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Study of oxide-based nano cluster X3O4 (X = Ti, Fe and Zn) for biomedical applications: a CDFT approach 用于生物医学应用的氧化物基纳米团簇 X3O4(X = Ti、Fe 和 Zn)研究:CDFT 方法
IF 1.7 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-02-04 DOI: 10.1007/s10910-023-01569-2
Shayeri Das, Prabhat Ranjan, Tanmoy Chakraborty

In recent years, oxide-based nano clusters have shown some significant applications in medical sciences, bio sensing, catalysis, and energy storage. Here we have reported the computational study of oxide-based nano clusters X3O4 (X = Ti, Fe, Zn) by means of Conceptual Density Functional Theory (CDFT) method. Geometry optimization and frequency computation of these clusters are carried out using the functional B3LYP/LANL2DZ in the DFT framework. Highest Occupied Molecular Orbital (HOMO)–Lowest Unoccupied Molecular Orbital (LUMO) of the clusters are found between 2.019 and 3.570 eV. The global CDFT descriptors viz. hardness, softness, electronegativity, electrophiliicty index and dipole moment are calculated. Result shows that Zn3O4 has the maximum stability whereas Fe3O4 is highly reactive in nature. Electronegatiivty and electrophilicity index of these clusters decrease from Fe3O4 to Zn3O4 to Ti3O4. Analyses are conducted for the optical characteristics of X3O4 nano clusters, comprising their refractive index, dielectric constant, optical electronegativity and IR activity. Refractive index, dielectric constant and range of harmonic frequency increase from Zn3O4 to Fe3O4 via Ti3O4. The estimated bond length, HOMO–LUMO energy gap, refractive index and IR activity of the nano clusters are in agreement with the reported experimental and theoretical results. The physico-chemical properties of X3O4 nano clusters indicate their potential applications in biomedical sciences especialy for the treatment of cancer cells.

摘要 近年来,氧化物基纳米团簇在医疗科学、生物传感、催化和能量存储等领域得到了重要应用。在此,我们通过概念密度泛函理论(CDFT)方法对氧化物基纳米团簇 X3O4(X = Ti、Fe、Zn)进行了计算研究。在 DFT 框架内使用 B3LYP/LANL2DZ 函数对这些团簇进行了几何优化和频率计算。发现簇的最高占有分子轨道(HOMO)-最低未占有分子轨道(LUMO)在 2.019 至 3.570 eV 之间。计算了全局 CDFT 描述因子,即硬度、软度、电负性、嗜电指数和偶极矩。结果表明,Zn3O4 具有最高的稳定性,而 Fe3O4 则具有高反应性。从 Fe3O4 到 Zn3O4 再到 Ti3O4,这些团簇的电负性和亲电性指数都在下降。对 X3O4 纳米团簇的光学特性进行了分析,包括折射率、介电常数、光学电负性和红外活性。从 Zn3O4 到 Fe3O4 再到 Ti3O4,折射率、介电常数和谐波频率范围都在增加。纳米团簇的估计键长、HOMO-LUMO 能隙、折射率和红外活性与所报告的实验和理论结果一致。X3O4 纳米团簇的物理化学特性表明,它们在生物医学科学中具有潜在的应用价值,尤其是在治疗癌细胞方面。
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引用次数: 0
Generalized transmission neighbor indices: graph connectivity analysis and its chemical relevance 广义传递邻接指数:图连接性分析及其化学相关性
IF 1.7 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-02-03 DOI: 10.1007/s10910-023-01567-4
D. Vyshnavi, B. Chaluvaraju

In this article, we introduce a novel concept called Generalized Transmission Neighbor Indices, building upon established transmission indices. The primary focus is on two variants of these indices, denoted as (TN^1_{(a,b)}(G)) and (TN^2_{(a,b)}(G)), which offer distinct insights into graph connectivity. The first index, (TN^1_{(a,b)}(G)), quantifies the sum of powered vertex neighbor transmissions for connected vertices, while the second, (TN^2_{(a,b)}(G)), calculates the product of powered vertex neighbor transmissions among connected vertices. Our investigation delves into the diverse values of parameters a and b, shedding light on the relationships between these indices and established transmission neighbor-based metrics. Bounds have been computed, and we have also explored the chemical relevance (Quantitative Structure–Property Relationship) in the context of linear monocarboxylic acids.

