首页 > 最新文献

Analyst最新文献

英文 中文
Nanozyme linked multi-array gas driven sensor for real-time quantitative detection of Group A streptococcus† 用于实时定量检测 A 群链球菌的纳米酶联接多阵列气体驱动传感器
IF 3.6 3区 化学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2024-10-08 DOI: 10.1039/D4AN00787E
Qi Wang, Pei Liu, Ke Xiao, Wenying Zhou, Jinfeng Li and Yun Xi

Group A streptococcus (GAS) is a pathogen typically transmitted through respiratory droplets and skin contact, causing an estimated 700 million mild non-invasive infections worldwide each year. There are approximately 650 000 infections that progress to severe invasive infections, even resulting in death. Therefore, the ability to detect GAS rapidly, accurately and in real time is important. Herein, we developed a nanozyme linked multi-array gas driven sensor (NLMAGS) to point-of-care testing of GAS within 2 h. The NLMAGS demonstrated excellent performance as it combined the advantages of nanozyme techniques, immunoassay techniques, and 3D printing techniques. Platinum- and palladium-rich nanozyme particles (Au@Pt@PdNPs) were synthesized and used to label monocloning antibodies as detection probes. Magnetic beads were labeled with monocloning antibodies as capture probes to establish a double-antibody sandwich immunoassay for the detection of GAS. The sandwich immune complex can catalyze the H2O2 substrate and produce O2. GAS quantification can be achieved by measuring the distance that the O2 pushes the ink drops forward in the sensor. Under optimized conditions, the NLMAGS quantitatively detected 24 spiked samples with a limit of detection (LOD) of 62 CFU mL−1, which was 5 times lower than that of ELISA (334 CFU mL−1). A strong correlation with the conventional ELISA was found (r = 0.99, P < 0.001). In comparison, the traditional lateral flow immunoassay based on Au@Pt@PdNPs-mAb2 (Au@Pt@PdNPs-LFIA) had a LOD of 104 CFU mL−1, which was significantly higher than that of NLMAGS. The NLMAGS demonstrated excellent sensitivity to GAS. The intra- and inter-assay precisions of the sensor were below 15%. Overall, the established NLMAGS has promising potential as a rapid and quantitative method for detecting GAS and can also be used to detect various pathogens.

A 组链球菌(GAS)是一种病原体,通常通过呼吸道飞沫和皮肤接触传播,估计每年在全球造成 7 亿例轻度非侵入性感染。约有 65 万例感染发展为严重的侵入性感染,甚至导致死亡。因此,快速、准确和实时检测 GAS 的能力非常重要。在此,我们开发了一种纳米酶链接多阵列气体驱动传感器(NLMAGS),可在 2 小时内对 GAS 进行床旁检测。NLMAGS 结合了纳米酶技术、免疫测定技术和 3D 打印技术的优势,表现出卓越的性能。合成了富含铂和钯的纳米酶颗粒(Au@Pt@PdNPs),用于标记单克隆抗体作为检测探针。用单克隆抗体标记磁珠作为捕获探针,建立了一种检测 GAS 的双抗体夹心免疫分析法。夹心免疫复合物可催化 H2O2 底物并产生 O2。通过测量 O2 在传感器中推动墨滴前进的距离,可以实现 GAS 定量。在优化条件下,NLMAGS 可定量检测 24 种添加样品,检测限(LOD)为 62 CFU mL-1,比 ELISA(334 CFU mL-1)低 5 倍。该方法与传统的酶联免疫吸附法有很强的相关性(r = 0.99,P < 0.001)。相比之下,基于 Au@Pt@PdNPs-mAb2 的传统侧流免疫测定(Au@Pt@PdNPs-LFIA)的检测限为 104 CFU mL-1,明显高于 NLMAGS。NLMAGS 对 GAS 的灵敏度极高。传感器的测定内和测定间精度均低于 15%。总之,已建立的 NLMAGS 作为一种快速定量检测 GAS 的方法具有广阔的前景,也可用于检测各种病原体。
{"title":"Nanozyme linked multi-array gas driven sensor for real-time quantitative detection of Group A streptococcus†","authors":"Qi Wang, Pei Liu, Ke Xiao, Wenying Zhou, Jinfeng Li and Yun Xi","doi":"10.1039/D4AN00787E","DOIUrl":"10.1039/D4AN00787E","url":null,"abstract":"<p > <em>Group A streptococcus</em> (<em>GAS</em>) is a pathogen typically transmitted through respiratory droplets and skin contact, causing an estimated 700 million mild non-invasive infections worldwide each year. There are approximately 650 000 infections that progress to severe invasive infections, even resulting in death. Therefore, the ability to detect <em>GAS</em> rapidly, accurately and in real time is important. Herein, we developed a nanozyme linked multi-array gas driven sensor (NLMAGS) to point-of-care testing of <em>GAS</em> within 2 h. The NLMAGS demonstrated excellent performance as it combined the advantages of nanozyme techniques, immunoassay techniques, and 3D printing techniques. Platinum- and palladium-rich nanozyme particles (Au@Pt@PdNPs) were synthesized and used to label monocloning antibodies as detection probes. Magnetic beads were labeled with monocloning antibodies as capture probes to establish a double-antibody sandwich immunoassay for the detection of <em>GAS</em>. The sandwich immune complex can catalyze the H<small><sub>2</sub></small>O<small><sub>2</sub></small> substrate and produce O<small><sub>2</sub></small>. <em>GAS</em> quantification can be achieved by measuring the distance that the O<small><sub>2</sub></small> pushes the ink drops forward in the sensor. Under optimized conditions, the NLMAGS quantitatively detected 24 spiked samples with a limit of detection (LOD) of 62 CFU mL<small><sup>−1</sup></small>, which was 5 times lower than that of ELISA (334 CFU mL<small><sup>−1</sup></small>). A strong correlation with the conventional ELISA was found (<em>r</em> = 0.99, <em>P</em> &lt; 0.001). In comparison, the traditional lateral flow immunoassay based on Au@Pt@PdNPs-mAb2 (Au@Pt@PdNPs-LFIA) had a LOD of 10<small><sup>4</sup></small> CFU mL<small><sup>−1</sup></small>, which was significantly higher than that of NLMAGS. The NLMAGS demonstrated excellent sensitivity to <em>GAS</em>. The intra- and inter-assay precisions of the sensor were below 15%. Overall, the established NLMAGS has promising potential as a rapid and quantitative method for detecting <em>GAS</em> and can also be used to detect various pathogens.</p>","PeriodicalId":63,"journal":{"name":"Analyst","volume":" 22","pages":" 5433-5442"},"PeriodicalIF":3.6,"publicationDate":"2024-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142385075","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Material-agnostic characterization of spatially offset Raman spectroscopy in turbid media via Monte Carlo simulations† 通过蒙特卡洛模拟确定浊介质中空间偏移拉曼光谱的材料诊断特性
IF 3.6 3区 化学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2024-10-08 DOI: 10.1039/D4AN01044B
Zuriel Erikson Joven, Piyush Raj and Ishan Barman

