QiKe Wang, JieMiao Yu, ZhaoXiang Zhong, Cai Hui, Yi Zhang, Huizhou liu and LiangRong Yang
Sensitive and rapid detection methods for rare earth elements (REEs), including lanthanides (Lns), will facilitate the mining and recovery of these elements. Here, we innovated a rapid, highly selective and sensitive fluorescence detection method for Lns, based on Hans-Lanmodulin, a newly discovered protein with high selectivity and binding affinity for rare earth elements. By labelling the fluorescein moiety FITC onto Hans-Lanmodulin, named as FITC-Hans-LanM. When rare earth ions are present in solution, FITC-Hans-LanM will specifically bind rare earth ions undergoing a conformational change from a disordered state to a dimer, in which the FITC molecules come close to each other, resulting in decreasing fluorescence intensity or even quenching. The assay was responsive to light, medium and heavy rare earth ions. The fluorescence signal has a good linear relationship with Nd3+ concentration in the range of 1–20 nM. The detection limit of the method was 0.512 nM, within 1 min. This method could become a useful technique for the detection and quantification of rare earth elements in environmental and industrial samples.
灵敏和快速的稀土元素(ree)检测方法,包括镧系元素(Lns),将促进这些元素的开采和回收。在这里,我们创新了一种快速,高选择性和敏感的荧光检测方法,基于Hans-Lanmodulin,一种新发现的对稀土元素具有高选择性和结合亲和力的蛋白质。通过将荧光素片段FITC标记到Hans-Lanmodulin上,命名为FITC- hans - lanm。当溶液中存在稀土离子时,FITC- hans - lanm会特异性结合稀土离子,发生从无序态到二聚体的构象变化,其中FITC分子相互靠近,导致荧光强度降低甚至猝灭。该方法对轻、中、重稀土离子均有响应。荧光信号与Nd3+浓度在1 ~ 20 nM范围内呈良好的线性关系。该方法在1 min内检出限为0.512 nM,为环境样品和工业样品中稀土元素的检测和定量提供了一种有效的方法。
{"title":"A lanmodulin-based fluorescent assay for the rapid and sensitive detection of rare earth elements†","authors":"QiKe Wang, JieMiao Yu, ZhaoXiang Zhong, Cai Hui, Yi Zhang, Huizhou liu and LiangRong Yang","doi":"10.1039/D4AN01196A","DOIUrl":"10.1039/D4AN01196A","url":null,"abstract":"<p >Sensitive and rapid detection methods for rare earth elements (REEs), including lanthanides (Lns), will facilitate the mining and recovery of these elements. Here, we innovated a rapid, highly selective and sensitive fluorescence detection method for Lns, based on Hans-Lanmodulin, a newly discovered protein with high selectivity and binding affinity for rare earth elements. By labelling the fluorescein moiety FITC onto Hans-Lanmodulin, named as FITC-Hans-LanM. When rare earth ions are present in solution, FITC-Hans-LanM will specifically bind rare earth ions undergoing a conformational change from a disordered state to a dimer, in which the FITC molecules come close to each other, resulting in decreasing fluorescence intensity or even quenching. The assay was responsive to light, medium and heavy rare earth ions. The fluorescence signal has a good linear relationship with Nd<small><sup>3+</sup></small> concentration in the range of 1–20 nM. The detection limit of the method was 0.512 nM, within 1 min. This method could become a useful technique for the detection and quantification of rare earth elements in environmental and industrial samples.</p>","PeriodicalId":63,"journal":{"name":"Analyst","volume":" 4","pages":" 750-759"},"PeriodicalIF":3.6,"publicationDate":"2025-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143020726","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Various technical methodologies are required to accurately detect substances of different chemical and pharmacological properties in biological samples, which are increasing in number and variety daily. Therefore, laboratories where many samples and different factors are analyzed simultaneously need methods with easy sample preparation, short analysis times and low analysis costs. In this study, the objective was to scan substances susceptible to chemical degradation, amenable to analysis without hydrolysis, and exhibiting short-term stability by employing a straightforward, expeditious, and cost-efficient method. For this purpose, a high-throughput dilute and shoot screening protocol was developed and validated utilizing high-performance liquid chromatography coupled with high-resolution mass spectrometry to analyze various pharmacological compounds in horse urine and plasma. Over 200 prohibited substances across multiple categories were scanned within a 13 minute run. Chromatographic separation was performed on a C18 column using an elution gradient of mobile phase A, 5 mM ammonium bicarbonate at pH 9, and mobile phase B, methanol, at a flow rate of 0.3 mL min−1. The method was validated according to the specifications of 2002/657/EC multi-screening requirements. The detection capability ranged from ≤1 to 200 ng mL−1 for prohibited substances. The implementation of the screening method in doping analysis, and the analysis of real positive case samples served to underscore the practical applicability of the developed method. To the best of our knowledge, this is a rare method that can be applied to both urine and plasma samples and provides a rapid, practical, broad-spectrum, and high-throughput analysis of prohibited substances in horse plasma and urine cost-effectively.
