments (EDs) are ideal for enrolling diverse patient populations in research activities. Despite regulatory and ethical challenges, obtaining BC from patients in ED with varying demographic, socioeconomic, and disease characteristics presents a promising opportunity to expand the availability of ED data.</p><p><strong>Objective: </strong>This study aimed to evaluate the success rate of obtaining BC through different consenting approaches in a tertiary ED and to explore factors influencing consent and dropout rates.</p><p><strong>Methods: </strong>A single-center prospective observational study was conducted in a German tertiary ED from September to December 2022. Every 30th patient was screened for eligibility. Eligible patients were informed via one of three modalities: (1) directly in the ED, (2) during their inpatient stay on the ward, or (3) via telephone after discharge. The primary outcome was the success rate of obtaining BC within 30 days of ED presentation. Secondary outcomes included analyzing potential influences on the success and dropout rates based on patient characteristics, information mode, and the interaction time required for patients to make an informed decision.</p><p><strong>Results: </strong>Of 11,842 ED visits, 419 patients were screened for BC eligibility, with 151 meeting the inclusion criteria. Of these, 68 (45%) consented to at least 1 BC module, while 24 (15.9%) refused participation. The dropout rate was 39.1% (n=59) and was highest in the telephone-based group (57/109, 52.3%) and lowest in the ED group (1/14, 7.1%). Patients informed face-to-face during their inpatient stay following the ED treatment had the highest consent rate (23/27, 85.2%), while those approached in the ED or by telephone had consent rates of 69.2% (9/13 and 36/52). Logistic regression analysis indicated that longer interaction time significantly improved consent rates (P=.03), while female sex was associated with higher dropout rates (P=.02). Age, triage category, billing details (inpatient treatment), or diagnosis did not significantly influence the primary outcome (all P>.05).</p><p><strong>Conclusions: </strong>Obtaining BC in an ED environment is feasible, enabling representative inclusion of ED populations. However, discharge from the ED and female sex negatively affected consent rates to the BC. Face-to-face interaction proved most effective, particularly for inpatients, while telephone-based approaches resulted in higher dropout rates despite comparable consent rates to direct consenting in the ED. The findings underscore the importance of tailored consent strategies and maintaining consenting staff in EDs and on the war
背景:德国医学信息学倡议(MII)制定的广泛同意(BC)是一份国家蓝图,用于同意患者为研究目的使用常规收集的医疗、保险和联系数据和生物材料,确保遵守欧洲一般数据保护条例(GDPR)。急诊科(EDs)的特点是患者群体广泛且未经选择,这为来自不同人口统计学和社会经济群体以及不同疾病群体的患者提供了机会。虽然也提出了监管和伦理方面的挑战,但在ED环境中获得BC为增加ED数据的研究可用性提供了一个有希望的机会。目的:本研究旨在评估高等教育ED通过不同同意方式获得BC的成功率,并探讨影响同意率和辍学率的因素。方法:于2022年9月至12月在德国某高等急诊科进行单中心前瞻性观察研究。随机选择患者(每30例患者)并筛选是否有资格被告知BC。符合条件的患者通过以下三种方式之一获得通知:(a)直接在急诊科,(b)住院期间,或(c)出院后通过电话。主要结果是ED出现后30天内获得BC的成功率。次要结果包括分析患者特征、信息模式和信息交互时间对成功率和辍学率的潜在影响。结果:在研究期间的11,842例ED就诊中,419例患者被随机筛选为BC资格,其中151例符合纳入标准。其中,68名患者(45.0%)同意至少一个BC模块,24名患者(15.9%)拒绝参与。总体辍学率为39.1%,其中以电话为基础的组辍学率最高(52.3%),ED组最低(7.1%)。在急诊科治疗后住院期间面对面告知的患者同意率最高(85.2%),而在急诊科或通过电话接触的患者同意率为69.2%。Logistic回归分析表明,较长的互动时间与较高的同意率显著相关,而女性与辍学率增加相关。在同意组和不同意组之间,在年龄、分诊类别、账单细节(住院治疗)或诊断分布方面没有发现显著差异。结论:在ED环境下获得BC是可行的,并且显示了ED人群的代表性纳入。然而,从急诊科出院和女性对获得同意进行BC的几率有负面影响。面对面的互动大大提高了同意率,似乎是最有希望的方法,同意住院病人。相反,基于电话的方法导致更高的辍学率,但与急诊科的直接同意率相同。该研究强调了定制同意策略的必要性,表明在急诊科和病房保持工作人员提供BC信息并获得符合条件的患者的同意是有益的。临床试验:该研究已获得弗莱堡大学当地伦理委员会批准(22-1202-S1),并在德国试验注册中心注册(DRKS00028753)。我们对收集并存储在本地电子健康记录(EHR)中的假名常规数据进行了所有分析。该研究被纳入了一项评估不同同意环境下BC的多中心研究(NUM-CODEX-Plus, DRKS00030054)。
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引用次数: 0
Enhancing Standardized and Structured Recording by Elderly Care Physicians for Reusing Electronic Health Record Data: Interview Study. 加强老年护理医生的标准化和结构化记录,以重复使用电子健康记录数据:访谈研究。
IF 3.1 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2024-12-13 DOI: 10.2196/63710
Charlotte A W Albers, Yvonne Wieland-Jorna, Martine C de Bruijne, Martin Smalbrugge, Karlijn J Joling, Marike E de Boer

