Pub Date : 2024-10-16DOI: 10.1007/s10910-024-01676-8
Subhash C. Basak, Tanmoy Chakraborty
{"title":"Guest editorial for the special collection of mathematical chemistry papers","authors":"Subhash C. Basak, Tanmoy Chakraborty","doi":"10.1007/s10910-024-01676-8","DOIUrl":"10.1007/s10910-024-01676-8","url":null,"abstract":"","PeriodicalId":648,"journal":{"name":"Journal of Mathematical Chemistry","volume":"62 10","pages":"2371 - 2372"},"PeriodicalIF":1.7,"publicationDate":"2024-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142518493","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-17DOI: 10.1007/s10910-024-01675-9
K. V. Tamil Selvi, Navnit Jha, A. Eswari, L. Rajendran
This paper discusses mathematical model of hydrogen evolution via ({H}^{+}) and ({H}_{2}O) reduction at a rotating disc electrode. Rotating disc electrodes are the preferred technology for analysing electrochemical processes in electrically powered cells and another rotating machinery, such as combustion engines, air compressors, gearboxes, and generators. The theory of nonlinear convection–diffusion equations provides the foundation for the model. In the present study, the Akbari-Ganji approach is utilised to solve, concurrently, the mass transport equations of ({H}^{+}) and ({OH}^{-}) in the electrolyte and on the electrode surface under steady-state circumstances. A general and simple analytical expression is obtained for the reactants' hydrogen and hydroxide ion concentrations. Additionally, numerical solutions using non-standard finite difference methods are presented, and compared with the analytical solution. The exact solution for the limiting case results is presented and examined with the general results. Furthermore, the graphs and tables that compare the theoretical and numerical solutions demonstrated the accuracy and dependability of our paradigm.
{"title":"Mathematical modeling of hydrogen evolution by $${{{H}}}^{+}$$ and $${{{H}}}_{2}{{O}}$$ reduction at a rotating disk electrode: theoretical and numerical aspects","authors":"K. V. Tamil Selvi, Navnit Jha, A. Eswari, L. Rajendran","doi":"10.1007/s10910-024-01675-9","DOIUrl":"https://doi.org/10.1007/s10910-024-01675-9","url":null,"abstract":"<p>This paper discusses mathematical model of hydrogen evolution via <span>({H}^{+})</span> and <span>({H}_{2}O)</span> reduction at a rotating disc electrode. Rotating disc electrodes are the preferred technology for analysing electrochemical processes in electrically powered cells and another rotating machinery, such as combustion engines, air compressors, gearboxes, and generators. The theory of nonlinear convection–diffusion equations provides the foundation for the model. In the present study, the Akbari-Ganji approach is utilised to solve, concurrently, the mass transport equations of <span>({H}^{+})</span> and <span>({OH}^{-})</span> in the electrolyte and on the electrode surface under steady-state circumstances. A general and simple analytical expression is obtained for the reactants' hydrogen and hydroxide ion concentrations. Additionally, numerical solutions using non-standard finite difference methods are presented, and compared with the analytical solution. The exact solution for the limiting case results is presented and examined with the general results. Furthermore, the graphs and tables that compare the theoretical and numerical solutions demonstrated the accuracy and dependability of our paradigm.</p>","PeriodicalId":648,"journal":{"name":"Journal of Mathematical Chemistry","volume":"45 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-09-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142262387","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-17DOI: 10.1007/s10910-024-01668-8
Mei Hong, Chia-Liang Lin, T. E. Simos
Using a technique that accounts for disappearing phase-lag might lead to the elimination of phase-lag and all of its derivatives up to order four. The new technique known as the cost-efficient approach aims to improve algebraic order (AOR) and decrease function evaluations (FEvs). The one-of-a-kind approach is shown by Equation PF4DPHFITN142SPS. This method is endlessly periodic since it is P-Stable. The proposed method may be used to solve many different types of periodic and/or oscillatory problems. This innovative method was used to address the difficult issue of Schrödinger-type coupled differential equations in quantum chemistry. The new technique might be seen as a cost-efficient solution since it only requires 5FEvs to execute each step. We are able to greatly ameliorate our current situation with an AOR of 14.