为了准确地检测生物样品中不同化学和药理学性质的物质,需要各种技术方法,这些物质的数量和种类每天都在增加。因此,同时分析多种样品和不同因素的实验室需要样品制备简单、分析时间短、分析成本低的方法。在这项研究中,目的是扫描易受化学降解的物质,可以在没有水解的情况下进行分析,并通过采用直接,快速和经济有效的方法表现出短期稳定性。为此,开发了一种高通量稀释和射击筛选方案,并利用高效液相色谱法和高分辨率质谱法对马尿液和血浆中的各种药理化合物进行了分析。该系统在13分钟内扫描了200多种违禁物质。色谱分离在C18柱上进行,流动相a为5 mM碳酸氢铵(pH = 9),流动相B为甲醇,流速为0.3 mL min - 1。根据2002/657/EC的多重筛选要求对该方法进行了验证。对违禁物质的检测能力范围为≤1 ~ 200ng mL−1。筛选方法在兴奋剂分析中的实施,以及对真实阳性病例样本的分析,都表明了所开发方法的实用性。据我们所知,这是一种罕见的方法,可以同时应用于尿液和血浆样本,并提供快速、实用、广谱和高通量分析马血浆和尿液中的违禁物质,成本效益高。
{"title":"Screening analysis of doping agents in horse urine and plasma with dilute and shoot using liquid chromatography high resolution mass spectrometry†","authors":"Eylem Funda Göktaş, Erol Kabil, Esma Söylemez Yeşilçimen and Levent Dirikolu","doi":"10.1039/D4AN01501K","DOIUrl":"10.1039/D4AN01501K","url":null,"abstract":"<p >Various technical methodologies are required to accurately detect substances of different chemical and pharmacological properties in biological samples, which are increasing in number and variety daily. Therefore, laboratories where many samples and different factors are analyzed simultaneously need methods with easy sample preparation, short analysis times and low analysis costs. In this study, the objective was to scan substances susceptible to chemical degradation, amenable to analysis without hydrolysis, and exhibiting short-term stability by employing a straightforward, expeditious, and cost-efficient method. For this purpose, a high-throughput dilute and shoot screening protocol was developed and validated utilizing high-performance liquid chromatography coupled with high-resolution mass spectrometry to analyze various pharmacological compounds in horse urine and plasma. Over 200 prohibited substances across multiple categories were scanned within a 13 minute run. Chromatographic separation was performed on a C18 column using an elution gradient of mobile phase A, 5 mM ammonium bicarbonate at pH 9, and mobile phase B, methanol, at a flow rate of 0.3 mL min<small><sup>−1</sup></small>. The method was validated according to the specifications of 2002/657/EC multi-screening requirements. The detection capability ranged from ≤1 to 200 ng mL<small><sup>−1</sup></small> for prohibited substances. The implementation of the screening method in doping analysis, and the analysis of real positive case samples served to underscore the practical applicability of the developed method. To the best of our knowledge, this is a rare method that can be applied to both urine and plasma samples and provides a rapid, practical, broad-spectrum, and high-throughput analysis of prohibited substances in horse plasma and urine cost-effectively.</p>","PeriodicalId":63,"journal":{"name":"Analyst","volume":" 4","pages":" 773-792"},"PeriodicalIF":3.6,"publicationDate":"2025-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143020674","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The expansion of the seafood market has led to an increased probability of food fraud. The development of rapid and reliable traceability methods for aquatic food products is of utmost importance. In this study, direct analysis and identification of the intestinal microbiota of aquatic foods were conducted. The validity of using BacteriaMS database searching for identification of bacteria was assessed and demonstrated through analyzing prepared bacterial mixtures. We focused on shrimp as a model for aquatic food products, and utilized matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) to analyze the intestinal microflora of Chinese shrimp (Fenneropenaeus chinensis) collected from three different aquaculture farms in China. It was found that the most dominant bacteria found in shrimp's intestines could serve as a basis for distinguishing shrimps' geographical origin. The most dominant bacteria in the intestines varied among shrimps from different origins, but remained identical for shrimps from the same origin. The reliability of the method in tracing the geographic origin of aquatic products was further validated by analysis of black tiger shrimp (Penaeus monodon) from different origins. The findings show that the utilization of MALDI-TOF MS for the analysis of the microbial community in the intestines of shrimp samples combined with bacterial library searching can offer a rapid, accurate, and feasible method that can be employed for determining shrimps' geographical origin. The present protocol was successfully utilized for the traceability of origins of Chinese shrimp (Fenneropenaeus chinensis) and black tiger shrimp (Penaeus monodon). It is promising to extend the present protocol to other aquatic products with regional characteristics, to help combat food fraud in the aquatic products market.