Background: Elderly care physicians (ECPs) in nursing homes document patients' health, medical conditions, and the care provided in electronic health records (EHRs). However, much of these health data currently lack structure and standardization, limiting their potential for health information exchange across care providers and reuse for quality improvement, policy development, and scientific research. Enhancing this potential requires insight into the attitudes and behaviors of ECPs toward standardized and structured recording in EHRs.

Objective: This study aims to answer why and how ECPs record their findings in EHRs and what factors influence them to record in a standardized and structured manner. The findings will be used to formulate recommendations aimed at enhancing standardized and structured data recording for the reuse of EHR data.

Methods: Semistructured interviews were conducted with 13 ECPs working in Dutch nursing homes. We recruited participants through purposive sampling, aiming for diversity in age, gender, health care organization, and use of EHR systems. Interviews continued until we reached data saturation. Analysis was performed using inductive thematic analysis.

Results: ECPs primarily use EHRs to document daily patient care, ensure continuity of care, and fulfill their obligation to record specific information for accountability purposes. The EHR serves as a record to justify their actions in the event of a complaint. In addition, some respondents also mentioned recording information for secondary purposes, such as research and quality improvement. Several factors were found to influence standardized and structured recording. At a personal level, it is crucial to experience the added value of standardized and structured recording. At the organizational level, clear internal guidelines and a focus on their implementation can have a substantial impact. At the level of the EHR system, user-friendliness, interoperability, and guidance were most frequently mentioned as being important. At a national level, the alignment of internal guidelines with overarching standards plays a pivotal role in encouraging standardized and structured recording.

Conclusions: The results of our study are similar to the findings of previous research in hospital care and general practice. Therefore, long-term care can learn from solutions regarding standardized and structured recording in other health care sectors. The main motives for ECPs to record in EHRs are the daily patient care and ensuring continuity of care. Standardized and structured recording can be improved by aligning the recording method in EHRs with the primary care process. In addition, there are incentives for motivating ECPs to record in a standardized and structured way, mainly at the personal, organizational, EHR system, and national levels.