{"title":"A first-rate fourteenth-order phase-fitting approach to solving chemical problems","authors":"Mei Hong, Chia-Liang Lin, T. E. Simos","doi":"10.1007/s10910-024-01668-8","DOIUrl":"https://doi.org/10.1007/s10910-024-01668-8","url":null,"abstract":"<p>Using a technique that accounts for disappearing phase-lag might lead to the elimination of phase-lag and all of its derivatives up to order four. The new technique known as the <b>cost-efficient approach</b> aims to improve algebraic order (<i>AOR</i>) and decrease function evaluations (<i>FEvs</i>). The one-of-a-kind approach is shown by Equation <i>PF</i>4<i>DPHFITN</i>142<i>SPS</i>. This method is endlessly periodic since it is <b>P-Stable</b>. The proposed method may be used to solve many different types of periodic and/or oscillatory problems. This innovative method was used to address the difficult issue of Schrödinger-type coupled differential equations in quantum chemistry. The new technique might be seen as a cost-efficient solution since it only requires 5<i>FEvs</i> to execute each step. We are able to greatly ameliorate our current situation with an AOR of 14.</p>","PeriodicalId":648,"journal":{"name":"Journal of Mathematical Chemistry","volume":"56 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-09-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142269933","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-16DOI: 10.1007/s10910-024-01673-x
Jan Hellwig, Klaus Neymeyr
Lorentz, Gauss, Voigt and pseudo-Voigt functions play an important role in hard modeling of NMR spectra. This paper shows the uniqueness of continuous NMR hard models in terms of these functions by proving their linear independence. For the case of discrete hard models, where the spectra are represented by finite-dimensional vectors, criteria are given under which the models are also unique.
{"title":"On the uniqueness of continuous and discrete hard models of NMR-spectra","authors":"Jan Hellwig, Klaus Neymeyr","doi":"10.1007/s10910-024-01673-x","DOIUrl":"https://doi.org/10.1007/s10910-024-01673-x","url":null,"abstract":"<p>Lorentz, Gauss, Voigt and pseudo-Voigt functions play an important role in hard modeling of NMR spectra. This paper shows the uniqueness of continuous NMR hard models in terms of these functions by proving their linear independence. For the case of discrete hard models, where the spectra are represented by finite-dimensional vectors, criteria are given under which the models are also unique.\u0000</p>","PeriodicalId":648,"journal":{"name":"Journal of Mathematical Chemistry","volume":"188 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142262389","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-06DOI: 10.1007/s10910-024-01670-0
Reetika Chawla, Devendra Kumar, J. Vigo-Aguiar
The time-fractional fourth-order reaction-diffusion problem, which contains more than one time-fractional derivative of orders lying between 0 and 1, is considered. This problem is the generalized version of the problem discussed by Nikan et al. Appl. Math. Model. 89 (2021), 819–836 that has only one time-fractional derivative. It is widely used in the study of chemical waves and patterns in reaction-diffusion systems. The analysis of non-smooth solutions to this problem is discussed broadly using the Caputo-time fractional derivative. The non-smooth solutions to the problem have a weak singularity close to zero that can be efficiently handled by considering the non-uniform mesh. The method based on the non-uniform time stepping is an efficacious way to regain accuracy. The current study presents the trigonometric quintic B-spline approach to solve this multi-term time-fractional fourth-order problem using graded mesh and effective grading parameters. The stability and convergence results are proved through rigorous analysis, which helps choose the optimal grading parameter. The accuracy and effectiveness of our technique are observed in our numerical experiments that manifest the comparison of uniform and non-uniform meshes.
