Pub Date : 2025-09-03DOI: 10.1007/s00044-025-03459-5
Olga V. Andreeva, Alexandra D. Voloshina, Anna P. Lyubina, Andrey A. Parfenov, Bulat F. Garifullin, Irina Yu. Strobykina, Mayya G. Belenok, Olga B. Babaeva, Vasily M. Babaev, Liliya F. Saifina, Vyacheslav E. Semenov, Vladimir E. Kataev
In this work, we designed and synthesized 12 triphenylphosphonium (TPP) conjugates of acetylenated nucleic bases (uracil, thymine) and their analogues (6-methyluracil, quinazoline-2,4-dione) and evaluated their in vitro cytotoxicity against 9 human cancer cell lines M-HeLa, HuTu 80, MCF-7, T 98 G, A 549, DU-145, SK-OV-3, PC-3, A-375 and two lines of normal human cells RPMI 1788 and WI-38. All synthesized TPP-conjugates showed high cytotoxicity (IC50 values in the range of 0.1–7.3 µM) against all used human cancer cell lines. The mechanisms of cytotoxic action were studied for the lead compounds 2c,d, 4c,d which exhibited very high cytotoxicity (IC50 = 0.2–0.3 μM) against PC-3 cancer cells. The flow cytometry method using Annexin V and propidium iodide (PI) has shown that the lead compounds cause apoptosis of PC-3 cells. With the help of flow cytometry using cationic carbocyanine dye JC-1, it was found that the lead compounds cause a significant dose-dependent decrease in the mitochondrial membrane potential of PC-3 cancer cells, that induces apoptosis along the mitochondrial pathway. Significant ROS production in PC-3 cells after their treatment with the lead compounds 2c,d was detected by flow cytometry using CellROX® Deep Red fluorogenic probe. Enzyme-linked immunosorbent assay (ELISA) found that the lead compounds activated apoptosis-initiating caspase-9 and blocked anti-apoptotic Bcl-2 protein in PC-3 cancer cells. This experimental fact was explained by molecular docking.
{"title":"In vitro cytotoxicity evaluation of triphenylphosphonium (TPP) conjugates of some acetylenated nucleic bases and their analogues","authors":"Olga V. Andreeva, Alexandra D. Voloshina, Anna P. Lyubina, Andrey A. Parfenov, Bulat F. Garifullin, Irina Yu. Strobykina, Mayya G. Belenok, Olga B. Babaeva, Vasily M. Babaev, Liliya F. Saifina, Vyacheslav E. Semenov, Vladimir E. Kataev","doi":"10.1007/s00044-025-03459-5","DOIUrl":"10.1007/s00044-025-03459-5","url":null,"abstract":"<div><p>In this work, we designed and synthesized 12 triphenylphosphonium (TPP) conjugates of acetylenated nucleic bases (uracil, thymine) and their analogues (6-methyluracil, quinazoline-2,4-dione) and evaluated their in vitro cytotoxicity against 9 human cancer cell lines M-HeLa, HuTu 80, MCF-7, T 98 G, A 549, DU-145, SK-OV-3, PC-3, A-375 and two lines of normal human cells RPMI 1788 and WI-38. All synthesized TPP-conjugates showed high cytotoxicity (IC<sub>50</sub> values in the range of 0.1–7.3 µM) against all used human cancer cell lines. The mechanisms of cytotoxic action were studied for the lead compounds <b>2c</b>,<b>d</b>, <b>4c</b>,<b>d</b> which exhibited very high cytotoxicity (IC<sub>50</sub> = 0.2–0.3 μM) against PC-3 cancer cells. The flow cytometry method using Annexin V and propidium iodide (PI) has shown that the lead compounds cause apoptosis of PC-3 cells. With the help of flow cytometry using cationic carbocyanine dye JC-1, it was found that the lead compounds cause a significant dose-dependent decrease in the mitochondrial membrane potential of PC-3 cancer cells, that induces apoptosis along the mitochondrial pathway. Significant ROS production in PC-3 cells after their treatment with the lead compounds <b>2c</b>,<b>d</b> was detected by flow cytometry using CellROX® Deep Red fluorogenic probe. Enzyme-linked immunosorbent assay (ELISA) found that the lead compounds activated apoptosis-initiating caspase-9 and blocked anti-apoptotic Bcl-2 protein in PC-3 cancer cells. This experimental fact was explained by molecular docking.