背景:疗养院的老年保健医生(ECPs)会在电子健康记录(EHRs)中记录患者的健康状况、医疗条件和所提供的护理。然而,目前这些健康数据大多缺乏结构性和标准化,限制了它们在不同护理提供者之间进行健康信息交流以及在质量改进、政策制定和科学研究中重复使用的潜力。要提高这种潜力,就必须深入了解电子病历中电子病历提供者对标准化和结构化记录的态度和行为:本研究旨在回答电子病历中的电子病历记录员为何及如何记录他们的检查结果,以及哪些因素会影响他们以标准化和结构化的方式进行记录。研究结果将用于制定相关建议,以加强标准化和结构化数据记录,促进电子健康记录数据的再利用:我们对在荷兰养老院工作的 13 名电子病历记录员进行了结构化访谈。我们通过有目的的抽样调查来招募参与者,目的是在年龄、性别、医疗机构和电子病历系统使用方面实现多样性。访谈一直持续到数据饱和为止。分析采用归纳式主题分析法:电子病历主要用于记录病人的日常护理,确保护理的连续性,并履行记录特定信息的义务,以达到问责的目的。电子病历可作为投诉时证明其行为合理性的记录。此外,一些受访者还提到记录信息的第二目的,如研究和质量改进。有几个因素会影响标准化和结构化的记录。在个人层面,体验标准化和结构化记录的附加值至关重要。在组织层面,明确的内部指导方针和对其实施的重视会产生重大影响。在电子病历系统层面,用户友好性、互操作性和指导是最常被提及的重要因素。在国家层面,内部指南与总体标准的一致性在鼓励标准化和结构化记录方面发挥着关键作用:我们的研究结果与之前在医院护理和全科实践中的研究结果相似。因此,长期护理可以借鉴其他医疗保健部门有关标准化和结构化记录的解决方案。电子病历记录的主要动机是日常病人护理和确保护理的连续性。通过使电子健康记录的记录方法与基础护理流程相一致,可以改进标准化和结构化的记录。此外,还可从个人、组织、电子健康记录系统和国家层面激励电子病历管理员以标准化和结构化的方式进行记录。
{"title":"Enhancing Standardized and Structured Recording by Elderly Care Physicians for Reusing Electronic Health Record Data: Interview Study.","authors":"Charlotte A W Albers, Yvonne Wieland-Jorna, Martine C de Bruijne, Martin Smalbrugge, Karlijn J Joling, Marike E de Boer","doi":"10.2196/63710","DOIUrl":"10.2196/63710","url":null,"abstract":"<p><strong>Background: </strong>Elderly care physicians (ECPs) in nursing homes document patients' health, medical conditions, and the care provided in electronic health records (EHRs). However, much of these health data currently lack structure and standardization, limiting their potential for health information exchange across care providers and reuse for quality improvement, policy development, and scientific research. Enhancing this potential requires insight into the attitudes and behaviors of ECPs toward standardized and structured recording in EHRs.</p><p><strong>Objective: </strong>This study aims to answer why and how ECPs record their findings in EHRs and what factors influence them to record in a standardized and structured manner. The findings will be used to formulate recommendations aimed at enhancing standardized and structured data recording for the reuse of EHR data.</p><p><strong>Methods: </strong>Semistructured interviews were conducted with 13 ECPs working in Dutch nursing homes. We recruited participants through purposive sampling, aiming for diversity in age, gender, health care organization, and use of EHR systems. Interviews continued until we reached data saturation. Analysis was performed using inductive thematic analysis.</p><p><strong>Results: </strong>ECPs primarily use EHRs to document daily patient care, ensure continuity of care, and fulfill their obligation to record specific information for accountability purposes. The EHR serves as a record to justify their actions in the event of a complaint. In addition, some respondents also mentioned recording information for secondary purposes, such as research and quality improvement. Several factors were found to influence standardized and structured recording. At a personal level, it is crucial to experience the added value of standardized and structured recording. At the organizational level, clear internal guidelines and a focus on their implementation can have a substantial impact. At the level of the EHR system, user-friendliness, interoperability, and guidance were most frequently mentioned as being important. At a national level, the alignment of internal guidelines with overarching standards plays a pivotal role in encouraging standardized and structured recording.</p><p><strong>Conclusions: </strong>The results of our study are similar to the findings of previous research in hospital care and general practice. Therefore, long-term care can learn from solutions regarding standardized and structured recording in other health care sectors. The main motives for ECPs to record in EHRs are the daily patient care and ensuring continuity of care. Standardized and structured recording can be improved by aligning the recording method in EHRs with the primary care process. In addition, there are incentives for motivating ECPs to record in a standardized and structured way, mainly at the personal, organizational, EHR system, and national levels.</p>","PeriodicalId":56334,"journal":{"name":"JMIR Medical Informatics","volume":"12 ","pages":"e63710"},"PeriodicalIF":3.1,"publicationDate":"2024-12-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11681280/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142823015","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Survival After Radical Cystectomy for Bladder Cancer: Development of a Fair Machine Learning Model. 膀胱癌根治性切除术后的生存率:开发公平的机器学习模型
IF 3.1 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2024-12-13 DOI: 10.2196/63289
Samuel Carbunaru, Yassamin Neshatvar, Hyungrok Do, Katie Murray, Rajesh Ranganath, Madhur Nayan

Background: Prediction models based on machine learning (ML) methods are being increasingly developed and adopted in health care. However, these models may be prone to bias and considered unfair if they demonstrate variable performance in population subgroups. An unfair model is of particular concern in bladder cancer, where disparities have been identified in sex and racial subgroups.

Objective: This study aims (1) to develop a ML model to predict survival after radical cystectomy for bladder cancer and evaluate for potential model bias in sex and racial subgroups; and (2) to compare algorithm unfairness mitigation techniques to improve model fairness.

Methods: We trained and compared various ML classification algorithms to predict 5-year survival after radical cystectomy using the National Cancer Database. The primary model performance metric was the F1-score. The primary metric for model fairness was the equalized odds ratio (eOR). We compared 3 algorithm unfairness mitigation techniques to improve eOR.