{"title":"Numerical analysis of fourth-order multi-term fractional reaction-diffusion equation arises in chemical reactions","authors":"Reetika Chawla, Devendra Kumar, J. Vigo-Aguiar","doi":"10.1007/s10910-024-01670-0","DOIUrl":"https://doi.org/10.1007/s10910-024-01670-0","url":null,"abstract":"<p>The time-fractional fourth-order reaction-diffusion problem, which contains more than one time-fractional derivative of orders lying between 0 and 1, is considered. This problem is the generalized version of the problem discussed by Nikan et al. Appl. Math. Model. 89 (2021), 819–836 that has only one time-fractional derivative. It is widely used in the study of chemical waves and patterns in reaction-diffusion systems. The analysis of non-smooth solutions to this problem is discussed broadly using the Caputo-time fractional derivative. The non-smooth solutions to the problem have a weak singularity close to zero that can be efficiently handled by considering the non-uniform mesh. The method based on the non-uniform time stepping is an efficacious way to regain accuracy. The current study presents the trigonometric quintic B-spline approach to solve this multi-term time-fractional fourth-order problem using graded mesh and effective grading parameters. The stability and convergence results are proved through rigorous analysis, which helps choose the optimal grading parameter. The accuracy and effectiveness of our technique are observed in our numerical experiments that manifest the comparison of uniform and non-uniform meshes.</p>","PeriodicalId":648,"journal":{"name":"Journal of Mathematical Chemistry","volume":"17 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-09-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142179938","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-27DOI: 10.1007/s10910-024-01664-y
Shipra Tripathi, Abhi Sarika Bharti, Kailash Narayan Uttam, C. K. Dixit, Anjani K. Pandey
The diatomic molecules have gained increased interest over the past several years in both experiment and theoretical studies because of their importance in astrophysical processes and many chemical reactions. Thermodynamical quantities such as enthalpy, entropy, heat capacity and free energy have their potential applications in various fields of science. Investigations in high temperature chemistry, astrophysics, and other disciplines require the knowledge of the thermodynamic properties of diatomic molecules. The plausibility of predictive models obtained in such investigations relies on the accuracy of these data. The scrutiny of the literature reveals that thermodynamic data are often absent or have scattered values in different research articles and handbooks. The main requirements to thermodynamic values are their reliability, mutual consistency, and so forth. In the present theoretical study, thermodynamic values are estimated by using spectroscopic data which are microscopic in nature, whereas thermodynamical quantities are macroscopic in nature. Attempts have been made to calculate the thermodynamical quantities of silver monohalides (AgF, AgCl, AgBr and AgI) from spectroscopic data with the help of partition function theory. The results have been calculated in the temperature range 100–3000 °C. In order to increase accuracy of the calculated quantities, we have incorporated non-rigidity, anharmonocity, and stretching effects of molecules. The variation of these quantities with temperature have been studied and explained in terms of various modes of molecular motions.
{"title":"Thermodynamical quantities of silver mono halides from spectroscopic data","authors":"Shipra Tripathi, Abhi Sarika Bharti, Kailash Narayan Uttam, C. K. Dixit, Anjani K. Pandey","doi":"10.1007/s10910-024-01664-y","DOIUrl":"https://doi.org/10.1007/s10910-024-01664-y","url":null,"abstract":"<p>The diatomic molecules have gained increased interest over the past several years in both experiment and theoretical studies because of their importance in astrophysical processes and many chemical reactions. Thermodynamical quantities such as enthalpy, entropy, heat capacity and free energy have their potential applications in various fields of science. Investigations in high temperature chemistry, astrophysics, and other disciplines require the knowledge of the thermodynamic properties of diatomic molecules. The plausibility of predictive models obtained in such investigations relies on the accuracy of these data. The scrutiny of the literature reveals that thermodynamic data are often absent or have scattered values in different research articles and handbooks. The main requirements to thermodynamic values are their reliability, mutual consistency, and so forth. In the present theoretical study, thermodynamic values are estimated by using spectroscopic data which are microscopic in nature, whereas thermodynamical quantities are macroscopic in nature. Attempts have been made to calculate the thermodynamical quantities of silver monohalides (AgF, AgCl, AgBr and AgI) from spectroscopic data with the help of partition function theory. The results have been calculated in the temperature range 100–3000 °C. In order to increase accuracy of the calculated quantities, we have incorporated non-rigidity, anharmonocity, and stretching effects of molecules. The variation of these quantities with temperature have been studied and explained in terms of various modes of molecular motions.</p>","PeriodicalId":648,"journal":{"name":"Journal of Mathematical Chemistry","volume":"172 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-08-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142179939","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-26DOI: 10.1007/s10910-024-01669-7
V. I. Yukalov, S. Gluzman
One of the most often used methods of summing divergent series in physics is the Borel-type summation with control parameters improving convergence, which are defined by some optimization conditions. The well known annoying problem in this procedure is the occurrence of multiple solutions for control parameters. We suggest a method for resolving this problem, based on the minimization of cost functional. Control parameters can be introduced by employing the Borel–Leroy or Mittag–Leffler transforms. Also, two novel transformations are proposed using fractional integrals and fractional derivatives. New cost functionals are advanced, based on lasso and ridge selection criteria, and their performance is studied for a number of models. The developed method is shown to provide good accuracy for the calculated quantities.