Spatially offset Raman spectroscopy (SORS) is a transformative method for probing subsurface chemical compositions in turbid media. This systematic study of Monte Carlo simulations provides closed-form characterizations of key SORS parameters, such as the distribution of spatial origins of collected Raman photons and optimal SORS geometry to selectively interrogate a subsurface region of interest. These results are unified across an extensive range of material properties by multiplying spatial dimensions by the medium's effective attenuation coefficient, which can be calculated when the absorption and reduced scattering coefficients are known from the literature or experimentation. This method of spatial nondimensionalization is validated via goodness-of-fit analysis on the aggregate models and by training a subsurface sample localization model on a heterogeneous population of materials. The findings reported here advance the understanding of SORS phenomena while providing a quantitative and widely applicable foundation for designing and interpreting SORS experiments, facilitating its application in disciplines such as biomedical, materials science, and cultural heritage fields.

空间偏移拉曼光谱(SORS)是探测浑浊介质中地下化学成分的一种变革性方法。这项蒙特卡洛模拟系统研究提供了 SORS 关键参数的闭式表征,如收集到的拉曼光子的空间来源分布和 SORS 的最佳几何形状,以选择性地询问感兴趣的地下区域。通过将空间尺寸乘以介质的有效衰减系数,可在广泛的材料属性范围内统一这些结果。通过对集合模型的拟合优度分析,以及在异质材料群上训练地下样本定位模型,验证了这种空间非尺寸化方法。本文所报告的研究结果推进了对 SORS 现象的理解,同时为设计和解释 SORS 实验提供了一个定量和广泛适用的基础,促进了其在生物医学、材料科学和文化遗产等领域的应用。
{"title":"Material-agnostic characterization of spatially offset Raman spectroscopy in turbid media via Monte Carlo simulations†","authors":"Zuriel Erikson Joven, Piyush Raj and Ishan Barman","doi":"10.1039/D4AN01044B","DOIUrl":"10.1039/D4AN01044B","url":null,"abstract":"<p >Spatially offset Raman spectroscopy (SORS) is a transformative method for probing subsurface chemical compositions in turbid media. This systematic study of Monte Carlo simulations provides closed-form characterizations of key SORS parameters, such as the distribution of spatial origins of collected Raman photons and optimal SORS geometry to selectively interrogate a subsurface region of interest. These results are unified across an extensive range of material properties by multiplying spatial dimensions by the medium's effective attenuation coefficient, which can be calculated when the absorption and reduced scattering coefficients are known from the literature or experimentation. This method of spatial nondimensionalization is validated <em>via</em> goodness-of-fit analysis on the aggregate models and by training a subsurface sample localization model on a heterogeneous population of materials. The findings reported here advance the understanding of SORS phenomena while providing a quantitative and widely applicable foundation for designing and interpreting SORS experiments, facilitating its application in disciplines such as biomedical, materials science, and cultural heritage fields.</p>","PeriodicalId":63,"journal":{"name":"Analyst","volume":" 22","pages":" 5463-5475"},"PeriodicalIF":3.6,"publicationDate":"2024-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142384140","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Integration of paper-based analytical devices with digital microfluidics for colorimetric detection of creatinine 将纸质分析装置与数字微流控技术相结合,用于肌酐的比色检测
IF 4.2 3区 化学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2024-10-08 DOI: 10.1039/d4an00688g
Larissa Garcia Velasco, Danielly Santos Rocha, Richard P. S. de Campos, Wendell Karlos Tomazelli Coltro
Digital microfluidics (DMF) is a platform that enables the automated manipulation of individual droplets of sizes ranging from nano- to microliter and can be coupled with numerous techniques, including colorimetry. However, although DMF electrode architecture is highly versatile, its integration with different analytical methods often requires either changes in sample access, top plate design, or the integration of supplementary equipment into the system. As an alternative to overcome these challenges, this study proposes a simple integration between paper-based analytical devices (PADs) and DMF for automated and eco-friendly sample processing aiming at the colorimetric detection of creatinine (an important biomarker for kidney disease) in artificial urine. Optimized and selective Jaffé reaction was performed on the device, and reaction products were delivered to the PAD, which was subsequently analyzed with a bench scanner. The optimal operational parameters on DMF were 45 s reaction time with circular mixing and capture of the image after 5 min. Under optimized conditions, a linear behavior was obtained for creatinine concentrations ranging from 2 to 32 mg dL-1, with limits of detection and quantitation equal to 1.4 mg dL-1 and 3.1 mg dL-1, respectively. For the concentration range tested, the relative standard deviation varied from 2.5 to 11.0%, considering four measurements per concentration. Creatinine-spiked synthetic urine samples were subjected to analysis via DMF-PAD and the spectrophotometric reference method. The concentrations of CR determined using both analytical techniques were close to the theoretical values, with the resultant standard deviations of 2-9% and 1-4% for DMF-PAD and spectrophotometry, respectively. Furthermore, the recovery values were within the acceptable range, with DMF-PAD yielding 96-108% and spectrophotometry producing 95-102%. Finally, the greenness levels of DMF-PAD and spectrophotometric methods were evaluated using the Analytical Greenness Metric software, in which 0.71 and 0.51 scores were obtained, respectively. This indicates that the proposed method presents a higher greenness level, mainly due to its miniaturized characteristic using a smaller volume of reagent and sample and the possibility of automation, thus reducing user exposure to potentially toxic substances. Therefore, the DMF-PADs demonstrated great potential for application in the clinical analysis of creatinine, aiding in routine tests by introducing an automated, simple, and environmentally friendly process.
