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Condensed-to-bond dual descriptor for the analysis of electron density rearrangement in π-conjugated compounds 用于分析π共轭化合物中电子密度重排的缩合-键双描述子
IF 2 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-05-10 DOI: 10.1007/s10910-025-01730-z
Ricardo Pino–Rios

This study proposes the application of the bond dual descriptor, computed using finite difference approximation, to investigate the electron density reorganization in π-conjugated compounds upon nucleophilic/electrophilic attack. Compared to the traditional bond Fukui function analysis, this descriptor offers a simpler approach, reducing the complexity of potential rearrangement scenarios in half and simplifying the interpretation. A series of ethylene derivatives have been tested allowing to explain the activation of the double bond in ethylene derivatives, the rearrangement of the electron density and its reduction in activation energies. In addition, it is shown that it is possible to explain the reactivity on Michael acceptors, the rearrangement of cis-1,3,5-hexatriene to form 1,3-cyclohexadiene and the preference of C60 to react through its [6,6] over [5,6] bonds. The bond dual descriptor complements the atomic dual descriptor, enabling a comprehensive analysis of the chemical reactivity of π-conjugated compounds.

本研究提出应用有限差分近似计算的键对偶描述子来研究亲核/亲电攻击下π共轭化合物的电子密度重组。与传统的键福井函数分析相比,该描述符提供了一种更简单的方法,将潜在重排场景的复杂性降低了一半,简化了解释。对一系列乙烯衍生物进行了测试,以解释乙烯衍生物中双键的活化,电子密度的重排及其活化能的降低。此外,研究表明可以解释Michael受体上的反应性,顺式-1,3,5-己二烯重排形成1,3-环己二烯,以及C60通过其[6,6]键而不是[5,6]键反应的偏好。键对偶描述子是对原子对偶描述子的补充,可以对π共轭化合物的化学反应性进行综合分析。
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引用次数: 0
To a mechanical model of synthetic catch-bonds 合成捕获键的机械模型
IF 2 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-05-08 DOI: 10.1007/s10910-025-01731-y
Wolfgang Quapp, Josep Maria Bofill, Kerim C. Dansuk, Sinan Keten

We support a preliminary determination of the catch-bond character of a mechanical–chemical toy model using a tweezers construction with some modifications. We discuss a theoretical analysis of the problem using Newton trajectories. We propose a two-dimensional potential energy surfaces for this model. We discuss the slip, ideal and catch-bonds for this model using the previous potential parts of Dansuk and Keten (Matter 1:911, 2019). Chemical examples of the ansatz are allosteric reactions, especially FimH proteins. We note again that Newton trajectories provide the theoretical background of mechanochemistry. Construction of a potential energy surface and use of Newton trajectories by Wolfram Mathematica. Calculation of real catch bond behavior. We get for a tweezers model the catch bond behavior.

Two barriers under external force, F. The catch-bond barrier increases.

我们支持使用镊子结构进行一些修改的机械-化学玩具模型的捕获键特性的初步确定。我们用牛顿轨迹讨论了这个问题的理论分析。我们提出了该模型的二维势能面。我们使用Dansuk和Keten的先前潜在部分(Matter 1:911, 2019)讨论了该模型的滑动、理想和捕获键。化学反应的例子是变构反应,尤其是FimH蛋白。我们再次注意到,牛顿轨迹提供了力学化学的理论背景。Wolfram Mathematica的势能面构造和牛顿轨迹的使用。实际捕获键行为的计算。我们得到了一个镊子模型的捕获键行为。两个障碍在外力作用下,捕获键障碍增大。
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引用次数: 0
Closed-form representations of the Coulomb integral over hydrogenic orbitals 氢轨道上库仑积分的封闭形式表示
IF 1.7 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-05-07 DOI: 10.1007/s10910-025-01734-9
Balakrishnan Viswanathan, Darien DeWolf

The theory of atomic structure is conceptually built on hydrogen-like orbitals and computed using Slater or Gaussian orbitals, owing to the relative difficulty of computing integrals concerning the hydrogenic orbitals. The optimal set of hydrogenic orbitals in an atom is obtained by minimizing the energy with respect to the orbitals. The Coulomb integral is difficult to compute due to the inverse distance relationship. In this paper, we evaluate the Coulomb integral and its derivative using two expressions for the inverse distance: the Laplace expression and the Legendre expression. The two expressions for inverse distance are similar and yield different integral forms. The Laplace expression yields the Coulomb integral as a sum of hypergeometric functions while the Legendre expression yields a compact polynomial form. The derivative of the Coulomb integral (computed using both forms) with respect to the decay constant is also provided.