{"title":"Direct analysis and identification of intestinal microflora of shrimp for their geographical traceability via mass spectrometry and bacterial library searching","authors":"Hongyan Bi, Mingyue Yu, Yunxing Li, Yuean Chu","doi":"10.1039/d4an01447b","DOIUrl":"https://doi.org/10.1039/d4an01447b","url":null,"abstract":"The expansion of the seafood market has led to an increased probability of food fraud. The development of rapid and reliable traceability methods for aquatic food products is of utmost importance. In this study, direct analysis and identification of the intestinal microbiota of aquatic foods were conducted. The validity of using BacteriaMS database searching for identification of bacteria was assessed and demonstrated through analyzing prepared bacterial mixtures. We focused on shrimp as a model for aquatic food products, and utilized matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) to analyze the intestinal microflora of Chinese shrimp (Fenneropenaeus chinensis) collected from three different aquaculture farms in China. It was found that the most dominant bacteria found in shrimp's intestines could serve as a basis for distinguishing shrimps' geographical origin. The most dominant bacteria in the intestines varied among shrimps from different origins, but remained identical for shrimps from the same origin. The reliability of the method in tracing the geographic origin of aquatic products was further validated by analysis of black tiger shrimp (Penaeus monodon) from different origins. The findings show that the utilization of MALDI-TOF MS for the analysis of the microbial community in the intestines of shrimp samples combined with bacterial library searching can offer a rapid, accurate, and feasible method that can be employed for determining shrimps' geographical origin. The present protocol was successfully utilized for the traceability of origins of Chinese shrimp (Fenneropenaeus chinensis) and black tiger shrimp (Penaeus monodon). It is promising to extend the present protocol to other aquatic products with regional characteristics, to help combat food fraud in the aquatic products market.","PeriodicalId":63,"journal":{"name":"Analyst","volume":"18 1","pages":""},"PeriodicalIF":4.2,"publicationDate":"2025-01-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142991847","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Huan Ma, Wen-Pei Ni, Qi Lin, Ru Sun and Jian-Feng Ge
Most current nucleic acid-responsive fluorescent probes are enhanced ones with short emission wavelengths. Therefore, the development of novel near-infrared, turn-on response nucleic acid fluorescent probes is of great significance. Herein, three cationic fluorescent dyes 1a–1c were synthesized by reacting naphthalidine salt with suitable aldehydes. These probes exhibited excellent photostability, maintaining over 95% of their absorption rate after 5 h of irradiation. Notably, probes 1a–1c exhibited an OFF–ON fluorescence response to DNA and RNA. The maximum emission wavelength could reach the near-infrared region (661–762 nm), with large Stokes shifts (153–222 nm) upon binding to DNA/RNA. The fluorescence intensity was enhanced 143 fold and 127 fold for 1b upon interaction with DNA and RNA, respectively. Co-staining and nucleic acid digestion assays showed that probes 1a–1c could target the mitochondria of fixed cells with low cytotoxicity. These findings may be useful for the early screening of genetic mutations related to mitochondrial diseases.
