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Optical control of nanobody-mediated protein activity modulation with a photocleavable fluorescent protein. 用光可溶解荧光蛋白对纳米抗体介导的蛋白质活性调节进行光学控制。
IF 3.6 3区 化学 Q1 Chemistry Pub Date : 2024-06-25 DOI: 10.1039/d4an00433g
Mizuki Endo, Saki Tomizawa, Qiaoyue Kuang, Takeaki Ozawa

Antibodies are crucial in various biological applications due to their specific binding to target molecules, altering protein function and structure. The advent of single-chain antibodies such as nanobodies has paved the way for broader applicability in both research and therapies due to their small size and efficient tissue penetration. Recently, several approaches have been reported to optically control the antigen-binding affinity of nanobodies. Here, we show an alternative strategy for creating photo-activatable nanobodies. By fusing the photocleavable protein PhoCl with the N-terminus of the nanobody (named optoNb60), we successfully demonstrated light-dependent restoration of the antigen-binding ability and the following modulation of the activity of a target protein, the beta-2 adrenergic receptor. Moreover, the activation of optoNb60 was monitored by the fluorescence changes upon photoconversion. The compatibility of the uncaging design with the previously reported optogenetic molecules using nanobodies will contribute to the further optimization of the response capabilities of existing optogenetic tools, thereby expanding their applicability.

抗体能与目标分子特异性结合,改变蛋白质的功能和结构,因此在各种生物应用中至关重要。单链抗体(如纳米抗体)因其体积小、组织穿透力强,为更广泛地应用于研究和治疗铺平了道路。最近,有几种方法被报道用于光学控制纳米抗体的抗原结合亲和力。在这里,我们展示了另一种制造光活化纳米抗体的策略。通过将可光裂解蛋白 PhoCl 与纳米抗体(命名为 optoNb60)的 N 端融合,我们成功地证明了光依赖性抗原结合能力的恢复,以及随后对靶蛋白--β-2 肾上腺素能受体--活性的调节。此外,我们还通过光电转换时的荧光变化监测了 optoNb60 的活化情况。开笼设计与之前报道的使用纳米抗体的光遗传分子的兼容性将有助于进一步优化现有光遗传工具的反应能力,从而扩大其适用范围。
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引用次数: 0
Comprehensive Review on Fluorescent Carbon Dots and Their Applications in Nucleic Acid Detection, Nucleolus Targeted Imaging and Gene Delivery 荧光碳点及其在核酸检测、核仁靶向成像和基因传递中的应用综述
IF 4.2 3区 化学 Q1 Chemistry Pub Date : 2024-06-25 DOI: 10.1039/d4an00630e
Selva Sharma Arumugam, Nae Yoon Lee
Carbon dots (CDs), including carbon quantum dots, graphene quantum dots, carbon nanodots, and polymer dots, have gained significant attention due to their unique structural and fluorescence characteristics. This review provides a comprehensive overview of the classification, structural characteristics, and fluorescence properties of CDs, followed by an exploration of various fluorescence sensing mechanisms and their applications in gene detection, nucleolus imaging, and gene delivery. Furthermore, the functionalization of CDs with diverse surface ligand molecules, including dye molecules, nucleic acid probes, and metal derivatives for sensitive nucleic acid detection is systematically examined. Fluorescence imaging of cell nucleolus plays a vital role in examining intracellular processes and dynamics of subcellular structures. By analyzing the mechanism of fluorescence and structure-function relationships inherent in CDs, the nucleolus targeting abilities of CDs in various cell lines have been discussed. Additionally, challenges such as the insufficient organelle specificity of CDs and the inconsistent mechanisms underlying nucleolus targeting have also been highlighted. The unique physical and chemical properties of CDs, particularly their strong affinity toward deoxyribonucleic acid (DNA), have spurred interest in gene delivery applications. The use of nuclear targeting peptides, polymers, and ligands in conjunction with CDs for improved gene delivery applications have been systematically reviewed. Through a comprehensive analysis, the review aims to contribute to a deeper understanding of the potentials and challenges associated with CDs in biomedical applications.