数字微流控(DMF)是一种能够自动操作大小从纳米到微升不等的单个液滴的平台,可与包括比色法在内的多种技术相结合。然而,尽管 DMF 电极结构具有很强的通用性,但要将其与不同的分析方法集成,往往需要改变样品存取方式、顶板设计或将辅助设备集成到系统中。为了克服这些挑战,本研究提出了一种纸质分析设备(PAD)与 DMF 之间的简单集成,用于自动化和环保型样品处理,目的是对人工尿液中的肌酐(肾脏疾病的重要生物标志物)进行比色检测。在该装置上进行了优化的选择性贾菲反应,反应产物被输送到 PAD,随后用台式扫描仪进行分析。DMF 的最佳操作参数为 45 秒反应时间,循环混合,5 分钟后捕捉图像。在优化条件下,肌酐浓度从 2 毫克 dL-1 到 32 毫克 dL-1 之间呈线性关系,检出限和定量限分别为 1.4 毫克 dL-1 和 3.1 毫克 dL-1。在测试的浓度范围内,考虑到对每个浓度进行四次测量,相对标准偏差在 2.5% 到 11.0% 之间。添加了肌酸酐的合成尿样通过 DMF-PAD 和分光光度参照法进行分析。使用这两种分析技术测定的 CR 浓度均接近理论值,DMF-PAD 和分光光度法的标准偏差分别为 2-9% 和 1-4%。此外,回收率也在可接受的范围内,DMF-PAD 的回收率为 96-108%,分光光度法的回收率为 95-102%。最后,使用分析绿色度量软件对 DMF-PAD 和分光光度法的绿色度进行了评估,结果分别为 0.71 和 0.51。这表明拟议方法的绿色程度较高,主要原因是该方法具有微型化的特点,使用的试剂和样品量较少,而且可以实现自动化,从而减少使用者接触潜在有毒物质的机会。因此,DMF-PAD 在肌酐的临床分析中显示出巨大的应用潜力,通过引入自动化、简单和环保的流程,有助于常规检测。
{"title":"Integration of paper-based analytical devices with digital microfluidics for colorimetric detection of creatinine","authors":"Larissa Garcia Velasco, Danielly Santos Rocha, Richard P. S. de Campos, Wendell Karlos Tomazelli Coltro","doi":"10.1039/d4an00688g","DOIUrl":"https://doi.org/10.1039/d4an00688g","url":null,"abstract":"Digital microfluidics (DMF) is a platform that enables the automated manipulation of individual droplets of sizes ranging from nano- to microliter and can be coupled with numerous techniques, including colorimetry. However, although DMF electrode architecture is highly versatile, its integration with different analytical methods often requires either changes in sample access, top plate design, or the integration of supplementary equipment into the system. As an alternative to overcome these challenges, this study proposes a simple integration between paper-based analytical devices (PADs) and DMF for automated and eco-friendly sample processing aiming at the colorimetric detection of creatinine (an important biomarker for kidney disease) in artificial urine. Optimized and selective Jaffé reaction was performed on the device, and reaction products were delivered to the PAD, which was subsequently analyzed with a bench scanner. The optimal operational parameters on DMF were 45 s reaction time with circular mixing and capture of the image after 5 min. Under optimized conditions, a linear behavior was obtained for creatinine concentrations ranging from 2 to 32 mg dL-1, with limits of detection and quantitation equal to 1.4 mg dL-1 and 3.1 mg dL-1, respectively. For the concentration range tested, the relative standard deviation varied from 2.5 to 11.0%, considering four measurements per concentration. Creatinine-spiked synthetic urine samples were subjected to analysis via DMF-PAD and the spectrophotometric reference method. The concentrations of CR determined using both analytical techniques were close to the theoretical values, with the resultant standard deviations of 2-9% and 1-4% for DMF-PAD and spectrophotometry, respectively. Furthermore, the recovery values were within the acceptable range, with DMF-PAD yielding 96-108% and spectrophotometry producing 95-102%. Finally, the greenness levels of DMF-PAD and spectrophotometric methods were evaluated using the Analytical Greenness Metric software, in which 0.71 and 0.51 scores were obtained, respectively. This indicates that the proposed method presents a higher greenness level, mainly due to its miniaturized characteristic using a smaller volume of reagent and sample and the possibility of automation, thus reducing user exposure to potentially toxic substances. Therefore, the DMF-PADs demonstrated great potential for application in the clinical analysis of creatinine, aiding in routine tests by introducing an automated, simple, and environmentally friendly process.","PeriodicalId":63,"journal":{"name":"Analyst","volume":"225 1","pages":""},"PeriodicalIF":4.2,"publicationDate":"2024-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142384141","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Double-channel sensors for high precision measurement of methane based on a dual-path Herriott cell 基于双通道赫略特池的高精度甲烷测量双通道传感器
IF 3.6 3区 化学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2024-10-07 DOI: 10.1039/D4AN01107D
Hongliang Ma, Shiqi Wang, Gaoxuan Wang, Qilei Zhang, Shenlong Zha, Xueyuan Cai, Lingli Li, Pan Pan, Qiang Liu and Shengbao Zhan

A double-channel methane (CH4) sensor was developed using a dual-pass multipass cell (DP-MPC) and a novel method that combines averaging dual-channel concentration signals with optimized detector gain configuration. This DP-MPC features two input/output coupling holes, resulting in absorption path lengths of approximately 95.8 m and 35.8 m, respectively. By optimizing the photodetector gain configuration and averaging the dual-channel concentration signals, the detection performance of the sensor was further enhanced. Allan deviation analysis indicated that after optimizing the detector gain, the measurement precision after dual-channel averaging reaches 21 ppb with an integration time of 1 s at a concentration of 2 ppm CH4, which is approximately 1.4 times higher than the measurement precision of the long-path channel (31 ppb) and short-path channel (30 ppb). The time required to achieve a measurement precision of 21 ppb is 2.4 s for the long-path channel and 2.1 s for the short-path channel. The response speed of the dual-channel averaging is approximately 2 times that of any single channel. Meanwhile, the sensor demonstrated its stability and reliability through continuous outdoor atmospheric CH4 measurements.