在本文中,我们在已有传输指数的基础上引入了一个新概念,即广义传输邻接指数(Generalized Transmission Neighbor Indices)。主要重点是这些指数的两个变体,分别表示为 (TN^1_{(a,b)}(G)) 和 (TN^2_{(a,b)}(G)) ,它们提供了对图连接性的独特见解。第一个指数(TN^1_{(a,b)}(G))量化了连接顶点的有动力顶点邻居传输总和,而第二个指数(TN^2_{(a,b)}(G))计算了连接顶点之间有动力顶点邻居传输的乘积。我们的研究深入探讨了参数 a 和 b 的不同值,揭示了这些指数与基于传输邻居的既定度量之间的关系。我们计算了界限,还探讨了线性单羧酸的化学相关性(定量结构-属性关系)。
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引用次数: 0
Laws of physical chemistry: a potential tool for generating some series and to evaluate their sum 物理化学定律:生成某些数列并评估其总和的潜在工具
IF 1.7 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-01-30 DOI: 10.1007/s10910-023-01572-7
Paulami Ghosh, Nabakumar Bera

Laws of physical chemistry such as quantum mechanics, laws of chemical kinetics, and thermodynamics have been employed as a potential tool to generate some converging sum rules. Special emphasis has been given to Rayleigh–Schrödinger perturbation theory and the use of delta function potential to generate a number of sum rules.

物理化学定律,如量子力学、化学动力学定律和热力学,已被用作生成一些收敛和规则的潜在工具。其中特别强调了瑞利-薛定谔扰动理论和利用三角函数势能生成一些和则。
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引用次数: 0
Numerical simulation of the time fractional Gray-Scott model on 2D space domains using radial basis functions 使用径向基函数对二维空间域上的时间分数格雷-斯科特模型进行数值模拟
IF 1.7 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-01-27 DOI: 10.1007/s10910-023-01571-8
Harshad Sakariya, Sushil Kumar

The Gray-Scott system describes one of the crucial components of the reaction-diffusion system. Its mathematical model has a couple of non-linear partial differential equations that are challenging to solve numerically. The present study is concerned with the numerical solution of the time-fractional Gray-Scott model in arbitrary-shaped domains utilizing the finite difference approximation and radial basis functions (RBFs) based collocation method for time and space directions, respectively. The patterns are created in the domains that denote the leftover chemical component concentrations at a specific time in the system. We also witness the effects of the time-fractional order ((alpha )) and diffusion constants ((K_u) and (K_v)) on the model. This study asserts that chemical reactions between two substances manifest chaotic and unpredictable behavior. Investigating the influence of time-fractional order introduces an intriguing avenue for exploring novel patterns and behaviors within this context. Furthermore, the proposed algorithm can be used to solve the model and generate novel patterns by altering the parameter values or geometric configurations in any space dimension.

格雷-斯科特系统描述了反应-扩散系统的一个重要组成部分。其数学模型包含几个非线性偏微分方程,数值求解具有挑战性。本研究采用有限差分近似法和基于径向基函数(RBFs)的时间和空间配位法,分别对任意形状域中的时间-分数 Gray-Scott 模型进行数值求解。在域中创建的模式表示系统中特定时间的剩余化学成分浓度。我们还见证了时间分阶((alpha ))和扩散常数((K_u) 和(K_v))对模型的影响。这项研究认为,两种物质之间的化学反应表现出混沌和不可预测的行为。研究时间分数阶的影响为在此背景下探索新的模式和行为提供了一个有趣的途径。此外,所提出的算法可用于求解模型,并通过改变任意空间维度的参数值或几何配置生成新模式。
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引用次数: 0
Hess’ law requires modified mathematical rules for information entropy of interdependent chemical reactions 赫斯定律要求对相互依存的化学反应的信息熵数学规则进行修改
IF 1.7 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-01-23 DOI: 10.1007/s10910-023-01566-5
Denis Sh. Sabirov, Alexandra D. Zimina, Alina A. Tukhbatullina