Results: We identified 16,481 patients; 23.1% (n=3800) were female, and 91.5% (n=15,080) were "White," 5% (n=832) were "Black," 2.3% (n=373) were "Hispanic," and 1.2% (n=196) were "Asian." The 5-year mortality rate was 75% (n=12,290). The best naive model was extreme gradient boosting (XGBoost), which had an F1-score of 0.860 and eOR of 0.619. All unfairness mitigation techniques increased the eOR, with correlation remover showing the highest increase and resulting in a final eOR of 0.750. This mitigated model had F1-scores of 0.86, 0.904, and 0.824 in the full, Black male, and Asian female test sets, respectively.

Conclusions: The ML model predicting survival after radical cystectomy exhibited bias across sex and racial subgroups. By using algorithm unfairness mitigation techniques, we improved algorithmic fairness as measured by the eOR. Our study highlights the role of not only evaluating for model bias but also actively mitigating such disparities to ensure equitable health care delivery. We also deployed the first web-based fair ML model for predicting survival after radical cystectomy.

背景:基于机器学习(ML)方法的预测模型正被越来越多地开发和应用于医疗保健领域。然而,如果这些模型在人口亚群中表现出不同的性能,则可能容易产生偏差,并被认为是不公平的。不公平模型在膀胱癌中尤其令人担忧,因为在膀胱癌中已发现性别和种族亚群存在差异:本研究旨在:(1) 建立一个预测膀胱癌根治性膀胱切除术后生存率的 ML 模型,并评估性别和种族亚群中潜在的模型偏差;(2) 比较算法不公平性缓解技术,以提高模型的公平性:我们使用国家癌症数据库训练并比较了各种 ML 分类算法,以预测根治性膀胱切除术后的 5 年生存率。模型性能的主要指标是 F1 分数。模型公平性的主要指标是均衡几率比(eOR)。我们比较了 3 种算法不公平性缓解技术,以改善 eOR:我们确定了16481名患者,其中23.1%(n=3800)为女性,91.5%(n=15080)为 "白人",5%(n=832)为 "黑人",2.3%(n=373)为 "西班牙裔",1.2%(n=196)为 "亚裔"。5 年死亡率为 75%(n=12,290)。最佳天真模型是极端梯度提升模型(XGBoost),其 F1 分数为 0.860,eOR 为 0.619。所有不公平缓解技术都提高了 eOR,其中相关去除技术的 eOR 提高幅度最大,最终达到 0.750。在完整测试集、黑人男性测试集和亚裔女性测试集中,该减轻模型的 F1 分数分别为 0.86、0.904 和 0.824:结论:预测根治性膀胱切除术后存活率的 ML 模型在不同性别和种族亚群中存在偏差。通过使用算法不公平缓解技术,我们改善了以eOR衡量的算法公平性。我们的研究强调,不仅要评估模型偏差,还要积极缓解这种差异,以确保医疗服务的公平性。我们还部署了首个基于网络的公平 ML 模型,用于预测根治性膀胱切除术后的存活率。
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引用次数: 0
Information Source Characteristics of Personal Data Leakage During the COVID-19 Pandemic in China: Observational Study. 中国 COVID-19 大流行期间个人数据泄露的信息源特征:观察研究。
IF 3.1 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2024-12-10 DOI: 10.2196/51219
Zhong Wang, Fangru Hu, Jie Su, Yuyao Lin

Background: During the COVID-19 pandemic, in the period of preventing and controlling the spread of the virus, a large amount of personal data was collected in China, and privacy leakage incidents occurred.

Objective: We aimed to examine the information source characteristics of personal data leakage during the COVID-19 pandemic in China.

Methods: We extracted information source characteristics of 40 personal data leakage cases using open coding and analyzed the data with 1D and 2D matrices.

Results: In terms of organizational characteristics, data leakage cases mainly occurred in government agencies below the prefecture level, while few occurred in the medical system or in high-level government organizations. The majority of leakers were regular employees or junior staff members rather than temporary workers or senior managers. Family WeChat groups were the primary route for disclosure; the forwarding of documents was the main method of divulgence, while taking screenshots and pictures made up a comparatively smaller portion.

Conclusions: We propose the following suggestions: restricting the authority of nonmedical institutions and low-level government agencies to collect data, strengthening training for low-level employees on privacy protection, and restricting the flow of data on social media through technical measures.