利用双通道多通电池(DP-MPC)和一种将平均双通道浓度信号与优化的探测器增益配置相结合的新方法,开发了一种双通道甲烷(CH4)传感器。这种 DP-MPC 具有两个输入/输出耦合孔,吸收路径长度分别约为 95.8 米和 35.8 米。通过优化光电探测器增益配置和平均双通道浓度信号,传感器的检测性能得到了进一步提高。艾伦偏差分析表明,在双通道平均和检测器增益优化后,当 CH4 浓度为 2 ppm 时,传感器在 1 秒积分时间内的测量精度提高到约 20 ppb。同时,在 10 秒积分时间内,测量精度提高了 2-3 倍。通过对室外大气中 CH4 的连续测量,该传感器证明了其稳定性和可靠性。
{"title":"Double-channel sensors for high precision measurement of methane based on a dual-path Herriott cell","authors":"Hongliang Ma, Shiqi Wang, Gaoxuan Wang, Qilei Zhang, Shenlong Zha, Xueyuan Cai, Lingli Li, Pan Pan, Qiang Liu and Shengbao Zhan","doi":"10.1039/D4AN01107D","DOIUrl":"10.1039/D4AN01107D","url":null,"abstract":"<p >A double-channel methane (CH<small><sub>4</sub></small>) sensor was developed using a dual-pass multipass cell (DP-MPC) and a novel method that combines averaging dual-channel concentration signals with optimized detector gain configuration. This DP-MPC features two input/output coupling holes, resulting in absorption path lengths of approximately 95.8 m and 35.8 m, respectively. By optimizing the photodetector gain configuration and averaging the dual-channel concentration signals, the detection performance of the sensor was further enhanced. Allan deviation analysis indicated that after optimizing the detector gain, the measurement precision after dual-channel averaging reaches 21 ppb with an integration time of 1 s at a concentration of 2 ppm CH<small><sub>4</sub></small>, which is approximately 1.4 times higher than the measurement precision of the long-path channel (31 ppb) and short-path channel (30 ppb). The time required to achieve a measurement precision of 21 ppb is 2.4 s for the long-path channel and 2.1 s for the short-path channel. The response speed of the dual-channel averaging is approximately 2 times that of any single channel. Meanwhile, the sensor demonstrated its stability and reliability through continuous outdoor atmospheric CH<small><sub>4</sub></small> measurements.</p>","PeriodicalId":63,"journal":{"name":"Analyst","volume":" 22","pages":" 5527-5534"},"PeriodicalIF":3.6,"publicationDate":"2024-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142383914","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effects of media composition and light exposure on the electrochemical current response during scanning electrochemical microscopy live cell imaging† 介质成分和光照对扫描电化学显微镜活细胞成像过程中电化学电流响应的影响
IF 3.6 3区 化学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2024-10-07 DOI: 10.1039/D4AN01075B
Nikita Thomas, Mengzhen Lyu, Jadon Khouv, Dhésmon Lima and Sabine Kuss

Scanning Electrochemical Microscopy (SECM) has been used as a non-invasive electrochemical technique for studying cellular processes. SECM enables the quantification of cellular metabolites in real-time providing a deeper understanding of cellular responses to external stimuli. SECM imaging of living cells requires maintaining an ideal physiological environment to ensure reliable data collection on cellular reactivity. The cellular response can be directly influenced by physicochemical parameters including cell media composition, temperature and light exposure. This research demonstrates the effect of media composition on the electrochemical current signal of adenocarcinoma cervical cancer (HeLa) cells during SECM measurements using ferrocenemethanol as a redox mediator. Investigated media that are commonly used as electrolyte, are phosphate buffered saline (PBS), and Dulbecco's modified Eagle's medium (DMEM) in the absence and presence of fetal bovine serum (FBS). In addition, this research demonstrates that fluctuating light illumination impacts the stability of the cellular electrochemical current response. Our findings reveal that media composition and illumination are important parameters that must be carefully considered and monitored during SECM live cell imaging.