In mathematical chemistry, a chemical reaction is represented as a transformation of one molecular ensemble into another one, and information entropy is used for quantitative describing changes in the molecular complexity. The information entropy of a chemical reaction is the difference between the values of the ensembles of products and reagents. As is known, the information entropy of molecular ensemble depends on the information entropies of individual molecules and, additionally, on the cooperative entropy, an emergent parameter that reflects uniting the molecules into the ensemble. Accounting this parameter determines the peculiarities of calculating the information entropy for interdependent chemical reactions. In the present study, we have derived a general formula that connects the information entropy of the complex chemical process with the parameters of its elementary stages and demonstrated its work on typical examples of successive, parallel, and conjugated chemical reactions. Notably, the view of the derived formula differs from the equations used when Hess’ law is applied to the thermodynamic parameters of interdependent reactions. The only case when the Hess’ law has the same analytical expression for both information-entropy and thermodynamic parameters is the isomegethic set of chemical reactions, viz. the system of the successive reactions, in which the size of the molecular ensemble remains constant.

在数学化学中,化学反应表现为一种分子集合向另一种分子集合的转化,而信息熵则用于定量描述分子复杂性的变化。化学反应的信息熵是生成物和试剂集合值之间的差值。众所周知,分子集合的信息熵取决于单个分子的信息熵,此外,还取决于合作熵。计算这一参数决定了计算相互依存化学反应的信息熵的特殊性。在本研究中,我们推导出了将复杂化学过程的信息熵与其基本阶段参数联系起来的一般公式,并在连续、平行和共轭化学反应的典型例子中证明了该公式的作用。值得注意的是,推导公式的观点不同于赫斯定律应用于相互依存反应的热力学参数时所使用的方程。赫斯定律对信息熵和热力学参数都有相同分析表达式的唯一情况是化学反应的同位组,即连续反应系统,其中分子集合的大小保持不变。
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引用次数: 0
Physicochemical significance of ChemDraw and Dragon computed parameters: correlation studies in the sets with aliphatic and aromatic substituents ChemDraw 和 Dragon 计算参数的物理化学意义:脂肪族和芳香族取代基组的相关研究
IF 1.7 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-01-18 DOI: 10.1007/s10910-023-01558-5
Anil Kumar Saxena, Ankit Kumar Gupta, Karanpreet Singh Bhatia

Quantitative Structure Activity Relationship (QSAR) requires the use of chemical descriptors which are either empirical or non-empirical. Although the ease of computation of computationally derived parameters such as given by ChemDraw software like CAA, CMA, CSEV and Dragon parameters like Au, Nc, Vs, TIC3, ATS2p etc. are easier to be used in the QSAR studies, but they still lack the biological interpretation as no prior knowledge of their physicochemical significance and their interrelationship is available. Therefore, the QSAR models developed using such parameters may be useful only in prediction of activity but are meaningless in terms of understanding the mode of action of the bioactive molecules. Thus, to fulfil this knowledge gap, and in continuation of our earlier work on physicochemical significance of topological parameters this study has been attempted to understand the empiricism of such computationally derived parameters in terms of their physicochemical significance. Here, we report that most of the ChemDraw and Dragon computed parameters are also best correlated with MR similar to topological parameters.