</p><div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":699,"journal":{"name":"Medicinal Chemistry Research","volume":"34 9","pages":"1958 - 1973"},"PeriodicalIF":3.1,"publicationDate":"2025-09-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145028278","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-09-01DOI: 10.1007/s00044-025-03452-y
Ta Thi Thu Thuy, Do Thi Lan Huong, Duong Quang Huan, Nguyen Thi Hanh, Huynh Thi Ngoc Ni, Phan Hong Minh, Ninh The Son
Wedelia species (the Asteraceae family) are renowned for treating several inflammation-related diseases clinically, such as pertussis and pharyngitis. Plants of the genus contain diverse bioactive metabolites. The review comprehensively describes scientific investigations regarding Wedelia species, comprising phytochemical record, pharmacological value, toxicological evaluation, and nano- and semisynthetic preparations. Four online sources Web of Science, Scopus, Google Scholar, and PubMed have been extensively used in the search for English references. The phytochemical profile of Wedelia species consisted of 290 secondary metabolites, which can be classified as terpenoids, phytosterols, saponins, phenolics, and others. Sesquiterpenoids and ent-kaurane diterpenoids were the major compounds. Wedelia species are also rich in terpenic essential oils. Wedelia constituents have a broad panel of pharmacological activities, such as anticancer, anti-inflammatory, antioxidant, antimicrobial, antidiabetic, antinociceptive, and antiviral activities. It is also useful in applications that protect the neurons, liver, and bones, and aid in wound healing. Bezofuran, wedelolactone, and two major diterpenoids, kaurenoic acid and grandiflorenic acid, are likely the bioactive molecules. Various molecular mechanisms of anti-inflammatory action have been proposed, including the nuclear factor kappa B/mitogen-activated protein kinase (NF-κB/MAPK) signaling pathway. Wedelia extracts were associated with an LD50 value of more than 2000 mg/kg to rats. Nanoformulation and semisynthesis would enhance the pharmacological activities of Wedelia. In vitro and in vivo pharmacological studies for a vast number of Wedelia isolates are encouraged. Developing new formulations with more therapeutic value is expected.
菊科植物以治疗多种炎症相关疾病而闻名,如百日咳和咽炎。本属植物含有多种生物活性代谢物。本文全面介绍了有关Wedelia的科学研究,包括植物化学记录、药理价值、毒理学评价以及纳米和半合成制剂。四个在线资源Web of Science, Scopus, b谷歌Scholar和PubMed已被广泛用于搜索英文参考文献。Wedelia的植物化学特征包括290种次生代谢物,可分为萜类、植物甾醇、皂苷、酚类等。倍半萜类和对戊烷二萜类是主要化合物。海苔属植物也富含萜烯类精油。罂粟属植物成分具有广泛的药理活性,如抗癌、抗炎、抗氧化、抗菌、抗糖尿病、抗结核和抗病毒活性。它在保护神经元、肝脏和骨骼以及帮助伤口愈合方面也很有用。苯并呋喃、维德内酯和两种主要的二萜类化合物,丁香烯酸和大花绿烯酸,可能是具有生物活性的分子。抗炎作用的多种分子机制已被提出,包括核因子κB/丝裂原活化蛋白激酶(NF-κB/MAPK)信号通路。枸杞提取物对大鼠的LD50值大于2000 mg/kg。纳米配方和半合成能增强其药理活性。在体外和体内药理学研究,对大量的Wedelia分离鼓励。期望开发具有更多治疗价值的新配方。