{"title":"Near-infrared fluorescent probes based on naphthyridine derivatives for mitochondrial nucleic acid imaging†","authors":"Huan Ma, Wen-Pei Ni, Qi Lin, Ru Sun and Jian-Feng Ge","doi":"10.1039/D4AN01450B","DOIUrl":"10.1039/D4AN01450B","url":null,"abstract":"<p >Most current nucleic acid-responsive fluorescent probes are enhanced ones with short emission wavelengths. Therefore, the development of novel near-infrared, turn-on response nucleic acid fluorescent probes is of great significance. Herein, three cationic fluorescent dyes <strong>1a–1c</strong> were synthesized by reacting naphthalidine salt with suitable aldehydes. These probes exhibited excellent photostability, maintaining over 95% of their absorption rate after 5 h of irradiation. Notably, probes <strong>1a–1c</strong> exhibited an OFF–ON fluorescence response to DNA and RNA. The maximum emission wavelength could reach the near-infrared region (661–762 nm), with large Stokes shifts (153–222 nm) upon binding to DNA/RNA. The fluorescence intensity was enhanced 143 fold and 127 fold for <strong>1b</strong> upon interaction with DNA and RNA, respectively. Co-staining and nucleic acid digestion assays showed that probes <strong>1a–1c</strong> could target the mitochondria of fixed cells with low cytotoxicity. These findings may be useful for the early screening of genetic mutations related to mitochondrial diseases.</p>","PeriodicalId":63,"journal":{"name":"Analyst","volume":" 4","pages":" 642-649"},"PeriodicalIF":3.6,"publicationDate":"2025-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142990435","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Yating Rui, Jianfeng Wu, Qunyong Tang, Juan Pu, Wanpeng Wang and Shou-Nian Ding
Tetramethylpyrazine (TMP) is a compound known for its natural health benefits, but current detection methods for TMP are overly expensive and time-consuming. In this study, we developed functional materials with TMP molecular recognition properties using molecularly imprinted technology. As TMP does not produce electrochemical signals in the detection potential range, hexacyanoferrate was selected as a redox probe, combined with the highly conductive polymer PEDOT:PSS to enhance electrode conductivity. When coupled with the TMP-specific functional materials prepared through molecular imprinting, an electrochemical sensor specifically recognizing TMP was successfully developed, and this was confirmed through characterization techniques such as ultraviolet spectroscopy and scanning electron microscopy. Additionally, the crucial experimental parameters were optimized for improved performance. Under optimal conditions, the use of differential pulse voltammetry (DPV) to measure the peak currents of hexacyanoferrate showed a linear relationship with TMP concentrations from 0.50 × 10−6 to 5.00 × 10−3 M, achieving a detection limit of 2.1 × 10−7 M. This method proved effective for quantifying TMP in Baijiu samples, demonstrating good precision with relative standard deviations (RSD) ranging from 2.71% to 3.28%, and recovery percentages between 95.77% and 101.88%. These results indicate the potential of the molecularly imprinted polymer (MIP) sensor for accurately measuring TMP in actual samples.
{"title":"Molecularly imprinted electrochemical sensor to sensitively detect tetramethylpyrazine in Baijiu","authors":"Yating Rui, Jianfeng Wu, Qunyong Tang, Juan Pu, Wanpeng Wang and Shou-Nian Ding","doi":"10.1039/D4AN01559B","DOIUrl":"10.1039/D4AN01559B","url":null,"abstract":"<p >Tetramethylpyrazine (TMP) is a compound known for its natural health benefits, but current detection methods for TMP are overly expensive and time-consuming. In this study, we developed functional materials with TMP molecular recognition properties using molecularly imprinted technology. As TMP does not produce electrochemical signals in the detection potential range, hexacyanoferrate was selected as a redox probe, combined with the highly conductive polymer PEDOT:PSS to enhance electrode conductivity. When coupled with the TMP-specific functional materials prepared through molecular imprinting, an electrochemical sensor specifically recognizing TMP was successfully developed, and this was confirmed through characterization techniques such as ultraviolet spectroscopy and scanning electron microscopy. Additionally, the crucial experimental parameters were optimized for improved performance. Under optimal conditions, the use of differential pulse voltammetry (DPV) to measure the peak currents of hexacyanoferrate showed a linear relationship with TMP concentrations from 0.50 × 10<small><sup>−6</sup></small> to 5.00 × 10<small><sup>−3</sup></small> M, achieving a detection limit of 2.1 × 10<small><sup>−7</sup></small> M. This method proved effective for quantifying TMP in Baijiu samples, demonstrating good precision with relative standard deviations (RSD) ranging from 2.71% to 3.28%, and recovery percentages between 95.77% and 101.88%. These results indicate the potential of the molecularly imprinted polymer (MIP) sensor for accurately measuring TMP in actual samples.</p>","PeriodicalId":63,"journal":{"name":"Analyst","volume":" 5","pages":" 887-893"},"PeriodicalIF":3.6,"publicationDate":"2025-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2025/an/d4an01559b?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142990432","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Xianchen Hu, Yali Xu, Yuexi Lin, Xinghe Chen and Junshan Lin
Methods based on enzyme labelling strategies have been widely developed for capacitance immunoassays, but most suffer from low sensitivity and are unfavorable for routine use in the early stages of diagnostics. Herein, we designed a highly efficient capacitance immunosensing method for the low-abundance neuroblastoma biomarker neuron-specific enolase (NSE) using an interdigitated micro-comb electrode. Initially, monoclonal mouse anti-human NSE capture antibodies were immobilized on the interdigitated gold electrodes using bovine serum albumin. Thereafter, a sandwich-type immunoreaction was carried out in the presence of target NSE using horseradish peroxidase (HRP)-labeled secondary antibodies. The labelled HRP subsequently triggered the formation of tyramine–enzyme conjugate repeats with the help of HRP–tyramine and H2O2. The concatenated HRP molecules catalyzed the oxidation of 4-chloro-1-naphthol to produce an insoluble precipitate on the interdigitated micro-comb electrode, resulting in a shift in capacitance. Two protocols, with and without tyramine–HRP repeats, were investigated for the detection of NSE, with improved analytical performance achieved through tyramine signal amplification. Under optimum conditions, the interdigitated capacitance immunosensors exhibited good responses to target NSE within a dynamic linear range of 1.0–10 000 pg mL−1, with a low detection limit of 0.78 pg mL−1. An intermediate reproducibility of ≤9.67% was accomplished with batch-to-batch consistency, and good anti-interference capacity against other proteins was acquired. No significant differences at the 0.05 significance level were encountered in the analysis of 12 human serum specimens between the developed capacitance immunosensor and the commercially available enzyme-linked immunosorbent assay (ELISA).