摘要 定量结构与活性关系(QSAR)需要使用经验或非经验的化学描述符。虽然计算得出的参数(如 ChemDraw 软件给出的 CAA、CMA、CSEV 等)和龙参数(如 Au、Nc、Vs、TIC3、ATS2p 等)易于用于 QSAR 研究,但由于事先不了解这些参数的物理化学意义及其相互关系,因此仍然缺乏生物学解释。因此,使用这些参数建立的 QSAR 模型可能只对预测活性有用,但对了解生物活性分子的作用模式却毫无意义。因此,为了填补这一知识空白,并延续我们早期关于拓扑参数理化意义的工作,本研究尝试从理化意义的角度来理解这些通过计算得出的参数的经验性。在此,我们报告说,ChemDraw 和 Dragon 计算得出的大多数参数与拓扑参数类似,也与磁共振具有最佳相关性。
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引用次数: 0
Inductive proof of Borchardt’s theorem 博尔哈特定理的归纳证明
IF 1.7 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-01-10 DOI: 10.1007/s10910-023-01561-w
Andy A. Chavez, Alec P. Adam, Paul W. Ayers, Ramón Alain Miranda-Quintana

We provide a (strong) inductive proof of Borchardt’s theorem for calculating the permanent of a Cauchy matrix via the determinants of auxiliary matrices. This result has implications for antisymmetric products of interacting geminals (APIG), and suggests that the restriction of the APIG coefficients to Cauchy form (typically called APr2G) is special in its tractability.

我们为通过辅助矩阵行列式计算考希矩阵常量的博尔查特定理提供了一个(强)归纳证明。这一结果对交互 geminals(APIG)的非对称积有影响,并表明将 APIG 系数限制为 Cauchy 形式(通常称为 APr2G)具有特殊的可操作性。
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引用次数: 0
An exceedingly effective and inexpensive two-step, fourteenth-order phase-fitting method for solving quantum chemical issues 解决量子化学问题的极为有效且成本低廉的两步十四阶相位拟合方法
IF 1.7 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-01-10 DOI: 10.1007/s10910-023-01560-x
Marina A. Medvedeva, T. E. Simos

In order to get rid of the phase-lag and its first, second, third, fourth, and fifth derivatives, a phase-fitting method might be applied. The new strategy, called the economical method, maximizes algebraic order (AOR) while minimizing function evaluations (FEvs). Equation PF5DPFN142SPS describes the unique method. An infinitely periodic P-Stable technique is suggested. The proposed method is applicable to numerous problems with periodic and/or oscillatory solutions. In quantum chemistry, this novel approach was used to address the challenging problem of Schrödinger-type coupled differential equations. It is an economic algorithm because each step of the new method only costs 5FEvs to carry out. This helps us to improve our existing condition significantly by achieving an AOR of 14.

为了消除相位滞后及其第一、第二、第三、第四和第五次导数,可以采用相位拟合方法。这种新策略被称为 "经济法",在最大化代数阶(AOR)的同时,最小化函数求值(FEvs)。公式 PF5DPFN142SPS 描述了这种独特的方法。提出了一种无限周期的 P-Stable 技术。所提出的方法适用于许多具有周期性和/或振荡解的问题。在量子化学中,这种新方法被用于解决薛定谔型耦合微分方程这一具有挑战性的问题。这是一种经济算法,因为新方法的每一步执行成本仅为 5FE。这有助于我们显著改善现有条件,使 AOR 达到 14。
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引用次数: 0
Slow invariant manifold assessment for efficient production of H2SO4 by SO2: a computational approach 利用二氧化硫高效生产 H2SO4 的慢速不变量流形评估:一种计算方法
IF 1.7 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-01-10 DOI: 10.1007/s10910-023-01565-6
Shuguang Li, Faisal Sultan, Muhammad Yaseen, Muhammad Shahzad, El-Sayed M. Sherif