碳点(CD),包括碳量子点、石墨烯量子点、碳纳米点和聚合物点,因其独特的结构和荧光特性而备受关注。这篇综述全面概述了 CD 的分类、结构特征和荧光特性,随后探讨了各种荧光传感机制及其在基因检测、核仁成像和基因递送中的应用。此外,还系统地研究了 CD 与各种表面配体分子(包括染料分子、核酸探针和金属衍生物)的功能化,以实现灵敏的核酸检测。细胞核的荧光成像在研究细胞内过程和亚细胞结构动态方面发挥着重要作用。通过分析 CD 本身的荧光机制和结构功能关系,讨论了 CD 在不同细胞系中的核仁靶向能力。此外,CDs 细胞器特异性不足和核仁靶向机制不一致等挑战也得到了强调。CD具有独特的物理和化学特性,尤其是对脱氧核糖核酸(DNA)具有很强的亲和力,这激发了人们对基因递送应用的兴趣。本文系统地综述了将核靶向肽、聚合物和配体与 CD 结合使用以改进基因递送应用的情况。通过全面分析,该综述旨在帮助人们更深入地了解 CDs 在生物医学应用中的潜力和挑战。
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引用次数: 0
Using surface-enhanced Raman scattering for simultaneous multiplex detection and quantification of thiols associated to axillary malodour 利用表面增强拉曼散射法同时多重检测和量化与腋臭相关的硫醇
IF 4.2 3区 化学 Q1 Chemistry Pub Date : 2024-06-24 DOI: 10.1039/d4an00762j
Amy Colleran, Cássio Lima, Yun Xu, Allen Millichope, Stephanie Murray, Royston Goodacre
Axillary malodour is caused by the microbial conversion of human-derived precursors to volatile organic compounds. Thiols strongly contribute to this odour but are hard to detect due to being present in low quantities. Additionally, thiols are highly volatile and small making sampling and analysis difficult including by gas chromatography-mass spectrometry. This makes their detection and quantification extremely difficult. In this study, surface-enhanced Raman scattering (SERS) combined with chemometrics was utilised to simultaneously quantify four malodourous thiols associated with axillary odour both in individual and multiplex solutions. Univariate and multivariate methods of partial least squares regression (PLS-R) were used to calculate the limit of detection (LoD) and results compared. Both methods yielded comparable LoD values, with LoDs using PLS-R ranging from 0.0227 ppm to 0.0153 ppm for the thiols studied. These thiols were then examined and quantified simultaneously in 120 mixtures using PLS-R. The resultant models showed high linearity (Q2 values between 0.9712 and 0.9827 for both PLS-1 and PLS-2) and low values of root mean squared error of predictions (0.0359 ppm and 0.0459 ppm for PLS-1 and PLS-2, respectively). To test this approach further, these models were challenged with 15 new blind test samples collected independently from the initial samples. This test demonstrated that SERS combined with PLS-R could be used to predict the unknown concentrations of these thiols in a mixture. These results display the ability of SERS for the simultaneous multiplex detection and its potential for future development for detecting gaseous thiols produced from skin or body sites.
腋窝恶臭是由微生物将人体产生的前体物质转化为挥发性有机化合物造成的。硫醇在很大程度上造成了这种气味,但由于含量较低,很难检测到。此外,硫醇极易挥发且体积小,因此很难采样和分析,包括使用气相色谱-质谱法。这使得硫醇的检测和定量极为困难。在这项研究中,利用表面增强拉曼散射(SERS)与化学计量学相结合的方法,同时对单个溶液和多重溶液中与腋臭相关的四种恶臭硫醇进行了量化。使用偏最小二乘回归(PLS-R)的单变量和多变量方法计算检测限(LoD),并对结果进行比较。两种方法得出的 LoD 值相当,使用 PLS-R 方法计算的硫醇 LoD 值为 0.0227 ppm 至 0.0153 ppm。然后使用 PLS-R 对 120 种混合物中的这些硫醇同时进行了检测和定量。所建立的模型显示出较高的线性度(PLS-1 和 PLS-2 的 Q2 值在 0.9712 和 0.9827 之间)和较低的预测均方根误差值(PLS-1 和 PLS-2 分别为 0.0359 ppm 和 0.0459 ppm)。为了进一步测试这种方法,我们用独立于初始样本收集的 15 个新的盲测样本对这些模型进行了挑战。测试结果表明,SERS 与 PLS-R 的结合可以用来预测混合物中这些硫醇的未知浓度。这些结果表明了 SERS 的同步多重检测能力及其在检测皮肤或身体部位产生的气态硫醇方面的未来发展潜力。
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引用次数: 0
Degradation and detection of organophosphorus pesticides based on peptides and MXene-peptide composite materials 基于肽和 MXene-肽复合材料的有机磷农药降解与检测
IF 4.2 3区 化学 Q1 Chemistry Pub Date : 2024-06-19 DOI: 10.1039/d4an00674g
Qiuying Wang, Ruiqing Jiu, Yunyao Wang, Zongda Li, Jianan Chen, Haochi Liu, Jifeng Liu, Jia Cao