{"title":"Tyramine–enzyme conjugate repeats for an interdigitated capacitance immunosensing array in the detection of neuroblastoma biomarker neuron-specific enolase","authors":"Xianchen Hu, Yali Xu, Yuexi Lin, Xinghe Chen and Junshan Lin","doi":"10.1039/D4AN01442A","DOIUrl":"10.1039/D4AN01442A","url":null,"abstract":"<p >Methods based on enzyme labelling strategies have been widely developed for capacitance immunoassays, but most suffer from low sensitivity and are unfavorable for routine use in the early stages of diagnostics. Herein, we designed a highly efficient capacitance immunosensing method for the low-abundance neuroblastoma biomarker neuron-specific enolase (NSE) using an interdigitated micro-comb electrode. Initially, monoclonal mouse anti-human NSE capture antibodies were immobilized on the interdigitated gold electrodes using bovine serum albumin. Thereafter, a sandwich-type immunoreaction was carried out in the presence of target NSE using horseradish peroxidase (HRP)-labeled secondary antibodies. The labelled HRP subsequently triggered the formation of tyramine–enzyme conjugate repeats with the help of HRP–tyramine and H<small><sub>2</sub></small>O<small><sub>2</sub></small>. The concatenated HRP molecules catalyzed the oxidation of 4-chloro-1-naphthol to produce an insoluble precipitate on the interdigitated micro-comb electrode, resulting in a shift in capacitance. Two protocols, with and without tyramine–HRP repeats, were investigated for the detection of NSE, with improved analytical performance achieved through tyramine signal amplification. Under optimum conditions, the interdigitated capacitance immunosensors exhibited good responses to target NSE within a dynamic linear range of 1.0–10 000 pg mL<small><sup>−1</sup></small>, with a low detection limit of 0.78 pg mL<small><sup>−1</sup></small>. An intermediate reproducibility of ≤9.67% was accomplished with batch-to-batch consistency, and good anti-interference capacity against other proteins was acquired. No significant differences at the 0.05 significance level were encountered in the analysis of 12 human serum specimens between the developed capacitance immunosensor and the commercially available enzyme-linked immunosorbent assay (ELISA).</p>","PeriodicalId":63,"journal":{"name":"Analyst","volume":" 5","pages":" 914-921"},"PeriodicalIF":3.6,"publicationDate":"2025-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142990438","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Baoying Zhang, Shengjie Yang, Xuyuan Chao, Lu Qi, Weijie Qin, Haihong Bai and Xinghe Wang
Protein N-glycosylation, as one of the most crucial post-translational modifications, plays a significant role in various biological processes. The structural alterations of N-glycans are closely associated with the onset and progression of numerous diseases. Therefore, the precise and specific identification of disease-related N-glycans in complex biological samples is invaluable for understanding their involvement in physiological and pathological processes, as well as for discovering clinical diagnostic biomarkers. However, protein N-glycosylation suffers from microscopic heterogeneity and low abundance in biological systems, leading to N-glycopeptide signals being overshadowed by those of their non-glycosylated counterparts during mass spectrometry (MS) analysis. Consequently, there is an urgent demand for the development of novel methods for highly efficient N-glycan enrichment. In this study, we introduced a novel hydrophilic nanomaterial, nitrogen-modified reduced graphene oxide (N-rGO), tailored for this purpose, which was formed by a condensation reaction between the amino groups of rGO and the carboxyl groups of Fmoc-Photo-Linker. Compared to other enrichment materials, N-rGO not only supports efficient N-glycans enrichment via hydrophilic interaction (HILIC), but also serves as an effective matrix for direct MALDI-TOF MS analysis combined with DHB, thereby avoiding sample loss during N-glycans release. 76 and 81 serum N-glycans were obtained from 3 healthy individuals and 3 hepatocellular carcinoma (HCC) patients. Notably, relative quantification of serum N-glycans between 20 patients and 20 healthy controls showed significant expression differences, such as H5N4F1S1, H6N5F1, H5N4S2, H5N4F2S1 and H5N5F1S1, indicating the potential of N-rGO for biomarker discovery.