{"title":"Wedelia species: phytochemistry, pharmacology, toxicology, nanoformulation, and synthetic modification- an extensive review","authors":"Ta Thi Thu Thuy, Do Thi Lan Huong, Duong Quang Huan, Nguyen Thi Hanh, Huynh Thi Ngoc Ni, Phan Hong Minh, Ninh The Son","doi":"10.1007/s00044-025-03452-y","DOIUrl":"10.1007/s00044-025-03452-y","url":null,"abstract":"<div><p><i>Wedelia</i> species (the Asteraceae family) are renowned for treating several inflammation-related diseases clinically, such as pertussis and pharyngitis. Plants of the genus contain diverse bioactive metabolites. The review comprehensively describes scientific investigations regarding <i>Wedelia</i> species, comprising phytochemical record, pharmacological value, toxicological evaluation, and nano- and semisynthetic preparations. Four online sources Web of Science, Scopus, Google Scholar, and PubMed have been extensively used in the search for English references. The phytochemical profile of <i>Wedelia</i> species consisted of 290 secondary metabolites, which can be classified as terpenoids, phytosterols, saponins, phenolics, and others. Sesquiterpenoids and <i>ent</i>-kaurane diterpenoids were the major compounds. <i>Wedelia</i> species are also rich in terpenic essential oils. <i>Wedelia</i> constituents have a broad panel of pharmacological activities, such as anticancer, anti-inflammatory, antioxidant, antimicrobial, antidiabetic, antinociceptive, and antiviral activities. It is also useful in applications that protect the neurons, liver, and bones, and aid in wound healing. Bezofuran, wedelolactone, and two major diterpenoids, kaurenoic acid and grandiflorenic acid, are likely the bioactive molecules. Various molecular mechanisms of anti-inflammatory action have been proposed, including the nuclear factor kappa B/mitogen-activated protein kinase (NF-κB/MAPK) signaling pathway. <i>Wedelia</i> extracts were associated with an LD<sub>50</sub> value of more than 2000 mg/kg to rats. Nanoformulation and semisynthesis would enhance the pharmacological activities of <i>Wedelia</i>. In vitro and in vivo pharmacological studies for a vast number of <i>Wedelia</i> isolates are encouraged. Developing new formulations with more therapeutic value is expected.</p><div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":699,"journal":{"name":"Medicinal Chemistry Research","volume":"34 9","pages":"1855 - 1887"},"PeriodicalIF":3.1,"publicationDate":"2025-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145028238","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The DPPH radical scavenging, α-glucosidase inhibitory, nitric oxide (NO) inhibitory, and cytotoxic activities of the extracts from fruiting bodies of wood-rot basidiomycete Fulvifomes fastuosus were evaluated in this study. While the CH2Cl2 extract was biologically inactive, chromatographic fractionation led to the isolation of two chlorinated hydroquinone derivatives, drosophilin A methyl ether (DAME; 1) and drosophilin A (DA; 2). The EtOAc-partitioned fraction, obtained from the partitioning of the MeOH extract, exhibited strong α-glucosidase and NO inhibitory activities. Further investigation led to the isolation of inoscavin A (3) as the major constituent, along with inoscavin E (4) and polyphenols (5–7). Inoscavin A demonstrated potent α-glucosidase inhibition (IC50 = 3.22 µM), surpassing acarbose by 59-fold, and exhibited non-competitive inhibition kinetics (Kᵢ = 3.25 µM). Molecular docking studies supported an allosteric binding mode. It also displayed favorable drug-likeness and ADMET (absorption, distribution, metabolism, excretion, and toxicity) profiles, including good solubility, high intestinal absorption, low central nervous system (CNS) penetration, and absence of hepatotoxicity. These results suggest that F. fastuosus is a promising source of antidiabetic agents, with inoscavin A as a principle active compound.