Safety problems caused by organophosphorus pesticide (OPs) residues are constantly occurring, so the establishment of new methods for the degradation and detection of OPs is of huge scientific significance. In the present study, β-sheet peptides and β-hairpin peptides catalyzing hydrolysis of OPs were designed and synthesized. The peptide sequences with the highest hydrolytic activity (EHSGGVTVDPPLTVEHSAG) were screened by investigating the effect of the location of the active sites of the peptide and the peptide’s structure on the degradation of OPs. In addition, the relationship between peptides’ conformation and hydrolytic activity was further analyzed based on density functional theory and the noncovalent interaction of the peptides with OPs and the electrostatic potential on the molecular surface and molecular docking properties were also investigated. It was found that the peptides with approximate active amino acids consisting of the catalytic triad and with the hairpin structure had the enhanced hydrolytic activity toward OPs’ hydrolysis. To develop an electrochemical sensor technique to detect OPs, the conductive MXene (Ti3C2) material was first immobilized with caffeic acid monolayer via enediol-metal complex chemistry and then bound with β-hairpin peptide (EHSGGVTVDPPLTVEHSAG) via carboxy-amine condensation chemistry between the -COOH of caffeic acid and the -NH2 of peptide to prepare MXene-peptide composite. And then the prepared composite was modified on the surface of a glassy carbon electrode to construct an electrochemical sensor for the detection of OPs. And the developed technique can be used to monitor OPs within 15 min with a two orders of linear working range and with a detection limit of 0.15 μM. Meanwhile, the sensor showed good reliability for the detection of OPs in real vegetables.
有机磷农药(OPs)残留引发的安全问题时有发生,因此建立降解和检测 OPs 的新方法具有重要的科学意义。本研究设计并合成了催化 OPs 水解的 β-片肽和β-发夹肽。通过研究肽的活性位点位置和肽的结构对 OPs 降解的影响,筛选出了水解活性最高的肽序列(EHSGGVTVDPPLTVEHSAG)。此外,还基于密度泛函理论进一步分析了多肽的构象与水解活性之间的关系,并研究了多肽与 OPs 的非共价相互作用以及分子表面的静电位和分子对接特性。结果发现,由催化三元组组成的近似活性氨基酸和发夹结构的多肽具有更强的水解 OPs 的活性。为了开发一种检测 OPs 的电化学传感器技术,首先通过烯二醇-金属络合物化学反应将导电性 MXene(Ti3C2)材料固定在咖啡酸单层上,然后通过咖啡酸的 -COOH 与肽的 -NH2 之间的羧胺缩合化学反应将其与β-发夹肽(EHSGGVTVDPPLTVEHSAG)结合,制备出 MXene-肽复合材料。然后将制备的复合材料修饰在玻璃碳电极表面,构建了一种用于检测 OPs 的电化学传感器。所开发的技术可用于在 15 分钟内监测 OPs,其线性工作范围为两个数量级,检测限为 0.15 μM。同时,该传感器在实际蔬菜中检测 OPs 的可靠性良好。
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引用次数: 0
Qualifying P-glycoprotein in drug-resistant ovarian cancer cells: a dual-mode aptamer probe approach 鉴定耐药卵巢癌细胞中的 P 糖蛋白:一种双模式适配体探针方法
IF 4.2 3区 化学 Q1 Chemistry Pub Date : 2024-06-19 DOI: 10.1039/d4an00803k
Chaobin Pang, Heng Xu, Jichao Xu, Lei Zhang, Jinhua Wang, Su Jing
Drug resistance presents a significant obstacle in treating human ovarian cancer. The development of effective methods for detecting drug-resistant cancer cells is pivotal for tailoring personalized therapies and prognostic assessments. In this investigation, we introduce a dual-mode detection technique employing a fluorogenic aptamer probe for the qualification of P-glycoprotein (P-gp) in drug-resistant ovarian cancer cells. The probe, initially in an "off" state due to the proximity of a quencher to the fluorophore, exhibits increased fluorescence intensity upon binding with the target. The fluorescence enhancement shows a linear correlation with both the concentration of P-gp and the presence of P-gp in drug-resistant ovarian cancer cells. This correlation is quantifiable, with detection limits of 1.56 nM and 110 cells mL-1. In an alternate mode, the optimized fluorophores, attached to the aptamer, form larger complexes upon binding to the target protein, which diminishes the rotation speed, thereby augmenting fluorescence polarization. The alteration in fluorescence polarization enables the quantitative analysis of P-gp in the cells, ranging from 100 to 1500 cells per milliliter, with a detection limit of 40 cells mL-1. Gene expression analyses, protein expression studies, and immunofluorescence imaging further validated the reliability of our aptamer-based probe for its specificity towards P-gp in drug-resistant cancer cells. Our findings underscore the dual-mode detection approach promises to enhance the diagnosis and treatment of multidrug-resistant ovarian cancer.