背景:新冠肺炎疫情期间,在疫情防控期间,中国境内大量个人数据被收集,隐私泄露事件时有发生。目的:探讨新冠肺炎疫情期间中国个人数据泄露的信息源特征。方法:采用开放式编码提取40例个人数据泄露案例的信息源特征,并对数据进行一维和二维矩阵分析。结果:从组织特征来看,数据泄露事件主要发生在地级以下政府机构,医疗系统和高层政府机构发生较少。大多数泄密者是正式员工或初级职员,而不是临时工或高级管理人员。家庭论坛是披露信息的主要途径;文件转发是泄露的主要方式,截图和图片所占比例相对较小。结论:我们提出以下建议:限制非医疗机构和基层政府机构收集数据的权限,加强对基层员工隐私保护的培训,并通过技术措施限制数据在社交媒体上的流动。
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引用次数: 0
Development, Implementation, and Evaluation Methods for Dashboards in Health Care: Scoping Review. 医疗保健仪表板的开发、实施和评估方法:范围审查。
IF 3.1 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2024-12-10 DOI: 10.2196/59828
Danielle Helminski, Jeremy B Sussman, Paul N Pfeiffer, Alex N Kokaly, Allison Ranusch, Anjana Deep Renji, Laura J Damschroder, Zach Landis-Lewis, Jacob E Kurlander

Background: Dashboards have become ubiquitous in health care settings, but to achieve their goals, they must be developed, implemented, and evaluated using methods that help ensure they meet the needs of end users and are suited to the barriers and facilitators of the local context.

Objective: This scoping review aimed to explore published literature on health care dashboards to characterize the methods used to identify factors affecting uptake, strategies used to increase dashboard uptake, and evaluation methods, as well as dashboard characteristics and context.

Methods: MEDLINE, Embase, Web of Science, and the Cochrane Library were searched from inception through July 2020. Studies were included if they described the development or evaluation of a health care dashboard with publication from 2018-2020. Clinical setting, purpose (categorized as clinical, administrative, or both), end user, design characteristics, methods used to identify factors affecting uptake, strategies to increase uptake, and evaluation methods were extracted.

Results: From 116 publications, we extracted data for 118 dashboards. Inpatient (45/118, 38.1%) and outpatient (42/118, 35.6%) settings were most common. Most dashboards had ≥2 stated purposes (84/118, 71.2%); of these, 54 of 118 (45.8%) were administrative, 43 of 118 (36.4%) were clinical, and 20 of 118 (16.9%) had both purposes. Most dashboards included frontline clinical staff as end users (97/118, 82.2%). To identify factors affecting dashboard uptake, half involved end users in the design process (59/118, 50%); fewer described formative usability testing (26/118, 22%) or use of any theory or framework to guide development, implementation, or evaluation (24/118, 20.3%). The most common strategies used to increase uptake included education (60/118, 50.8%); audit and feedback (59/118, 50%); and advisory boards (54/118, 45.8%). Evaluations of dashboards (84/118, 71.2%) were mostly quantitative (60/118, 50.8%), with fewer using only qualitative methods (6/118, 5.1%) or a combination of quantitative and qualitative methods (18/118, 15.2%).

Conclusions: Most dashboards forego steps during development to ensure they suit the needs of end users and the clinical context; qualitative evaluation-which can provide insight into ways to improve dashboard effectiveness-is uncommon. Education and audit and feedback are frequently used to increase uptake. These findings illustrate the need for promulgation of best practices in dashboard development and will be useful to dashboard planners.