{"title":"Resolving the problem of multiple control parameters in optimized Borel-type summation","authors":"V. I. Yukalov, S. Gluzman","doi":"10.1007/s10910-024-01669-7","DOIUrl":"https://doi.org/10.1007/s10910-024-01669-7","url":null,"abstract":"<p>One of the most often used methods of summing divergent series in physics is the Borel-type summation with control parameters improving convergence, which are defined by some optimization conditions. The well known annoying problem in this procedure is the occurrence of multiple solutions for control parameters. We suggest a method for resolving this problem, based on the minimization of cost functional. Control parameters can be introduced by employing the Borel–Leroy or Mittag–Leffler transforms. Also, two novel transformations are proposed using fractional integrals and fractional derivatives. New cost functionals are advanced, based on lasso and ridge selection criteria, and their performance is studied for a number of models. The developed method is shown to provide good accuracy for the calculated quantities.</p>","PeriodicalId":648,"journal":{"name":"Journal of Mathematical Chemistry","volume":"12 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-08-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142179955","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-26DOI: 10.1007/s10910-024-01672-y
Macarena Boix, Begoña Cantó, Maria T. Gassó
This paper considers a distillation column used in heavy crude oil separation where pairings exhibit negative Niederlinski Index values, potentially leading to system instability. In this study, we address this issue by constructing a Relative Gain Array matrix from a transfer matrix of order 3. We employ mathematical techniques to steer the system towards stability. Through subtle modifications to matrix entries, we achieve stable configurations.
{"title":"Stability of a reactor with Niederlinski criterion using RGA matrices","authors":"Macarena Boix, Begoña Cantó, Maria T. Gassó","doi":"10.1007/s10910-024-01672-y","DOIUrl":"https://doi.org/10.1007/s10910-024-01672-y","url":null,"abstract":"<p>This paper considers a distillation column used in heavy crude oil separation where pairings exhibit negative Niederlinski Index values, potentially leading to system instability. In this study, we address this issue by constructing a Relative Gain Array matrix from a transfer matrix of order 3. We employ mathematical techniques to steer the system towards stability. Through subtle modifications to matrix entries, we achieve stable configurations.</p>","PeriodicalId":648,"journal":{"name":"Journal of Mathematical Chemistry","volume":"48 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-08-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142179954","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-06DOI: 10.1007/s10910-024-01653-1
Ying Yang, Jing Guo
In this paper, we develop a stochastic multi-molecule chemical reaction model with reaction rate perturbed by log-normal (Ornstein-Uhlenbeck) process in order to consider the effects of random factors on chemical reaction dynamics. Firstly, we prove the existence and uniqueness of the global positive solution for the stochastic model. In addition, we obtain the conditions under which the corresponding stochastic system exist a stationary distribution. Then, we derive a sufficient condition to end the reaction. Furthermore, the stochastic system has been transformed into a linearized system, by solving (Fokker-Planck) equation, we obtain the exact expression of the density function around the quasi-equilibrium of this system. Finally, we draw a conclusion that the dynamical behaviors of the stochastic system will be affected by random factor, (Ornstein-Uhlenbeck) process respectively
{"title":"Dynamical behaviors of a stochastic multi-molecule biochemical reaction model with Ornstein-Uhlenbeck process","authors":"Ying Yang, Jing Guo","doi":"10.1007/s10910-024-01653-1","DOIUrl":"https://doi.org/10.1007/s10910-024-01653-1","url":null,"abstract":"<p>In this paper, we develop a stochastic multi-molecule chemical reaction model with reaction rate perturbed by log-normal <span>(Ornstein-Uhlenbeck)</span> process in order to consider the effects of random factors on chemical reaction dynamics. Firstly, we prove the existence and uniqueness of the global positive solution for the stochastic model. In addition, we obtain the conditions under which the corresponding stochastic system exist a stationary distribution. Then, we derive a sufficient condition to end the reaction. Furthermore, the stochastic system has been transformed into a linearized system, by solving <span>(Fokker-Planck)</span> equation, we obtain the exact expression of the density function around the quasi-equilibrium of this system. Finally, we draw a conclusion that the dynamical behaviors of the stochastic system will be affected by random factor, <span>(Ornstein-Uhlenbeck)</span> process respectively</p>","PeriodicalId":648,"journal":{"name":"Journal of Mathematical Chemistry","volume":"57 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-08-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141931547","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-02DOI: 10.1007/s10910-024-01659-9
Saurav Mishra, Brijesh Kumar Pandey, Jyoti Gupta
Molecular interactions aid in our understanding of how proteins function and behave. As they can help us predict the biological functions of unknown proteins in living organisms in this work, DNA nucleobases are studied, which can assist us in characterizing protein complexes, cellular pathways, and functional modules. Density functional theory examines how different gold nanoparticles interact with DNA nucleobase monomers (DFT). At B3LYP, the 6-311-G basis set was used to optimize the molecular geometries of various nucleobases. At LANL2DZ as the basis set, molecular geometries of diverse gold nanoparticles are optimized. At standard pressure and temperature, binding energy, interaction energy, and Bandgap were estimated along with its IR and UV spectrum were studied. Our simulation results clearly show that the hydrogen bondings are intensified and more likely to occur as the size of the nucleobases and gold nanoparticles increases. Hydrogen bonding is also essential for the delivery of medications and the sequencing of genes in molecules. In our computational investigations, the interaction between different DNA nucleobases and gold nanoparticles is examined to find out how other nucleobases are affected by gold nanoparticles. The interaction between gold nanoparticles and diverse nucleobases is investigated to understand the behavior of nanoparticles with different nucleobases. The molecule composed of six gold atoms was discovered to be the most stable of all the optimized gold compounds. Our computational results can be explained by the polarization of gold molecules and their electronic energy.