扫描电化学显微镜 (SECM) 已被用作研究细胞过程的非侵入性电化学技术。SECM 能够实时量化细胞代谢物,从而更深入地了解细胞对外部刺激的反应。活细胞 SECM 成像需要保持理想的生理环境,以确保可靠地收集细胞反应数据。细胞反应可直接受到理化参数的影响,包括细胞培养基成分、温度和光照。本研究利用二茂铁甲醇作为氧化还原介质,展示了在 SECM 测量过程中介质成分对腺癌宫颈癌细胞电化学电流信号的影响。所研究的介质通常用作电解质,包括磷酸盐缓冲盐水和杜氏改良老鹰培养基(无胎牛血清和有胎牛血清)。此外,这项研究还证明,光照波动会影响细胞电化学电流反应的稳定性。我们的研究结果表明,培养基成分和光照是 SECM 活细胞成像过程中必须仔细考虑和监控的重要参数。
{"title":"Effects of media composition and light exposure on the electrochemical current response during scanning electrochemical microscopy live cell imaging†","authors":"Nikita Thomas, Mengzhen Lyu, Jadon Khouv, Dhésmon Lima and Sabine Kuss","doi":"10.1039/D4AN01075B","DOIUrl":"10.1039/D4AN01075B","url":null,"abstract":"<p >Scanning Electrochemical Microscopy (SECM) has been used as a non-invasive electrochemical technique for studying cellular processes. SECM enables the quantification of cellular metabolites in real-time providing a deeper understanding of cellular responses to external stimuli. SECM imaging of living cells requires maintaining an ideal physiological environment to ensure reliable data collection on cellular reactivity. The cellular response can be directly influenced by physicochemical parameters including cell media composition, temperature and light exposure. This research demonstrates the effect of media composition on the electrochemical current signal of adenocarcinoma cervical cancer (HeLa) cells during SECM measurements using ferrocenemethanol as a redox mediator. Investigated media that are commonly used as electrolyte, are phosphate buffered saline (PBS), and Dulbecco's modified Eagle's medium (DMEM) in the absence and presence of fetal bovine serum (FBS). In addition, this research demonstrates that fluctuating light illumination impacts the stability of the cellular electrochemical current response. Our findings reveal that media composition and illumination are important parameters that must be carefully considered and monitored during SECM live cell imaging.</p>","PeriodicalId":63,"journal":{"name":"Analyst","volume":" 22","pages":" 5555-5562"},"PeriodicalIF":3.6,"publicationDate":"2024-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142383965","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Microfluidic methods for the diagnosis of acute respiratory tract infections 诊断急性呼吸道感染的微流控方法
IF 4.2 3区 化学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2024-10-07 DOI: 10.1039/d4an00957f
Kan-Zhi Liu, Ganghong Tian, Alex Ko, Matthias Geissler, Lidija Malic, Ben Moon, Liviu Clime, Teodor Veres
Acute respiratory tract infections (ARTIs) are caused by sporadic or pandemic outbreaks of viral or bacterial pathogens, and continue to be a considerable socioeconomic burden for both developing and industrialized countries alike. Diagnostic methods and technologies serving as the cornerstone for disease management, epidemiological tracking, and public health interventions are evolving continuously to keep up with the demand for higher sensitivity, specificity and analytical throughput. Microfluidics is becoming a key technology in these developments as it allows for integrating, miniaturizing and automating bioanalytical assays at an unprecedented scale, reducing sample and reagent consumption and improving diagnostic performance in terms of sensitivity, throughput and response time. In this article, we describe relevant ARTIs—pneumonia, influenza, severe acute respiratory syndrome, and coronavirus disease 2019—along with their pathogenesis. We provide a summary of established methods for disease diagnosis, involving nucleic acid amplification techniques, antigen detection, serological testing as well as microbial culture. This is followed by a short introduction to microfluidics and how flow is governed at low volume and reduced scale using centrifugation, pneumatic pumping, electrowetting, capillary action, and propagation in porous media through wicking for each of these principles impacts the design, functioning and performance of diagnostic tools in a particular way. We briefly cover commercial instruments that employ microfluidics for use in both laboratory and point-of-care settings. The main part of the article is dedicated to emerging methods deriving from the use of miniaturized, microfluidic systems for ARTI diagnosis. Finally, we share our thoughts on future perspectives and the challenges associated with validation, approval, and adaptation of microfluidic-based systems.
急性呼吸道感染(ARTIs)是由病毒或细菌病原体的零星或大流行爆发引起的,对发展中国家和工业化国家都是一个相当大的社会经济负担。作为疾病管理、流行病学跟踪和公共卫生干预的基石,诊断方法和技术正在不断发展,以满足对更高灵敏度、特异性和分析通量的需求。微流控技术正成为这些发展中的一项关键技术,因为它能以前所未有的规模实现生物分析测试的集成化、微型化和自动化,减少样品和试剂消耗,并在灵敏度、通量和响应时间方面提高诊断性能。在本文中,我们将介绍相关的急性呼吸道感染病--肺炎、流感、严重急性呼吸系统综合征和 2019 年冠状病毒病--及其发病机制。我们概述了疾病诊断的既定方法,包括核酸扩增技术、抗原检测、血清学检测以及微生物培养。随后,我们将简要介绍微流控技术,以及如何利用离心、气动泵、电润湿、毛细管作用和多孔介质中的吸附传播来控制小体积和小规模的流动,因为这些原理都会以特定的方式影响诊断工具的设计、功能和性能。我们简要介绍了在实验室和护理点环境中使用微流控技术的商用仪器。文章的主要部分专门介绍了利用微型微流控系统进行 ARTI 诊断的新兴方法。最后,我们分享了对未来前景的看法,以及与基于微流控系统的验证、批准和适应性相关的挑战。
{"title":"Microfluidic methods for the diagnosis of acute respiratory tract infections","authors":"Kan-Zhi Liu, Ganghong Tian, Alex Ko, Matthias Geissler, Lidija Malic, Ben Moon, Liviu Clime, Teodor Veres","doi":"10.1039/d4an00957f","DOIUrl":"https://doi.org/10.1039/d4an00957f","url":null,"abstract":"Acute respiratory tract infections (ARTIs) are caused by sporadic or pandemic outbreaks of viral or bacterial pathogens, and continue to be a considerable socioeconomic burden for both developing and industrialized countries alike. Diagnostic methods and technologies serving as the cornerstone for disease management, epidemiological tracking, and public health interventions are evolving continuously to keep up with the demand for higher sensitivity, specificity and analytical throughput. Microfluidics is becoming a key technology in these developments as it allows for integrating, miniaturizing and automating bioanalytical assays at an unprecedented scale, reducing sample and reagent consumption and improving diagnostic performance in terms of sensitivity, throughput and response time. In this article, we describe relevant ARTIs—pneumonia, influenza, severe acute respiratory syndrome, and coronavirus disease 2019—along with their pathogenesis. We provide a summary of established methods for disease diagnosis, involving nucleic acid amplification techniques, antigen detection, serological testing as well as microbial culture. This is followed by a short introduction to microfluidics and how flow is governed at low volume and reduced scale using centrifugation, pneumatic pumping, electrowetting, capillary action, and propagation in porous media through wicking for each of these principles impacts the design, functioning and performance of diagnostic tools in a particular way. We briefly cover commercial instruments that employ microfluidics for use in both laboratory and point-of-care settings. The main part of the article is dedicated to emerging methods deriving from the use of miniaturized, microfluidic systems for ARTI diagnosis. Finally, we share our thoughts on future perspectives and the challenges associated with validation, approval, and adaptation of microfluidic-based systems.","PeriodicalId":63,"journal":{"name":"Analyst","volume":"37 1","pages":""},"PeriodicalIF":4.2,"publicationDate":"2024-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142383915","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mass spectrometry reflects key aspects of copper-amyloid β chemistry. 质谱法反映了铜淀粉样蛋白 β 化学的关键方面。
IF 3.6 3区 化学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2024-10-07 DOI: 10.1039/d4an00693c
Sarah Brandner, Tanja Habeck, Frederik Lermyte