Sulfur dioxide (SO2) belongs to the highly reactive group of gases familiar as “Oxides of Sulfur”. SO2 has lots of adverse effects on plants, respiratory system and many other environmental issues. Sulfur dioxide is a primary pollutant which is regulated worldwide, due to the combustion of fuel. Different approaches are adopted to economically control the SO2 in the environment which causes the production of sulfuric acid that is reflected in acid rain. The aim of this study is to investigate the invariant regions and solution pathways for the formation of H2SO4 in a multi-step reaction mechanism. The employed Model Reduction Techniques (MRTs) such as Spectral Quasi Equilibrium Manifold (SQEM) and Intrinsic Low Dimensional Manifold (ILDM) give the solution curves, which functions as a primary approximation to invariant manifold. It is achieved that each chemical specie can be assessed rather than taking the overall mechanism. The new discovery suggests that we could achieve the invariant regions for SO2 and H2SO4. SO2 emissions, along with emission norms, will be disclosed. The comparison of MRTs is depicted through tabular and graphical representations, while theoretical results are demonstrated through computer simulations using MATLAB.

二氧化硫(SO2)属于被称为 "硫的氧化物 "的高活性气体。二氧化硫对植物、呼吸系统和许多其他环境问题都有不利影响。二氧化硫是一种主要污染物,由于燃料燃烧而受到全球管制。为了经济地控制环境中的二氧化硫,人们采取了不同的方法,因为二氧化硫会导致硫酸的产生,而硫酸则反映在酸雨中。本研究旨在探究多步反应机制中 H2SO4 生成的不变区域和溶液路径。所采用的模型还原技术(MRT),如光谱准平衡流形(SQEM)和本征低维流形(ILDM),给出了溶液曲线,作为不变流形的主要近似值。这样就可以对每种化学物质进行评估,而不是从整体机制出发。新发现表明,我们可以实现二氧化硫和硫酸氢盐的不变区域。二氧化硫的排放以及排放标准将被公布。MRT 的比较将以表格和图形的形式展示,而理论结果将通过使用 MATLAB 进行计算机模拟来证明。
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引用次数: 0
Spectral approximation scheme for a hybrid, spin-density Kohn–Sham density-functional theory in an external (nonuniform) magnetic field and a collinear exchange-correlation energy 外部(非均匀)磁场和共线交换相关能下的混合自旋密度 Kohn-Sham 密度泛函理论的谱近似方案
IF 1.7 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-01-08 DOI: 10.1007/s10910-023-01557-6
M. Melgaard, V. J. J. Syrjanen

We provide a mathematical justification of a spectral approximation scheme known as spectral binning for the Kohn–Sham spin density-functional theory in the presence of an external (nonuniform) magnetic field and a collinear exchange-correlation energy term. We use an extended density-only formulation for modeling the magnetic system. No current densities enter the description in this formulation, but the particle density is split into different spin components. By restricting the exchange-correlation energy functional to be of a collinear LSDA form, we prove a series of results which enable us to mathematically justify the spectral binning scheme using the method of Gamma-convergence, in conjunction with auxiliary steps involving recasting the electrostatic potentials, justifying the spectral approximation by making a spectral decomposition of the Hamiltonian and “linearizing" the latter Hamiltonian.

摘要 我们为存在外部(非均匀)磁场和共线交换相关能量项的 Kohn-Sham 自旋密度函数理论提供了一种称为光谱分选的光谱近似方案的数学理由。我们使用扩展的纯密度公式来模拟磁性系统。在这个公式中,没有电流密度的描述,但粒子密度被分成不同的自旋成分。通过将交换相关能函数限制为共线 LSDA 形式,我们证明了一系列结果,这些结果使我们能够利用伽马收敛法,结合静电势重铸、通过对哈密尔顿进行谱分解和对后一个哈密尔顿进行 "线性化"等辅助步骤,从数学上证明谱分选方案的合理性。
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引用次数: 0
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Journal of Mathematical Chemistry
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