分子相互作用有助于我们了解蛋白质的功能和行为。由于分子相互作用有助于我们预测生物体内未知蛋白质的生物功能,因此本研究对 DNA 核碱基进行了研究,从而帮助我们确定蛋白质复合物、细胞通路和功能模块的特征。密度泛函理论研究了不同的金纳米粒子如何与 DNA 核碱基单体相互作用(DFT)。在 B3LYP 中,6-311-G 基集用于优化各种核碱基的分子几何结构。以 LANL2DZ 为基础集,优化了各种金纳米粒子的分子几何形状。在标准压力和温度下,对结合能、相互作用能和带隙进行了估算,并对其红外和紫外光谱进行了研究。我们的模拟结果清楚地表明,随着核碱基和金纳米粒子尺寸的增大,氢键作用会加强,也更容易发生。氢键对于分子中的药物输送和基因测序也至关重要。在我们的计算研究中,我们研究了不同 DNA 核碱基与金纳米粒子之间的相互作用,以找出金纳米粒子对其他核碱基的影响。我们研究了金纳米粒子与不同核碱基之间的相互作用,以了解纳米粒子与不同核碱基的行为。研究发现,由六个金原子组成的分子是所有优化金化合物中最稳定的。我们的计算结果可以用金分子的极化及其电子能量来解释。
{"title":"Advancing understanding of molecular interactions: computational studies on DNA nucleobases and gold nanoparticles using density functional theory","authors":"Saurav Mishra, Brijesh Kumar Pandey, Jyoti Gupta","doi":"10.1007/s10910-024-01659-9","DOIUrl":"https://doi.org/10.1007/s10910-024-01659-9","url":null,"abstract":"<p>Molecular interactions aid in our understanding of how proteins function and behave. As they can help us predict the biological functions of unknown proteins in living organisms in this work, DNA nucleobases are studied, which can assist us in characterizing protein complexes, cellular pathways, and functional modules. Density functional theory examines how different gold nanoparticles interact with DNA nucleobase monomers (DFT). At B3LYP, the 6-311-G basis set was used to optimize the molecular geometries of various nucleobases. At LANL2DZ as the basis set, molecular geometries of diverse gold nanoparticles are optimized. At standard pressure and temperature, binding energy, interaction energy, and Bandgap were estimated along with its IR and UV spectrum were studied. Our simulation results clearly show that the hydrogen bondings are intensified and more likely to occur as the size of the nucleobases and gold nanoparticles increases. Hydrogen bonding is also essential for the delivery of medications and the sequencing of genes in molecules. In our computational investigations, the interaction between different DNA nucleobases and gold nanoparticles is examined to find out how other nucleobases are affected by gold nanoparticles. The interaction between gold nanoparticles and diverse nucleobases is investigated to understand the behavior of nanoparticles with different nucleobases. The molecule composed of six gold atoms was discovered to be the most stable of all the optimized gold compounds. Our computational results can be explained by the polarization of gold molecules and their electronic energy.</p>","PeriodicalId":648,"journal":{"name":"Journal of Mathematical Chemistry","volume":"50 1","pages":""},"PeriodicalIF":1.7,"publicationDate":"2024-08-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141887189","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}