背景:仪表板在医疗保健环境中已经无处不在,但要实现其目标,必须使用有助于确保其满足最终用户需求并适合当地环境障碍和促进因素的方法来开发、实施和评估仪表板。目的:本综述旨在探讨已发表的关于医疗保健仪表板的文献,以描述用于确定影响仪表板吸收因素的方法、用于增加仪表板吸收的策略、评估方法以及仪表板特征和背景。方法:检索MEDLINE、Embase、Web of Science和Cochrane Library从成立到2020年7月。如果研究描述了2018-2020年发布的医疗保健仪表板的开发或评估,则将其纳入研究。提取了临床环境、目的(分类为临床、行政或两者)、最终用户、设计特征、用于确定影响摄取因素的方法、增加摄取的策略和评估方法。结果:从116篇出版物中,我们提取了118个仪表板的数据。住院(45/118,38.1%)和门诊(42/118,35.6%)最常见。大多数仪表板有≥2个规定的用途(84/118,71.2%);其中,54 / 118(45.8%)为行政目的,43 / 118(36.4%)为临床目的,20 / 118(16.9%)兼有两种目的。大多数仪表板将一线临床工作人员作为最终用户(97/118,82.2%)。为了确定影响仪表板使用的因素,一半的人在设计过程中涉及最终用户(59/ 118,50%);较少描述形成性可用性测试(26/ 118,22%)或使用任何理论或框架来指导开发、实现或评估(24/ 118,20.3%)。提高吸收率的最常见策略包括教育(60/ 118,50.8%);审核和反馈(59/ 118,50%);顾问委员会(54/118,45.8%)。对仪表板的评价以定量评价为主(60/118,50.8%),仅定性评价为主(6/118,5.1%)或定量与定性结合评价较少(18/118,15.2%)。结论:大多数仪表板在开发过程中放弃了一些步骤,以确保它们符合最终用户和临床环境的需求;定性评估——可以提供改进仪表板有效性的方法——是不常见的。经常使用教育、审计和反馈来增加吸收。这些发现说明了在仪表板开发中颁布最佳实践的必要性,并将对仪表板规划者有用。
{"title":"Development, Implementation, and Evaluation Methods for Dashboards in Health Care: Scoping Review.","authors":"Danielle Helminski, Jeremy B Sussman, Paul N Pfeiffer, Alex N Kokaly, Allison Ranusch, Anjana Deep Renji, Laura J Damschroder, Zach Landis-Lewis, Jacob E Kurlander","doi":"10.2196/59828","DOIUrl":"10.2196/59828","url":null,"abstract":"<p><strong>Background: </strong>Dashboards have become ubiquitous in health care settings, but to achieve their goals, they must be developed, implemented, and evaluated using methods that help ensure they meet the needs of end users and are suited to the barriers and facilitators of the local context.</p><p><strong>Objective: </strong>This scoping review aimed to explore published literature on health care dashboards to characterize the methods used to identify factors affecting uptake, strategies used to increase dashboard uptake, and evaluation methods, as well as dashboard characteristics and context.</p><p><strong>Methods: </strong>MEDLINE, Embase, Web of Science, and the Cochrane Library were searched from inception through July 2020. Studies were included if they described the development or evaluation of a health care dashboard with publication from 2018-2020. Clinical setting, purpose (categorized as clinical, administrative, or both), end user, design characteristics, methods used to identify factors affecting uptake, strategies to increase uptake, and evaluation methods were extracted.</p><p><strong>Results: </strong>From 116 publications, we extracted data for 118 dashboards. Inpatient (45/118, 38.1%) and outpatient (42/118, 35.6%) settings were most common. Most dashboards had ≥2 stated purposes (84/118, 71.2%); of these, 54 of 118 (45.8%) were administrative, 43 of 118 (36.4%) were clinical, and 20 of 118 (16.9%) had both purposes. Most dashboards included frontline clinical staff as end users (97/118, 82.2%). To identify factors affecting dashboard uptake, half involved end users in the design process (59/118, 50%); fewer described formative usability testing (26/118, 22%) or use of any theory or framework to guide development, implementation, or evaluation (24/118, 20.3%). The most common strategies used to increase uptake included education (60/118, 50.8%); audit and feedback (59/118, 50%); and advisory boards (54/118, 45.8%). Evaluations of dashboards (84/118, 71.2%) were mostly quantitative (60/118, 50.8%), with fewer using only qualitative methods (6/118, 5.1%) or a combination of quantitative and qualitative methods (18/118, 15.2%).</p><p><strong>Conclusions: </strong>Most dashboards forego steps during development to ensure they suit the needs of end users and the clinical context; qualitative evaluation-which can provide insight into ways to improve dashboard effectiveness-is uncommon. Education and audit and feedback are frequently used to increase uptake. These findings illustrate the need for promulgation of best practices in dashboard development and will be useful to dashboard planners.</p>","PeriodicalId":56334,"journal":{"name":"JMIR Medical Informatics","volume":"12 ","pages":"e59828"},"PeriodicalIF":3.1,"publicationDate":"2024-12-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11651422/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142830920","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Advancing Progressive Web Applications to Leverage Medical Imaging for Visualization of Digital Imaging and Communications in Medicine and Multiplanar Reconstruction: Software Development and Validation Study. 推进渐进式Web应用程序以利用医学成像实现医学和多平面重建中的数字成像和通信的可视化:软件开发和验证研究。
IF 3.1 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2024-12-09 DOI: 10.2196/63834
Mohammed A AboArab, Vassiliki T Potsika, Alexis Theodorou, Sylvia Vagena, Miltiadis Gravanis, Fragiska Sigala, Dimitrios I Fotiadis