Mass spectrometry is a powerful method to study protein complexes; however, biochemical reactions are typically beyond the scope of MS studies. Here, we have studied the gas-phase redox chemistry of the [copper(II) - amyloid β] complex and show that the sequence-dependence of this chemistry reflects key aspects of the known in vitro behaviour of different variants of the peptide.

质谱法是一种研究蛋白质复合物的强大方法;然而,生化反应通常超出了质谱法的研究范围。在这里,我们研究了[铜(II) - 淀粉样蛋白 β]复合物的气相氧化还原化学反应,结果表明,这种化学反应的序列依赖性反映了肽的不同变体的已知体外行为的关键方面。
{"title":"Mass spectrometry reflects key aspects of copper-amyloid β chemistry.","authors":"Sarah Brandner, Tanja Habeck, Frederik Lermyte","doi":"10.1039/d4an00693c","DOIUrl":"https://doi.org/10.1039/d4an00693c","url":null,"abstract":"<p><p>Mass spectrometry is a powerful method to study protein complexes; however, biochemical reactions are typically beyond the scope of MS studies. Here, we have studied the gas-phase redox chemistry of the [copper(II) - amyloid β] complex and show that the sequence-dependence of this chemistry reflects key aspects of the known <i>in vitro</i> behaviour of different variants of the peptide.</p>","PeriodicalId":63,"journal":{"name":"Analyst","volume":" ","pages":""},"PeriodicalIF":3.6,"publicationDate":"2024-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142379510","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A nano-biosensing platform based on CuS-BSA for label-free fluorescence detection of Escherichia coli† 基于 CuS-BSA 的纳米生物传感平台,用于无标记荧光检测大肠杆菌。
IF 3.6 3区 化学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2024-10-07 DOI: 10.1039/D4AN01060D
Xiaoqing Zhang, Shanglin Li and Mei Liu

Bacterial contamination is a serious issue for public health and food safety. In this work, a simple and label-free fluorescence detection nanoplatform for Escherichia coli (E. coli) was established on the basis of the competitive relationship for the reduction of Cu2+ in CuS-BSA between E. coli and O-phenylenediamine (OPD). OPD could be directly oxidized by Cu2+ to produce 2,3-diaminophenazine (ox OPD) with fluorescence properties. When OPD was introduced into an aqueous solution containing CuS-BSA and E. coli, the oxidation of OPD was inhibited owing to the reduction of Cu2+ to Cu+/Cu0 by NADH-2 dehydrogenase in the bacterial copper homeostasis mechanism, thus decreasing the fluorescence response signal of the system. Meanwhile, our strategy exhibited a satisfactory performance with a broad linear response to E. coli ranging from 12 to 1.2 × 107 CFU mL−1, and the limit of detection was 9 CFU mL−1. The practicability of the developed fluorescence biosensing platform in real samples was evaluated by successful determination of E. coli in drinking water and orange juice. These findings provide a new sensing strategy for analyzing other foodborne bacteria and ensuring food safety assessment.

细菌污染是公共卫生和食品安全的一个严重问题。本研究基于大肠杆菌与邻苯二胺(OPD)在 CuS-BSA 中还原 Cu2+ 的竞争关系,建立了一种简单、无标记的大肠杆菌荧光检测纳米平台。OPD 可直接被 Cu2+ 氧化,生成具有荧光特性的 2,3-二氨基吩嗪(ox OPD)。将 OPD 引入含有 CuS-BSA 和大肠杆菌的水溶液中时,由于细菌铜平衡机制中的 NADH-2 脱氢酶将 Cu2+ 还原成 Cu+/Cu0,OPD 的氧化作用受到抑制,从而降低了系统的荧光响应信号。同时,我们的策略表现出令人满意的性能,对大肠杆菌的线性响应范围从 12 到 1.2 × 107 CFU mL-1,检测限为 9 CFU mL-1。通过成功测定饮用水和橙汁中的大肠杆菌,评估了所开发的荧光生物传感平台在实际样品中的实用性。这些发现为分析其他食源性细菌和确保食品安全评估提供了一种新的传感策略。
{"title":"A nano-biosensing platform based on CuS-BSA for label-free fluorescence detection of Escherichia coli†","authors":"Xiaoqing Zhang, Shanglin Li and Mei Liu","doi":"10.1039/D4AN01060D","DOIUrl":"10.1039/D4AN01060D","url":null,"abstract":"<p >Bacterial contamination is a serious issue for public health and food safety. In this work, a simple and label-free fluorescence detection nanoplatform for <em>Escherichia coli</em> (<em>E. coli</em>) was established on the basis of the competitive relationship for the reduction of Cu<small><sup>2+</sup></small> in CuS-BSA between <em>E. coli</em> and <em>O</em>-phenylenediamine (OPD). OPD could be directly oxidized by Cu<small><sup>2+</sup></small> to produce 2,3-diaminophenazine (ox OPD) with fluorescence properties. When OPD was introduced into an aqueous solution containing CuS-BSA and <em>E. coli</em>, the oxidation of OPD was inhibited owing to the reduction of Cu<small><sup>2+</sup></small> to Cu<small><sup>+</sup></small>/Cu<small><sup>0</sup></small> by NADH-2 dehydrogenase in the bacterial copper homeostasis mechanism, thus decreasing the fluorescence response signal of the system. Meanwhile, our strategy exhibited a satisfactory performance with a broad linear response to <em>E. coli</em> ranging from 12 to 1.2 × 10<small><sup>7</sup></small> CFU mL<small><sup>−1</sup></small>, and the limit of detection was 9 CFU mL<small><sup>−1</sup></small>. The practicability of the developed fluorescence biosensing platform in real samples was evaluated by successful determination of <em>E. coli</em> in drinking water and orange juice. These findings provide a new sensing strategy for analyzing other foodborne bacteria and ensuring food safety assessment.</p>","PeriodicalId":63,"journal":{"name":"Analyst","volume":" 22","pages":" 5394-5400"},"PeriodicalIF":3.6,"publicationDate":"2024-10-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142379509","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Screen printed 3D microfluidic paper-based and modifier-free electroanalytical device for clozapine sensing† 用于氯氮平传感的丝网印刷三维微流体纸基免修饰电分析装置
IF 3.6 3区 化学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2024-10-04 DOI: 10.1039/D4AN01136H
Mohammad Hossein Ghanbari, Markus Biesalski, Oliver Friedrich and Bastian J. M. Etzold