由于计算氢轨道的积分相对困难,原子结构理论在概念上建立在类氢轨道上,并使用斯莱特轨道或高斯轨道进行计算。一个原子中最优的氢轨道集是通过最小化相对于轨道的能量得到的。由于距离的反比关系,库仑积分很难计算。本文用拉普拉斯表达式和勒让德表达式求出了逆距离的库仑积分及其导数。逆距离的两个表达式相似,但产生不同的积分形式。拉普拉斯表达式得到的库仑积分是超几何函数的和,而勒让德表达式得到的是紧多项式形式。还提供了库仑积分(使用两种形式计算)对衰减常数的导数。
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引用次数: 0
Low-order efficient Adams–Bashforth–Moulton methods for first-order IVPs with oscillating solutions 具有振荡解的一阶ivp的低阶有效Adams-Bashforth-Moulton方法
IF 1.7 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-05-06 DOI: 10.1007/s10910-025-01727-8
Chia-Liang Lin, Theodore E. Simos

The methodology for calculating the phase-lag and amplification-factor for both explicit and implicit multistep methods for first-order differential equations was recently developed by one of the authors. The objective of this study is to develop low-order Adams–Bashforth–Moulton predictor–corrector algorithms that eradicate phase-lag, amplification-factor. The stability regions of the newly established methodologies will also be highlighted. Furthermore, we will examine our results from numerical experiments employing the newly developed approaches.

一阶微分方程的显式多步法和隐式多步法的相位滞后和放大因子的计算方法是最近由一位作者提出的。本研究的目的是开发低阶Adams-Bashforth-Moulton预测校正算法,以消除相位滞后、放大因子。还将强调新确立的方法的稳定区域。此外,我们将采用新开发的方法检查我们的数值实验结果。
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引用次数: 0
An efficient approximation algorithm for the nonlinear reaction: diffusion equations in an electro catalytic thin film models using Hosoya polynomials 非线性反应扩散方程的有效逼近算法:电催化薄膜模型的细谷多项式
IF 1.7 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-04-26 DOI: 10.1007/s10910-025-01728-7
M. Bhuvaneswari, V. Vinoba, G. Hariharan

The paper discusses a mathematical model for non-Michaelis–Menten kinetics, which involves a substrate forming a complex with the immobilized catalyst. A new Hosoya polynomial approximation method (HPAM) is applied for solving the reaction–diffusion equations. Analytical expressions are established to the nonlinear reaction–diffusion equation arising in electro catalytic thin film with an arbitrary shape models using the Hosoya polynomials. The main idea of the proposed research work is that the nonlinear reaction–diffusion problems are converted into a system of algebraic equations using the Hosoya polynomials. Analytical expressions for substrate concentration profiles are derived in closed and simplified forms for various geometries (planar, cylindrical, and spherical), along with the corresponding steady-state amperometric current response. The proposed results are validated with the other available results. Moreover, the utility of HPAM is investigated to be simple, straight forward, efficient and flexible. Also, the paper examines how different parameters influence the substrate concentration in the above models.

本文讨论了非米切里斯-门腾动力学的数学模型,该模型涉及底物与固定化催化剂形成配合物。提出了一种新的细谷多项式近似法(HPAM)来求解反应扩散方程。利用细谷多项式建立了任意形状电催化薄膜中非线性反应扩散方程的解析表达式。提出的研究工作的主要思想是将非线性反应扩散问题转化为使用细谷多项式的代数方程组。对于各种几何形状(平面、圆柱形和球形),以及相应的稳态安培电流响应,以封闭和简化的形式导出了衬底浓度曲线的解析表达式。所提结果与其他可用结果进行了验证。此外,还研究了HPAM具有简单、直接、高效、灵活等优点。此外,本文还考察了不同参数对上述模型中底物浓度的影响。
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引用次数: 0
Correction to: Linear forms in logarithms and the mathematical method of diophantine equations: applications in chemistry and physics 修正:对数的线性形式和丢番图方程的数学方法:在化学和物理中的应用
IF 1.7 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-04-22 DOI: 10.1007/s10910-025-01722-z
Pagdame Tiebekabe, Ismaïla Diouf
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引用次数: 0
A simplified a posteriori error analysis of a second-order difference scheme for a singularly perturbed convection-diffusion problem 奇异摄动对流扩散问题二阶差分格式的简化后验误差分析
IF 1.7 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-04-18 DOI: 10.1007/s10910-025-01729-6
Jian Huang, Zhongdi Cen, Aimin Xu

In this paper a numerical method on a posteriori mesh is presented to solve a second-order singularly perturbed convection-diffusion equation. A second-order three-point difference method is used to discretize the singularly perturbed convection-diffusion equation. A posteriori error analysis involving simple calculations with fewer proof techniques is developed for the second-order three-point difference method on an arbitrary mesh. A solution-adaptive algorithm based on a posteriori error analysis is designed to generate a posteriori mesh and the approximation solution. Numerical experiments verify the second-order uniform convergence of this method.