<p><strong>Background: </strong>In medical imaging, 3D visualization is vital for displaying volumetric organs, enhancing diagnosis and analysis. Multiplanar reconstruction (MPR) improves visual and diagnostic capabilities by transforming 2D images from computed tomography (CT) and magnetic resonance imaging into 3D representations. Web-based Digital Imaging and Communications in Medicine (DICOM) viewers integrated into picture archiving and communication systems facilitate access to pictures and interaction with remote data. However, the adoption of progressive web applications (PWAs) for web-based DICOM and MPR visualization remains limited. This paper addresses this gap by leveraging PWAs for their offline access and enhanced performance.</p><p><strong>Objective: </strong>This study aims to evaluate the integration of DICOM and MPR visualization into the web using PWAs, addressing challenges related to cross-platform compatibility, integration capabilities, and high-resolution image reconstruction for medical image visualization.</p><p><strong>Methods: </strong>Our paper introduces a PWA that uses a modular design for enhancing DICOM and MPR visualization in web-based medical imaging. By integrating React.js and Cornerstone.js, the application offers seamless DICOM image processing, ensures cross-browser compatibility, and delivers a responsive user experience across multiple devices. It uses advanced interpolation techniques to make volume reconstructions more accurate. This makes MPR analysis and visualization better in a web environment, thus promising a substantial advance in medical imaging analysis.</p><p><strong>Results: </strong>In our approach, the performance of DICOM- and MPR-based PWAs for medical image visualization and reconstruction was evaluated through comprehensive experiments. The application excelled in terms of loading time and volume reconstruction, particularly in Google Chrome, whereas Firefox showed superior performance in viewing slices. This study uses a dataset comprising 22 CT scans of peripheral artery patients to demonstrate the application's robust performance, with Google Chrome outperforming other browsers in both the local area network and wide area network settings. In addition, the application's accuracy in MPR reconstructions was validated with an error margin of <0.05 mm and outperformed the state-of-the-art methods by 84% to 98% in loading and volume rendering time.</p><p><strong>Conclusions: </strong>This paper highlights advancements in DICOM and MPR visualization using PWAs, addressing the gaps in web-based medical imaging. By exploiting PWA features such as offline access and improved performance, we have significantly advanced medical imaging technology, focusing on cross-platform compatibility, integration efficiency, and speed. Our application outperforms existing platforms for handling complex MPR analyses and accurate analysis of medical imaging as validated through peripheral artery CT imaging.
背景:在医学成像中,三维可视化对于显示体积器官,增强诊断和分析至关重要。多平面重建(MPR)通过将计算机断层扫描(CT)和磁共振成像的2D图像转换为3D表示来提高视觉和诊断能力。基于web的医学数字成像和通信(DICOM)查看器集成到图片存档和通信系统中,方便了对图片的访问和与远程数据的交互。然而,渐进式web应用程序(pwa)对基于web的DICOM和MPR可视化的采用仍然有限。本文通过利用pwa的离线访问和增强的性能来解决这一差距。目的:本研究旨在评估使用pwa将DICOM和MPR可视化集成到web中,解决与医学图像可视化跨平台兼容性、集成能力和高分辨率图像重建相关的挑战。方法:本文介绍了一种采用模块化设计的PWA,用于增强基于web的医学成像中的DICOM和MPR可视化。通过集成React.js和Cornerstone.js,该应用程序提供了无缝的DICOM图像处理,确保了跨浏览器兼容性,并提供了跨多个设备的响应式用户体验。它使用先进的插值技术,使体积重建更准确。这使得MPR分析和可视化在网络环境中更好,从而有望在医学成像分析方面取得实质性进展。结果:在我们的方法中,通过综合实验评估了基于DICOM和mpr的PWAs在医学图像可视化和重建中的性能。该应用程序在加载时间和体积重建方面表现出色,特别是在谷歌Chrome中,而Firefox在查看切片方面表现出色。本研究使用了包含22个外周动脉患者CT扫描的数据集来展示应用程序的强大性能,谷歌Chrome在局域网和广域网设置中都优于其他浏览器。此外,该应用程序在MPR重建中的准确性得到了验证,误差范围为:结论:本文重点介绍了使用pwa的DICOM和MPR可视化的进展,解决了基于网络的医学成像的空白。通过利用PWA特性,如离线访问和改进的性能,我们拥有显著先进的医学成像技术,专注于跨平台兼容性,集成效率和速度。我们的应用程序在处理复杂的MPR分析和通过外周动脉CT成像验证的医学成像准确分析方面优于现有平台。
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引用次数: 0
EyeMatics: An Ophthalmology Use Case Within the German Medical Informatics Initiative. eyeematics:德国医学信息学倡议中的眼科用例。
IF 3.1 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2024-12-05 DOI: 10.2196/60851
Julian Varghese, Alexander Schuster, Broder Poschkamp, Kemal Yildirim, Johannes Oehm, Philipp Berens, Sarah Müller, Julius Gervelmeyer, Lisa Koch, Katja Hoffmann, Martin Sedlmayr, Vinodh Kakkassery, Oliver Kohlbacher, David Merle, Karl Ulrich Bartz-Schmidt, Marius Ueffing, Dana Stahl, Torsten Leddig, Martin Bialke, Christopher Hampf, Wolfgang Hoffmann, Sebastian Berthe, Dagmar Waltemath, Peter Walter, Myriam Lipprandt, Rainer Röhrig, Jens Julian Storp, Julian Alexander Zimmermann, Lea Holtrup, Tobias Brix, Andreas Stahl, Nicole Eter