耐药性是治疗人类卵巢癌的一大障碍。开发检测耐药癌细胞的有效方法对于定制个性化疗法和预后评估至关重要。在这项研究中,我们介绍了一种双模式检测技术,该技术采用了一种荧光诱导的aptamer探针,用于鉴定耐药卵巢癌细胞中的P-糖蛋白(P-gp)。由于荧光团靠近淬灭剂,探针最初处于 "关闭 "状态,与目标物结合后荧光强度增强。荧光增强与 P-gp 浓度和耐药卵巢癌细胞中 P-gp 的存在呈线性相关。这种相关性可以量化,检测限分别为 1.56 nM 和 110 cells mL-1。在另一种模式中,优化的荧光团附着在适配体上,与目标蛋白结合后会形成较大的复合物,从而降低旋转速度,增强荧光极性。荧光偏振的改变可对细胞中的 P-gp 进行定量分析,分析范围为每毫升 100 到 1500 个细胞,检测限为每毫升 40 个细胞。基因表达分析、蛋白质表达研究和免疫荧光成像进一步验证了我们基于适配体的探针对耐药癌细胞中 P-gp 特异性的可靠性。我们的研究结果表明,双模式检测方法有望提高耐多药卵巢癌的诊断和治疗水平。
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引用次数: 0
Characterizing and understanding the photovoltage in n-Si/Au light-addressable electrochemical sensors. n-Si/Au 可寻址光电化学传感器中光电电压的特征和理解。
IF 4.2 3区 化学 Q1 Chemistry Pub Date : 2024-06-19 DOI: 10.1039/d4an00768a
Armeen Hussain, Kayla Mancini, Yousef Khatib, Glen D O'Neil

Here, we characterize the photovoltage of n-Si/Au light-addressable electrodes (LAEs) over a range of solution potentials from ca. -1 to +1 V. We find that the n-Si/Au photoelectrodes show photovoltages consistent with a semiconductor/liquid junction in contrast to a buried junction, which opposes our previous understanding of how photovoltage originates in these sensors.

我们发现,n-Si/Au 光电极显示的光电压与半导体/液体结一致,而不是埋入结,这与我们以前对这些传感器中光电压如何产生的理解相反。
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引用次数: 0
Evaluating Early Apoptosis-Related Cellular MiRNAs with an Ultrasensitive Electrochemiluminescence Nanoplatform 利用超灵敏电化学发光纳米平台评估与细胞凋亡有关的早期 MiRNA
IF 4.2 3区 化学 Q1 Chemistry Pub Date : 2024-06-18 DOI: 10.1039/d4an00765d
Haiying Cai, Peiting Dong, Xiuping Li, Lulu Wang, Tao Li
It is known that the abnormal expression of specific cellular miRNAs is closely related to cell apoptosis, and so monitoring the level change of these miRNAs is in principle able to evaluate the proceeding of apoptosis stimulated by drugs. Towards this goal, here we construct an ultrasensitive electrochemiluminescence (ECL) nanoplatform via the target miRNA-triggered immobilization of spherical nucleic acid enzymes (SNAzymes) onto tetrahedral DNA nanostructures on the electrode surface, which catalyzes the Luminol-H2O2 reaction to output ECL signal. This enables the sensitive and specific detection of two apoptosis-related miRNAs, miR-21 and miR-133a, with a detection limit of 33 aM. Further, we employed the developed ECL nanoplatform to monitor the levels of these two miRNAs inside cancer cells stimulated by DOX, showing that the level of miR-21 decreases, while that of miR-133a increases in the early apoptotic cells. This difference highlights the distinct roles of two target miRNAs that miR-21 promotes the early apoptosis of cancer cells, whereas miR-133a suppresses it, providing new insight into cell physiological processes.