本文提出了一种二阶奇摄动对流扩散方程的后验网格数值解法。采用二阶三点差分法对奇摄动对流扩散方程进行离散化。针对任意网格上的二阶三点差分法,提出了一种计算简单、证明技术较少的后验误差分析方法。设计了一种基于后验误差分析的解自适应算法来生成后验网格和逼近解。数值实验验证了该方法的二阶一致收敛性。
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引用次数: 0
Combinatorics of colorings of Dűrer graph, Dűrer solid in Melencolia I, their heptagonal analogues and antiprisms for all irreducible representations: chirality, dynamics, NMR spectra and enumerations 所有不可约表示的Dűrer图,Dűrer固体Melencolia I及其七面类似物和反棱镜的着色组合:手性,动力学,NMR光谱和枚举
IF 1.7 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-04-16 DOI: 10.1007/s10910-025-01720-1
Krishnan Balasubramanian

The Dűrer Solid has an art and mathematical history ever since it appeared in Dűrer’s 1514 copper engraving, Melencolia I. The associated truncated triangular trapezohedron is an intriguing structure owing to the symmetry, chirality concepts and combinatorial properties. The heptahedral version corresponds to the generalized Petersen’s graph G(7,2). It is shown that the heptagonal antiprism exhibits interesting combinatorial and chirality properties. The heptagonal bipyramid boron complex has been studied recently, and thus the developed techniques were applied to the multiple-quantum NMR of this complex. These graphs and solids serve as representations in dynamic stereochemistry of fluxional molecules as well as in material and molecular science. We consider symmetry-driven combinatorial-group theory through generating functions for the face, edge and vertex colorings of the title graphs and solids for all irreducible representations of the respective symmetry groups. We demonstrate of our computational-combinatorics techniques with tables of combinatorial numbers for the various colorings of these graphs for all irreducible representations. The chirality of the colorings can be directly inferred from the combinatorial enumerations. Applications to the 10B and 11B MQ-NMR and nuclear spin statistics of the heptagonal bipyramid complex are considered.

Graphical abstract

自从Dűrer固体出现在Dűrer的1514年铜雕Melencolia i中以来,它就有了一段艺术和数学历史。由于对称、手性概念和组合特性,相关的截尾三角形四面体是一个有趣的结构。七面体形式对应于广义Petersen图G(7,2)。结果表明,七方反棱镜具有有趣的组合性和手性。近年来,人们对七方双锥体硼配合物进行了研究,并将所建立的技术应用于该配合物的多量子核磁共振。这些图形和固体作为流动分子的动态立体化学以及材料和分子科学的表示。我们通过为标题图和实体的所有不可约表示的面、边和顶点着色生成函数来考虑对称驱动的组合群理论。我们用组合数表展示了我们的计算组合技术,对于所有不可约表示,这些图的各种颜色。着色的手性可以直接从组合枚举中推断出来。应用于10B和11B的MQ-NMR和七方双金字塔配合物的核自旋统计。图形抽象
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引用次数: 0
Simulation of optimal linear control for stabilizing chaotic behavior in a chemical reaction model 稳定化学反应模型混沌行为的最优线性控制仿真
IF 1.7 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-04-16 DOI: 10.1007/s10910-025-01723-y
Henrique Antonio Mendonça Faria, Jorge Manuel Vieira Capela, Fabio Roberto Chavarette

Complex dynamical systems, such as multicomponent chemical reactions, can exhibit chaotic behaviour, posing challenges for process control and optimisation. The pursuit of effective control methodologies to stabilise chaotic reaction systems constitutes a broad field of research and application. This study proposes the application of optimal linear control to mitigate chaotic behaviour in a model of four-component chemical reactions within a continuous stirred-tank reactor (CSTR). The methodology involves representing the reaction system through differential equations and minimising the Hamilton–Jacobi-Bellman functional equation via a linear feedback controller based on a Lyapunov function. Numerical simulations validate the methodology’s efficacy, demonstrating the controller’s capacity to transition the system of equations from a chaotic state to a stable periodic regime. The results highlight the potential of optimal linear control for optimising the model of complex chemical processes, thereby opening possibilities for technological applications in specific scenarios. Optimal linear control has proven effective in stabilising the model of the reaction system, presenting itself as a promising tool for the design of industrial processes involving continuous flow reactors. In these reactors, precise control of concentrations is crucial to ensure process quality and safety.