{"title":"Potent α-glucosidase inhibitory activity of inoscavin A from fruiting bodies of Fulvifomes fastuosus: Mechanism of action, molecular docking and ADMET","authors":"Khemika Singmahan, Chiraphat Takpho, Nadtanet Nunthaboot, Worrawat Promden, Ruchilak Rattarom, Khwanyuruan Naksuwankul, Kusavadee Sangdee, Aphidech Sangdee, Masahiko Isaka, Prapairat Seephonkai","doi":"10.1007/s00044-025-03461-x","DOIUrl":"10.1007/s00044-025-03461-x","url":null,"abstract":"<div><p>The DPPH radical scavenging, <i>α</i>-glucosidase inhibitory, nitric oxide (NO) inhibitory, and cytotoxic activities of the extracts from fruiting bodies of wood-rot basidiomycete <i>Fulvifomes fastuosus</i> were evaluated in this study. While the CH<sub>2</sub>Cl<sub>2</sub> extract was biologically inactive, chromatographic fractionation led to the isolation of two chlorinated hydroquinone derivatives, drosophilin A methyl ether (DAME; <b>1</b>) and drosophilin A (DA; <b>2</b>). The EtOAc-partitioned fraction, obtained from the partitioning of the MeOH extract, exhibited strong <i>α</i>-glucosidase and NO inhibitory activities. Further investigation led to the isolation of inoscavin A (<b>3</b>) as the major constituent, along with inoscavin E (<b>4</b>) and polyphenols (<b>5</b>–<b>7</b>). Inoscavin A demonstrated potent <i>α</i>-glucosidase inhibition (IC<sub>50</sub> = 3.22 µM), surpassing acarbose by 59-fold, and exhibited non-competitive inhibition kinetics (<i>K</i>ᵢ = 3.25 µM). Molecular docking studies supported an allosteric binding mode. It also displayed favorable drug-likeness and ADMET (absorption, distribution, metabolism, excretion, and toxicity) profiles, including good solubility, high intestinal absorption, low central nervous system (CNS) penetration, and absence of hepatotoxicity. These results suggest that <i>F. fastuosus</i> is a promising source of antidiabetic agents, with inoscavin A as a principle active compound.</p><div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":699,"journal":{"name":"Medicinal Chemistry Research","volume":"34 9","pages":"1989 - 2001"},"PeriodicalIF":3.1,"publicationDate":"2025-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145028187","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Formononetin (FMN), a natural isoflavone with broad biological activity, has emerged as a potential lead molecule as an anticancer agent. In this work, different FMN ester derivatives were synthesized via an acylation reaction (3a-d). The structural characterization and purity of the compounds were confirmed through NMR, HRMS, and HPLC analysis. Among the synthesized derivatives, the 4-Morpholinecarbonyl chloride conjugated FMN (FMN-4Morpho; 3b) demonstrated significantly (p < 0.05) enhanced cytotoxicity against multiple cancer cell lines, including A549, B16F10, and 4T1, while showing no notable toxicity up to 200 μM in non-cancerous L929 fibroblasts and RAW 264.7 macrophages, indicating good biocompatibility. The mechanistic evaluations in A549 and 4T1 cells revealed elevated ROS production, disruption of mitochondrial membrane potential, and increased apoptosis, as revealed by JC-1 and Annexin V-FITC/PI staining. Additionally, FMN-4Morpho suppressed colony formation and cell migration, downregulated cyclin A, cyclin D1, MMP-2, and MMP-9, and upregulated p53 and Bax expression, thereby lowering the Bcl-2/Bax ratio. The findings highlight FMN-4Morpho as a promising therapeutic candidate with improved anticancer efficacy.
{"title":"Synthesis, characterization and biological evaluation of formononetin derivatives as anticancer agents","authors":"Neha Bhardwaj, Kajal Kaliya, Sudesh Kumar Yadav, Ankit Saneja","doi":"10.1007/s00044-025-03460-y","DOIUrl":"10.1007/s00044-025-03460-y","url":null,"abstract":"<div><p>Formononetin (FMN), a natural isoflavone with broad biological activity, has emerged as a potential lead molecule as an anticancer agent. In this work, different FMN ester derivatives were synthesized via an acylation reaction (3a-d). The structural characterization and purity of the compounds were confirmed through NMR, HRMS, and HPLC analysis. Among the synthesized derivatives, the 4-Morpholinecarbonyl chloride conjugated FMN (FMN-4Morpho; 3b) demonstrated significantly (p < 0.05) enhanced cytotoxicity against multiple cancer cell lines, including A549, B16F10, and 4T1, while showing no notable toxicity up to 200 μM in non-cancerous L929 fibroblasts and RAW 264.7 macrophages, indicating good biocompatibility. The mechanistic evaluations in A549 and 4T1 cells revealed elevated ROS production, disruption of mitochondrial membrane potential, and increased apoptosis, as revealed by JC-1 and Annexin V-FITC/PI staining. Additionally, FMN-4Morpho suppressed colony formation and cell migration, downregulated cyclin A, cyclin D1, MMP-2, and MMP-9, and upregulated p53 and Bax expression, thereby lowering the Bcl-2/Bax ratio. The findings highlight FMN-4Morpho as a promising therapeutic candidate with improved anticancer efficacy.</p><div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":699,"journal":{"name":"Medicinal Chemistry Research","volume":"34 9","pages":"1974 - 1988"},"PeriodicalIF":3.1,"publicationDate":"2025-08-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145028183","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Inflammation plays a crucial role in the onset and progression of various diseases. However, current anti-inflammatory therapies often produce adverse effects that limit their clinical utility. This review focuses on the therapeutic potential of iridoid glycosides, a class of monoterpenoid compounds known for their anti-inflammatory properties. Drawing on literature from PubMed and Google Scholar, this study comprehensively examines eight well-studied iridoid glycosides in terms of their sources, administration methods, dosages, target inflammatory models, and mechanisms of action. The compounds were found to modulate critical signaling pathways, including NF-κB, NLRP3 inflammasome, MAPK, and JAK-STAT, thereby suppressing key inflammatory cytokines such as TNF-α, IL-1β, and IL-6, while also activating antioxidant defenses. Structure–activity relationship analysis suggests that glycosyl, ester, and epoxy groups are essential pharmacophores for their bioactivity. Collectively, these findings underscore the promise of iridoid glycosides as effective and safer alternatives for managing inflammatory diseases.