众所周知,特定细胞 miRNA 的异常表达与细胞凋亡密切相关,因此监测这些 miRNA 的水平变化原则上可以评估药物刺激细胞凋亡的进程。为此,我们构建了一种超灵敏的电化学发光(ECL)纳米平台,通过将目标 miRNA 触发的球形核酸酶(SNAzymes)固定在电极表面的四面体 DNA 纳米结构上,催化 Luminol-H2O2 反应输出 ECL 信号。这样就能灵敏而特异地检测两种与细胞凋亡相关的 miRNA:miR-21 和 miR-133a,检测限为 33 aM。此外,我们还利用所开发的 ECL 纳米平台监测了受 DOX 刺激的癌细胞内这两种 miRNA 的水平,结果显示,在早期凋亡细胞中,miR-21 的水平降低,而 miR-133a 的水平升高。这种差异凸显了两种目标 miRNA 的不同作用:miR-21 促进癌细胞的早期凋亡,而 miR-133a 则抑制癌细胞的早期凋亡。
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引用次数: 0
Diazonium-functionalized Silver Electrode for the Sensitive Amperometric Detection of p-Nitrophenol in Water Over a Wide Range of Concentration 用于在大浓度范围内灵敏检测水中对硝基苯酚的重氮化银电极
IF 4.2 3区 化学 Q1 Chemistry Pub Date : 2024-06-17 DOI: 10.1039/d4an00696h
Christelle VIROLLE, David EVRARD, Olivier REYNES
This work presents a novel approach for the electrochemical detection of p-nitrophenol (pNP) focusing on the development of a simple and efficient strategy to overcome pNP adsorption. The proposed method involves the functionalization of a silver (Ag) electrode by an electrografted, thin diazonium film. After characterization by electrochemical impedance spectroscopy (EIS) and cyclic voltammetry, the as-functionalized electrode allowed a wide linear detection range to be established in aqueous solutions, spanning from 1 to 500 µM pNP. This outcome indicates that the diazonium film effectively addresses any issues related to adsorption with good repeatability and reproducibility. Furthermore, the sensor’s analytical performances were evaluated yielding a sensitivity and a limit of detection of 0.3819 µA cm-2 µM-1 and 600 nM, respectively. The sensor was also found to exhibit a good selectivity towards pNP and phenolic compounds and was successfully tested on a real water sample.