复杂的动力系统,如多组分化学反应,可能表现出混乱的行为,对过程控制和优化提出了挑战。追求有效的控制方法来稳定混沌反应系统构成了一个广泛的研究和应用领域。本研究提出应用最优线性控制来减轻连续搅拌槽反应器(CSTR)中四组分化学反应模型的混沌行为。该方法包括通过微分方程表示反应系统,并通过基于Lyapunov函数的线性反馈控制器最小化Hamilton-Jacobi-Bellman泛函方程。数值模拟验证了该方法的有效性,证明了控制器将方程组从混沌状态转换为稳定周期状态的能力。结果突出了优化复杂化学过程模型的最优线性控制的潜力,从而为特定场景中的技术应用开辟了可能性。最优线性控制已被证明在稳定反应系统模型方面是有效的,为涉及连续流反应器的工业过程设计提供了一个有前途的工具。在这些反应器中,精确控制浓度对于确保工艺质量和安全至关重要。
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引用次数: 0
Combinatorial S-function method for relativistic spinor states of 5g-row dimers: (E-121)2 to (E-137)2 g行二聚体(E-121)2 ~ (E-137)2相对论旋量态的组合s函数方法
IF 1.7 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-04-15 DOI: 10.1007/s10910-025-01715-y
Krishnan Balasubramanian

The electronic states arising from the 5g-row of the periodic table are far less explored compared to other lighter elements in the periodic table. Relativistic effects are extremely large for the 5g-row elements (E-121 to E-138) due to a large nuclear charge approaching the inverse of the fine structure constant. The large relativistic effects result in a molecular spinor nature of the electronic states leading to a substantial mixing of electronic states with different spin multiplicities and differing spatial symmetries. Hence we present the combinatorial enumeration of ω–ω states arising for the 5g-row dimers by employing multinomially-driven symmetric function methods. The combinatorial techniques enumerate all possible ω–ω states originating from the relativistic 2-component molecular spinors for all the 5g-row dimers. There is a combinatorial explosion of electronic states, for example, a 5g-mid-row dimer with 18 electrons exhibits (text{4,537,567,650}) terms in the S-functions. The S-functions for the 5g-row dimers are constructed, and from the S-function terms, those that comply with the Pauli exclusion principle result in a large number of relativistic ω–ω states for the 5g-row dimers. We have constructed the combinatorial tables for the relativistic ω–ω states of several 5g-row dimers subsequent to stipulating several conditions imposed on the level of electron excitations so that the combinatorics is manageable. Furthermore we invoke the electron–hole equivalence to mirror the ω–ω states for the remaining dimers of the 5g-row to enumerate them. Consequently, the developed technique enumerates the ω–ω states arising from up to 18 open-shell states without any restrictions making it applicable to numerous ω–ω states with varied quantum numbers.

与元素周期表中其他较轻的元素相比,人们对元素周期表第5g行产生的电子态的探索要少得多。5g行元素(E-121至E-138)的相对论效应非常大,因为它的核电荷接近精细结构常数的倒数。大的相对论效应导致电子态具有分子旋量性质,从而导致具有不同自旋多重度和不同空间对称性的电子态的大量混合。因此,我们采用多项驱动对称函数方法,给出了5g行二聚体产生的ω -ω态的组合枚举。组合技术列举了所有5g行二聚体的相对论性双组分分子旋量产生的所有可能的ω -ω态。存在电子态的组合爆炸,例如,具有18个电子的5g中排二聚体在s函数中显示(text{4,537,567,650})项。构造了5g行二聚体的s函数,从s函数项中,符合泡利不相容原理的s函数项导致了5g行二聚体的大量相对论性ω -ω态。我们构造了几种5g行二聚体的相对论ω -ω态的组合表,并规定了施加在电子激发水平上的几个条件,使组合学易于管理。此外,我们引用电子-空穴等效来反映5g-row的其余二聚体的ω -ω态以枚举它们。因此,所开发的技术列举了多达18个开壳态产生的ω -ω态,没有任何限制,使其适用于具有不同量子数的众多ω -ω态。
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引用次数: 0
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Journal of Mathematical Chemistry
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