The increasing demand in healthcare for accessible and cost-effective analytical tools is driving the development of reliable platforms to the customization of therapy according to individual patient drug serum levels, e.g. of anti-psychotics in schizophrenia. A modifier-free microfluidic paper-based electroanalytical device (μPED) holds promise as a portable, sensitive, and affordable solution. While many studies focus on the working electrode catalysts, improvements by engineering aspects e.g. of the electrode arrangement are less reported. In our study, we demonstrate the enhanced capabilities of the 3D electrode layout of μPED compared to 2D μPED arrangements. We especially show that screen printing can be employed to prepare 3D μPEDs. We conducted a comparison of different 2D and 3D electrode arrangements utilizing cyclic voltammetry in [Fe(CN)6]3−/4−, along with square-wave voltammetry for clozapine (CLZ) sensing. Our findings reveal that the utilization of the 3D μPED leads to an increase in both the electrochemically active surface area and the electron transfer rate. Consequently, this enhancement contributes to improve sensitivity in the CLZ sensing. The 3D μPED clearly outperforms the 2D μPED arrangement in terms of signal strength. With the 3D μPED under the optimized conditions, a linear dose–response for a concentration range from 7.0 to 100 μM was achieved. The limit of detection and sensitivity was determined to be 1.47 μM and 1.69 μA μM−1 cm−2, respectively. This evaluation is conducted in the context of detection and determination of CLZ in a human blood serum sample. These findings underscore the potential of the 3D μPED for future applications in pharmacokinetic analyses and clinical tests to personalize the management of schizophrenia.

医疗保健领域对便捷、经济的分析工具的需求与日俱增,这推动了可靠平台的开发,以便根据患者血清中的药物水平(如精神分裂症患者的抗精神病药物)定制治疗方案。不含改性剂的微流体纸基电分析装置(μPED)有望成为一种便携、灵敏、经济的解决方案。虽然许多研究侧重于工作电极催化剂,但通过电极排列等工程方面进行改进的报道较少。在我们的研究中,我们展示了μPED的三维电极布局与二维μPED布局相比所具有的更强功能。我们特别展示了丝网印刷可用于制备三维μPED。我们利用[Fe(CN)6]3-/4-中的循环伏安法以及用于氯氮平 (CLZ) 检测的方波伏安法对不同的二维和三维电极布局进行了比较。我们的研究结果表明,利用三维 μPED 可以增加电化学活性表面积和电子转移率。因此,这种增强有助于提高 CLZ 传感的灵敏度。就信号强度而言,三维 μPED 显然优于二维 μPED 布局。在优化的条件下,三维 μPED 在 7.0 到 100 μM 的浓度范围内实现了线性剂量反应。检测限和灵敏度分别为 1.47 μM 和 1.69 μA µM-1 cm-2。这项评估是在检测和测定人体血清样本中的 CLZ 时进行的。这些发现凸显了 3D μPED 在未来应用于药代动力学分析和临床测试以个性化治疗精神分裂症方面的潜力。
{"title":"Screen printed 3D microfluidic paper-based and modifier-free electroanalytical device for clozapine sensing†","authors":"Mohammad Hossein Ghanbari, Markus Biesalski, Oliver Friedrich and Bastian J. M. Etzold","doi":"10.1039/D4AN01136H","DOIUrl":"10.1039/D4AN01136H","url":null,"abstract":"<p >The increasing demand in healthcare for accessible and cost-effective analytical tools is driving the development of reliable platforms to the customization of therapy according to individual patient drug serum levels, <em>e.g.</em> of anti-psychotics in schizophrenia. A modifier-free microfluidic paper-based electroanalytical device (μPED) holds promise as a portable, sensitive, and affordable solution. While many studies focus on the working electrode catalysts, improvements by engineering aspects <em>e.g.</em> of the electrode arrangement are less reported. In our study, we demonstrate the enhanced capabilities of the 3D electrode layout of μPED compared to 2D μPED arrangements. We especially show that screen printing can be employed to prepare 3D μPEDs. We conducted a comparison of different 2D and 3D electrode arrangements utilizing cyclic voltammetry in [Fe(CN)<small><sub>6</sub></small>]<small><sup>3−/4−</sup></small>, along with square-wave voltammetry for clozapine (CLZ) sensing. Our findings reveal that the utilization of the 3D μPED leads to an increase in both the electrochemically active surface area and the electron transfer rate. Consequently, this enhancement contributes to improve sensitivity in the CLZ sensing. The 3D μPED clearly outperforms the 2D μPED arrangement in terms of signal strength. With the 3D μPED under the optimized conditions, a linear dose–response for a concentration range from 7.0 to 100 μM was achieved. The limit of detection and sensitivity was determined to be 1.47 μM and 1.69 μA μM<small><sup>−1</sup></small> cm<small><sup>−2</sup></small>, respectively. This evaluation is conducted in the context of detection and determination of CLZ in a human blood serum sample. These findings underscore the potential of the 3D μPED for future applications in pharmacokinetic analyses and clinical tests to personalize the management of schizophrenia.</p>","PeriodicalId":63,"journal":{"name":"Analyst","volume":" 22","pages":" 5411-5422"},"PeriodicalIF":3.6,"publicationDate":"2024-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2024/an/d4an01136h?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142374289","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evaluating protocols for reproducible targeted metabolomics by NMR† 通过核磁共振评估可重复的靶向代谢组学方案
IF 3.6 3区 化学 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2024-10-02 DOI: 10.1039/D4AN01015A
Darcy Cochran, Panteleimon G. Takis, James L. Alexander, Benjamin H. Mullish, Nick Powell, Julian R. Marchesi and Robert Powers