本研究提出了一种电化学检测对硝基苯酚(pNP)的新方法,重点是开发一种简单高效的策略来克服对硝基苯酚的吸附。所提出的方法是通过电铸重氮薄膜对银(Ag)电极进行功能化。通过电化学阻抗谱(EIS)和循环伏安法进行表征后,功能化电极可在水溶液中建立宽线性检测范围,从 1 微摩尔到 500 微摩尔 pNP。这一结果表明,重氮薄膜有效地解决了与吸附有关的任何问题,具有良好的重复性和再现性。此外,还对传感器的分析性能进行了评估,灵敏度和检测限分别为 0.3819 µA cm-2 µM-1 和 600 nM。研究还发现,该传感器对 pNP 和酚类化合物具有良好的选择性,并在实际水样中成功进行了测试。
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引用次数: 0
Gold film deposition by infrared laser photothermal treatment on 3D-printed electrodes: electrochemical performance enhancement and application 通过红外激光光热处理在三维打印电极上沉积金膜:电化学性能提升与应用
IF 4.2 3区 化学 Q1 Chemistry Pub Date : 2024-06-17 DOI: 10.1039/d4an00669k
William Barros Veloso, Gabriel Negrão Meloni, Iana Vitória Spadini Arantes, Lauro Antonio Pradela Filho, Rodrigo Alejandro Abarza Munoz, Thiago R.L.C. Paixão
3D printing has attracted the interest of researchers due to its creative freedom, low cost, and ease of operation. Because of these features, this technology has produced different types of electroanalytical platforms. Despite their popularity, the thermoplastic composites used for electrode fabrication typically have high electrical resistance, resulting in devices with poor electrochemical performance. Herein, we propose a new strategy to improve the electrochemical performance of 3D-printed electrodes and to gain chemical selectivity towards glucose detection. The approach involves synthesising a nanostructured gold film using an infrared laser source directly on the surface of low-contact resistance 3D-printed electrodes. The laser parameters, such as power, focal distance, and beam scan rate, were carefully optimised for the modification steps. Scanning electronic microscopy and energy-dispersive X-ray spectroscopy confirmed the morphology and composition of the nanostructured gold film. After modification, the resulting electrodes could selectively detect glucose, encouraging their use for sensing applications. When compared with a gold disc electrode, the gold-modified 3D-printed electrode provided a 44-fold current increase for glucose oxidation. As proof of concept, the devices were utilised for the non-enzymatic catalytic determination of glucose in drink samples, demonstrating the gold film's catalytic nature and confirming the analytical applicability with more precise results than commercial glucometers.
3D 打印技术以其自由创意、低成本和易于操作等特点吸引了研究人员的兴趣。由于这些特点,该技术已生产出不同类型的电分析平台。尽管很受欢迎,但用于电极制造的热塑性复合材料通常具有较高的电阻,导致设备的电化学性能较差。在此,我们提出了一种新策略来改善 3D 打印电极的电化学性能,并获得葡萄糖检测的化学选择性。该方法是利用红外激光源直接在低接触电阻 3D 打印电极表面合成纳米结构金膜。激光参数(如功率、焦距和光束扫描速率)在改性步骤中经过了仔细优化。扫描电子显微镜和能量色散 X 射线光谱证实了纳米结构金膜的形态和成分。改性后的电极可以选择性地检测葡萄糖,从而促进了其在传感领域的应用。与金圆盘电极相比,金修饰的 3D 打印电极在葡萄糖氧化过程中的电流增加了 44 倍。作为概念验证,这些装置被用于饮料样品中葡萄糖的非酶催化测定,证明了金膜的催化性质,并证实了其分析适用性,其结果比商用血糖仪更精确。
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引用次数: 0
Digital surface enhanced Raman spectroscopy for quantifiable single molecule detection in flow 数字表面增强拉曼光谱用于流动中的单分子定量检测
IF 4.2 3区 化学 Q1 Chemistry Pub Date : 2024-06-13 DOI: 10.1039/d4an00801d
Hannah C Schorr, Zachary D Schultz
Surface enhanced Raman scattering (SERS) provides a label free method of analyzing molecules from diverse and complex signals, potentially with single molecule sensitivity. The chemical specificity inherent in the SERS spectrum can identify molecules; however signal variabilty arising the from diversity of plasmonic environments can limit quantification, particularly at low concentrations. Here we show that digitizing, or counting SERS events, can decrease the limit of detection in flowing solutions enabling quantification of single molecules. By using multivariate curve resolution and establishing a score threshold, each individual spectrum can be classified as containing an event or not. This binary “yes/no” can then be quantified, and a linear region can be established. This method was shown to lower the limit of detection to the lowest physical limit, and lowered the limit of detection by an order of magnitude from the traditional, intensity based LOD calculations.
表面增强拉曼散射(SERS)提供了一种无标记方法,可从多种复杂信号中分析分子,并可能具有单分子灵敏度。SERS 光谱中固有的化学特异性可以识别分子,但等离子体环境的多样性导致的信号变异会限制定量,尤其是在低浓度情况下。在这里,我们展示了数字化或计数 SERS 事件可以降低流动溶液中的检测极限,从而实现单分子定量。通过使用多元曲线分辨率和建立分数阈值,每个单独的光谱都可以被分类为是否包含一个事件。然后可以对这种二元 "是/否 "进行量化,并建立一个线性区域。事实证明,这种方法可将检测限降至最低物理极限,与传统的基于强度的 LOD 计算方法相比,检测限降低了一个数量级。
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引用次数: 0
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