Unlabelled: The EyeMatics project, embedded as a clinical use case in Germany's Medical Informatics Initiative, is a large digital health initiative in ophthalmology. The objective is to improve the understanding of the treatment effects of intravitreal injections, the most frequent procedure to treat eye diseases. To achieve this, valuable patient data will be meaningfully integrated and visualized from different IT systems and hospital sites. EyeMatics emphasizes a governance framework that actively involves patient representatives, strictly implements interoperability standards, and employs artificial intelligence methods to extract biomarkers from tabular and clinical data as well as raw retinal scans. In this perspective paper, we delineate the strategies for user-centered implementation and health care-based evaluation in a multisite observational technology study.

未标记:EyeMatics项目作为临床用例嵌入德国医学信息学倡议,是眼科领域的大型数字健康倡议。目的是提高对玻璃体内注射治疗效果的认识,玻璃体内注射是治疗眼病最常见的方法。为了实现这一目标,来自不同IT系统和医院站点的有价值的患者数据将被有意义地整合和可视化。EyeMatics强调积极参与患者代表的治理框架,严格执行互操作性标准,并采用人工智能方法从表格和临床数据以及原始视网膜扫描中提取生物标志物。在这篇前瞻性的论文中,我们在一项多地点观察技术研究中描述了以用户为中心的实施和基于医疗保健的评估策略。
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引用次数: 0
Digital Solutions for Health Services and Systems Management: Narrative Review of Certified Software Features in the Brazilian Market. 卫生服务和系统管理的数字解决方案:巴西市场认证软件功能的叙述回顾。
IF 3.1 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2024-11-29 DOI: 10.2196/65281
Ericles Andrei Bellei, Pedro Rafael Domenighi, Carla Maria Dal Sasso Freitas, Ana Carolina Bertoletti De Marchi

Unlabelled: The paper reviews digital solutions for health services management in Brazil, focusing on certified software features. It reveals the integration of various functionalities in operational, financial, and clinical needs simultaneously, which are critical for enhancing operational efficiency and patient care. This study highlights the integration of critical features like interoperability, compliance management, and data-driven decision support, although advancing innovation and integration remains essential for broader impact.

未标记:本文回顾了巴西卫生服务管理的数字解决方案,重点关注认证软件功能。它揭示了在操作、财务和临床需求中同时集成各种功能,这对于提高操作效率和患者护理至关重要。该研究强调了互操作性、合规性管理和数据驱动决策支持等关键特性的集成,尽管推进创新和集成对于更广泛的影响仍然至关重要。
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引用次数: 0
Authors' Reply: The University Medicine Greifswald's Trusted Third Party Dispatcher: State-of-the-Art Perspective Into Comprehensive Architectures and Complex Research Workflows. 作者回复:大学医学Greifswald的可信第三方调度员:综合架构和复杂研究工作流程的最新视角。
IF 3.1 3区 医学 Q2 MEDICAL INFORMATICS Pub Date : 2024-11-29 DOI: 10.2196/67429
Eric Wündisch, Peter Hufnagl, Peter Brunecker, Sophie Meier Zu Ummeln, Sarah Träger, Fabian Prasser, Joachim Weber
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引用次数: 0
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