{"title":"Nitrogen-modified reduced graphene oxide for serum enrichment of N-glycans and MALDI-TOF MS-based identification of HCC biomarkers†","authors":"Baoying Zhang, Shengjie Yang, Xuyuan Chao, Lu Qi, Weijie Qin, Haihong Bai and Xinghe Wang","doi":"10.1039/D4AN01324G","DOIUrl":"10.1039/D4AN01324G","url":null,"abstract":"<p >Protein <em>N</em>-glycosylation, as one of the most crucial post-translational modifications, plays a significant role in various biological processes. The structural alterations of <em>N</em>-glycans are closely associated with the onset and progression of numerous diseases. Therefore, the precise and specific identification of disease-related <em>N</em>-glycans in complex biological samples is invaluable for understanding their involvement in physiological and pathological processes, as well as for discovering clinical diagnostic biomarkers. However, protein <em>N</em>-glycosylation suffers from microscopic heterogeneity and low abundance in biological systems, leading to <em>N</em>-glycopeptide signals being overshadowed by those of their non-glycosylated counterparts during mass spectrometry (MS) analysis. Consequently, there is an urgent demand for the development of novel methods for highly efficient <em>N</em>-glycan enrichment. In this study, we introduced a novel hydrophilic nanomaterial, nitrogen-modified reduced graphene oxide (N-rGO), tailored for this purpose, which was formed by a condensation reaction between the amino groups of rGO and the carboxyl groups of Fmoc-Photo-Linker. Compared to other enrichment materials, N-rGO not only supports efficient <em>N</em>-glycans enrichment <em>via</em> hydrophilic interaction (HILIC), but also serves as an effective matrix for direct MALDI-TOF MS analysis combined with DHB, thereby avoiding sample loss during <em>N</em>-glycans release. 76 and 81 serum <em>N</em>-glycans were obtained from 3 healthy individuals and 3 hepatocellular carcinoma (HCC) patients. Notably, relative quantification of serum <em>N</em>-glycans between 20 patients and 20 healthy controls showed significant expression differences, such as H<small><sub>5</sub></small>N<small><sub>4</sub></small>F<small><sub>1</sub></small>S<small><sub>1</sub></small>, H<small><sub>6</sub></small>N<small><sub>5</sub></small>F<small><sub>1</sub></small>, H<small><sub>5</sub></small>N<small><sub>4</sub></small>S<small><sub>2</sub></small>, H<small><sub>5</sub></small>N<small><sub>4</sub></small>F<small><sub>2</sub></small>S<small><sub>1</sub></small> and H<small><sub>5</sub></small>N<small><sub>5</sub></small>F<small><sub>1</sub></small>S<small><sub>1</sub></small>, indicating the potential of N-rGO for biomarker discovery.</p>","PeriodicalId":63,"journal":{"name":"Analyst","volume":" 4","pages":" 650-660"},"PeriodicalIF":3.6,"publicationDate":"2025-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142990433","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Guangzhu Du, Cheng Chen, Yun Cui, Beibei Huang, Yi Zheng, Jingyu Yan, Danyi Shang, Xuefang Dong, Meihua Jin and Xiuling Li
Although the glycosylation of viral proteins plays a critical role in the process of viral invasion into host cells, studies on the glycosylation of monkeypox virus (MPXV) structural proteins have not yet been reported. To investigate the importance of MPXV protein glycosylation, poly Ser-Arg (poly SR) materials capable of simultaneously enriching both N-glycopeptides and O-glycopeptides were synthesized by surface-initiated reversible addition–fragmentation chain transfer (SI-RAFT) polymerization. The poly SR materials were evaluated using the digest mixture of standard proteins containing bovine fetuin and bovine serum albumin, and the digest of complex biological samples including bovine sperm tail lysate, mouse sperm tail lysate, mouse brain lysate, and human serum. The poly SR materials demonstrated excellent glycopeptide enrichment performance. Subsequently, poly SR materials were applied to comprehensively analyze the N-glycosylation and O-glycosylation of the MPXV structural proteins A29, A35, B6R, and H3L, revealing that these proteins are highly sialylated. To further elucidate the mechanism of MPXV protein infection, the strong specific binding of A29 to heparan sulfate and chondroitin sulfate was determined using glycan microarrays. These findings provide a foundation for understanding the viral infection mechanism and developing vaccines and antiviral drugs.