Metabolomics aims to study the downstream effects of variables like diet, environment, or disease on a given biological system. However, inconsistencies in sample preparation, data acquisition/processing protocols lead to reproducibility and accuracy concerns. A systematic study was conducted to assess how sample preparation methods and data analysis platforms affect metabolite susceptibility. A targeted panel of 25 metabolites was evaluated in 69 clinical metabolomics samples prepared following three different protocols: intact, ultrafiltration, and protein precipitation. The resulting metabolic profiles were characterized by 1D 1H nuclear magnetic resonance (NMR) spectroscopy and analyzed with Chenomx v8.3 and SMolESY software packages. Greater than 90% of the metabolites were extracted more efficiently using protein precipitation than filtration, which aligns with previously reported results. Additionally, analysis of data processing software suggests that metabolite concentrations were overestimated by Chenomx batch-fitting, which only appears reliable for determining relative fold changes rather than absolute quantification. However, an assisted-fit method provided sufficient guidance to achieve accurate results while avoiding a time-consuming fully manual-fitting approach. By combining our results with previous studies, we can now provide a list of 5 common metabolites [2-hydroxybutyrate (2-HB), choline, dimethylamine (DMA), glutamate, lactate] with a high degree of variability in reported fold changes and standard deviations that need careful consideration before being annotated as potential biomarkers. Our results show that sample preparation and data processing package critically impact clinical metabolomics study success. There is a clear need for an increased degree of standardization and harmonization of methods across the metabolomics community to ensure reliable outcomes.

代谢组学旨在研究饮食、环境或疾病等变量对特定生物系统的下游影响。然而,样品制备、数据采集/处理方案的不一致导致了可重复性和准确性方面的问题。为了评估样品制备方法和数据分析平台对代谢物易感性的影响,我们开展了一项系统性研究。对 69 份临床代谢组学样本中的 25 种目标代谢物进行了评估,这些样本按照三种不同的方案制备:原样、超滤和蛋白沉淀。通过一维 1H 核磁共振 (NMR) 光谱对所得到的代谢谱进行了表征,并使用 Chenomx v8.3 和 SMolESY 软件包进行了分析。与过滤相比,蛋白质沉淀法提取代谢物的效率要高出 90%,这与之前报道的结果一致。此外,对数据处理软件的分析表明,Chenomx 批次拟合法高估了代谢物的浓度,该方法似乎只能确定相对折叠变化而非绝对定量。不过,辅助拟合方法提供了足够的指导,可以获得准确的结果,同时避免了耗时的全手工拟合方法。通过将我们的结果与之前的研究相结合,我们现在可以提供一份 5 种常见代谢物(2-羟丁酸(2-HB)、胆碱、二甲胺(DMA)、谷氨酸、乳酸盐)的清单,这些代谢物在报告的折叠变化和标准偏差方面存在很大差异,在将其注释为潜在生物标记物之前需要仔细考虑。我们的研究结果表明,样本制备和数据处理包对临床代谢组学研究的成功有着至关重要的影响。代谢组学界显然需要提高方法的标准化和统一化程度,以确保研究结果的可靠性。
{"title":"Evaluating protocols for reproducible targeted metabolomics by NMR†","authors":"Darcy Cochran, Panteleimon G. Takis, James L. Alexander, Benjamin H. Mullish, Nick Powell, Julian R. Marchesi and Robert Powers","doi":"10.1039/D4AN01015A","DOIUrl":"10.1039/D4AN01015A","url":null,"abstract":"<p >Metabolomics aims to study the downstream effects of variables like diet, environment, or disease on a given biological system. However, inconsistencies in sample preparation, data acquisition/processing protocols lead to reproducibility and accuracy concerns. A systematic study was conducted to assess how sample preparation methods and data analysis platforms affect metabolite susceptibility. A targeted panel of 25 metabolites was evaluated in 69 clinical metabolomics samples prepared following three different protocols: intact, ultrafiltration, and protein precipitation. The resulting metabolic profiles were characterized by 1D <small><sup>1</sup></small>H nuclear magnetic resonance (NMR) spectroscopy and analyzed with Chenomx v8.3 and SMolESY software packages. Greater than 90% of the metabolites were extracted more efficiently using protein precipitation than filtration, which aligns with previously reported results. Additionally, analysis of data processing software suggests that metabolite concentrations were overestimated by Chenomx batch-fitting, which only appears reliable for determining relative fold changes rather than absolute quantification. However, an assisted-fit method provided sufficient guidance to achieve accurate results while avoiding a time-consuming fully manual-fitting approach. By combining our results with previous studies, we can now provide a list of 5 common metabolites [2-hydroxybutyrate (2-HB), choline, dimethylamine (DMA), glutamate, lactate] with a high degree of variability in reported fold changes and standard deviations that need careful consideration before being annotated as potential biomarkers. Our results show that sample preparation and data processing package critically impact clinical metabolomics study success. There is a clear need for an increased degree of standardization and harmonization of methods across the metabolomics community to ensure reliable outcomes.</p>","PeriodicalId":63,"journal":{"name":"Analyst","volume":" 22","pages":" 5423-5432"},"PeriodicalIF":3.6,"publicationDate":"2024-10-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142363286","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Analyst
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1