{"title":"Glycosylation profiling of monkeypox virus structural proteins with poly Ser-Arg materials†","authors":"Guangzhu Du, Cheng Chen, Yun Cui, Beibei Huang, Yi Zheng, Jingyu Yan, Danyi Shang, Xuefang Dong, Meihua Jin and Xiuling Li","doi":"10.1039/D4AN01274G","DOIUrl":"10.1039/D4AN01274G","url":null,"abstract":"<p >Although the glycosylation of viral proteins plays a critical role in the process of viral invasion into host cells, studies on the glycosylation of monkeypox virus (MPXV) structural proteins have not yet been reported. To investigate the importance of MPXV protein glycosylation, poly Ser-Arg (poly SR) materials capable of simultaneously enriching both <em>N</em>-glycopeptides and <em>O</em>-glycopeptides were synthesized by surface-initiated reversible addition–fragmentation chain transfer (SI-RAFT) polymerization. The poly SR materials were evaluated using the digest mixture of standard proteins containing bovine fetuin and bovine serum albumin, and the digest of complex biological samples including bovine sperm tail lysate, mouse sperm tail lysate, mouse brain lysate, and human serum. The poly SR materials demonstrated excellent glycopeptide enrichment performance. Subsequently, poly SR materials were applied to comprehensively analyze the <em>N</em>-glycosylation and <em>O</em>-glycosylation of the MPXV structural proteins A29, A35, B6R, and H3L, revealing that these proteins are highly sialylated. To further elucidate the mechanism of MPXV protein infection, the strong specific binding of A29 to heparan sulfate and chondroitin sulfate was determined using glycan microarrays. These findings provide a foundation for understanding the viral infection mechanism and developing vaccines and antiviral drugs.</p>","PeriodicalId":63,"journal":{"name":"Analyst","volume":" 4","pages":" 680-691"},"PeriodicalIF":3.6,"publicationDate":"2025-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142990431","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Rebecca R. Martens, Lea Gozdzialski, Ella Newman, Chris Gill, Bruce Wallace and Dennis K. Hore
Infrared absorption spectroscopy and surface-enhanced Raman spectroscopy were integrated into three data fusion strategies—hybrid (concatenated spectra), mid-level (extracted features from both datasets) and high-level (fusion of predictions from both models)—to enhance the predictive accuracy for xylazine detection in illicit opioid samples. Three chemometric approaches—random forest, support vector machine, and k-nearest neighbor algorithms—were employed and optimized using a 5-fold cross-validation grid search for all fusion strategies. Validation results identified the random forest classifier as the optimal model for all fusion strategies, achieving high sensitivity (88% for hybrid, 92% for mid-level, and 96% for high-level) and specificity (88% for hybrid, mid-level, and high-level). The enhanced performance of the high-level fusion approach (F1 score of 92%) is demonstrated, effectively leveraging the surface-enhanced Raman data with a 90% voting weight, without compromising prediction accuracy (92%) when combined with infrared spectral data. This highlights the viability of a multi-instrument approach using data fusion and random forest classification to improve the detection of various components in complex opioid samples in a point-of-care setting.
{"title":"Optimized machine learning approaches to combine surface-enhanced Raman scattering and infrared data for trace detection of xylazine in illicit opioids†","authors":"Rebecca R. Martens, Lea Gozdzialski, Ella Newman, Chris Gill, Bruce Wallace and Dennis K. Hore","doi":"10.1039/D4AN01496K","DOIUrl":"10.1039/D4AN01496K","url":null,"abstract":"<p >Infrared absorption spectroscopy and surface-enhanced Raman spectroscopy were integrated into three data fusion strategies—hybrid (concatenated spectra), mid-level (extracted features from both datasets) and high-level (fusion of predictions from both models)—to enhance the predictive accuracy for xylazine detection in illicit opioid samples. Three chemometric approaches—random forest, support vector machine, and <em>k</em>-nearest neighbor algorithms—were employed and optimized using a 5-fold cross-validation grid search for all fusion strategies. Validation results identified the random forest classifier as the optimal model for all fusion strategies, achieving high sensitivity (88% for hybrid, 92% for mid-level, and 96% for high-level) and specificity (88% for hybrid, mid-level, and high-level). The enhanced performance of the high-level fusion approach (F1 score of 92%) is demonstrated, effectively leveraging the surface-enhanced Raman data with a 90% voting weight, without compromising prediction accuracy (92%) when combined with infrared spectral data. This highlights the viability of a multi-instrument approach using data fusion and random forest classification to improve the detection of various components in complex opioid samples in a point-of-care setting.</p>","PeriodicalId":63,"journal":{"name":"Analyst","volume":" 4","pages":" 700-711"},"PeriodicalIF":3.6,"publicationDate":"2025-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2025/an/d4an01496k?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142988102","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Satomy Pousa, Pablo E. Ramos-Bermúdez, Vladimir Besada, Ania Cabrales-Rico, Osmany Guirola Cruz, Hilda Elisa Garay, Alina Rodríguez-Mallón, Katharina Zettl, Jacek R. Wiśniewski, Luis Javier González
Keyhole limpet haemocyanins (KLH1 and KLH2) from Megathura crenulata, are multi-subunit oxygen-carrying metalloproteins of approximately 3900 amino acids, that are widely used as carrier proteins in conjugate vaccines and in immunotherapy. KLHs and their derived conjugate vaccines are poorly characterized by LC-MS/MS due to their very stable supramolecular structures with megadalton molecular mass, and their resistance to efficient digestion with standard protocols. KLH1 and KLH2 proteins were conjugated to the conserved P0 peptide (pP0), derived from the P0 acidic ribosomal protein of Rhipicephalus sp. ticks using maleimide–thiol chemistry to obtain a broad-spectrum anti-tick vaccine. The resulting KLH1– and KLH2–Cys1pP0 conjugate vaccines were efficiently digested using the Multiple-Enzymatic Digestion Filter Aided Sample Preparation and analyzed by LC-MS/MS, enabling a sequence coverage of approximately 85% of both conjugates. Seventy-three and sixty-five percent of all lysine residues in KLH1 and KLH2, respectively, were partially conjugated to Cys1pP0. In the quaternary structures, we found no bias toward conjugation of lysine residues exposed to either the outer surface or the inner channel. The latter may not contribute to a protective humoral response because B cell entry into the inner channel is incompatible with the entrance hole diameter. The Cys-His thioether bonds in both KLHs were determined by identifying type 1 cross-linked peptides. New post-translational modifications undescribed for the KLH such as oxidized species, were identified. This is the first report of the identification of conjugation sites of two KLH-based vaccines. These results will help translate the KLH-based conjugates into well-characterized biotechnology products.
{"title":"Characterization by LC-MS/MS analysis of KLH vaccine conjugated with a tick antigen peptide","authors":"Satomy Pousa, Pablo E. Ramos-Bermúdez, Vladimir Besada, Ania Cabrales-Rico, Osmany Guirola Cruz, Hilda Elisa Garay, Alina Rodríguez-Mallón, Katharina Zettl, Jacek R. Wiśniewski, Luis Javier González","doi":"10.1039/d4an01449a","DOIUrl":"https://doi.org/10.1039/d4an01449a","url":null,"abstract":"Keyhole limpet haemocyanins (KLH1 and KLH2) from <em>Megathura crenulata</em>, are multi-subunit oxygen-carrying metalloproteins of approximately 3900 amino acids, that are widely used as carrier proteins in conjugate vaccines and in immunotherapy. KLHs and their derived conjugate vaccines are poorly characterized by LC-MS/MS due to their very stable supramolecular structures with megadalton molecular mass, and their resistance to efficient digestion with standard protocols. KLH1 and KLH2 proteins were conjugated to the conserved P0 peptide (pP0), derived from the P0 acidic ribosomal protein of <em>Rhipicephalus</em> sp. ticks using maleimide–thiol chemistry to obtain a broad-spectrum anti-tick vaccine. The resulting KLH1– and KLH2–Cys<small><sup>1</sup></small>pP0 conjugate vaccines were efficiently digested using the Multiple-Enzymatic Digestion Filter Aided Sample Preparation and analyzed by LC-MS/MS, enabling a sequence coverage of approximately 85% of both conjugates. Seventy-three and sixty-five percent of all lysine residues in KLH1 and KLH2, respectively, were partially conjugated to Cys<small><sup>1</sup></small>pP0. In the quaternary structures, we found no bias toward conjugation of lysine residues exposed to either the outer surface or the inner channel. The latter may not contribute to a protective humoral response because B cell entry into the inner channel is incompatible with the entrance hole diameter. The Cys-His thioether bonds in both KLHs were determined by identifying type 1 cross-linked peptides. New post-translational modifications undescribed for the KLH such as oxidized species, were identified. This is the first report of the identification of conjugation sites of two KLH-based vaccines. These results will help translate the KLH-based conjugates into well-characterized biotechnology products.","PeriodicalId":63,"journal":{"name":"Analyst","volume":"22 1","pages":""},"PeriodicalIF":4.2,"publicationDate":"2025-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142986571","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}