{"title":"The anti-inflammatory effects of iridoid glycosides: a comprehensive review of mechanisms of action and structure-activity relationships","authors":"Xinyue Zheng, Wenwen Li, Mingtao Wang, Haiyi Gao, Yian Zhao, Peiliang Dong, Hua Han","doi":"10.1007/s00044-025-03456-8","DOIUrl":"10.1007/s00044-025-03456-8","url":null,"abstract":"<div><p>Inflammation plays a crucial role in the onset and progression of various diseases. However, current anti-inflammatory therapies often produce adverse effects that limit their clinical utility. This review focuses on the therapeutic potential of iridoid glycosides, a class of monoterpenoid compounds known for their anti-inflammatory properties. Drawing on literature from PubMed and Google Scholar, this study comprehensively examines eight well-studied iridoid glycosides in terms of their sources, administration methods, dosages, target inflammatory models, and mechanisms of action. The compounds were found to modulate critical signaling pathways, including NF-κB, NLRP3 inflammasome, MAPK, and JAK-STAT, thereby suppressing key inflammatory cytokines such as TNF-α, IL-1β, and IL-6, while also activating antioxidant defenses. Structure–activity relationship analysis suggests that glycosyl, ester, and epoxy groups are essential pharmacophores for their bioactivity. Collectively, these findings underscore the promise of iridoid glycosides as effective and safer alternatives for managing inflammatory diseases.</p><div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":699,"journal":{"name":"Medicinal Chemistry Research","volume":"34 9","pages":"1833 - 1854"},"PeriodicalIF":3.1,"publicationDate":"2025-08-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145028184","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-08-19DOI: 10.1007/s00044-025-03454-w
Kuntala Dey, Nina Erwin, Nicolas Molina, Hui Chen, Mei He, Guangrong Zheng
As a novel therapeutic strategy, targeted protein degradation (TPD) enables the selective elimination of disease-driving proteins through endogenous degradation pathways such as the ubiquitin-proteasome system and lysosomal trafficking. However, the therapeutic potential of TPD agents is often limited by poor solubility, low bioavailability, off-target toxicity, and inefficient intracellular delivery. Nanocarrier-based delivery systems offer a promising solution to these challenges by enabling controlled release, enhanced pharmacokinetics, and precise intracellular trafficking of TPD agents, including PROteolysis TArgeting Chimera (PROTACs), LYsosome-TArgeting Chimeras (LYTACs), or AUtophagy-TArgeting Chimeras (AUTACs). These systems can be engineered to respond to tumor-specific internal stimuli (e.g., pH, redox environment, enzymes) or external triggers (e.g., light, ultrasound, magnetic fields), enabling spatiotemporal control of drug release while minimizing systemic toxicity. Furthermore, modular nanocarrier designs allow for co-delivery with synergistic therapeutics, improved endosomal escape, and surface modification for cell-specific targeting. Recent innovations, including the development of exosome-based and carrier-free nanotechnology-enabled TPD platforms (Nano-TPDs), further expand the landscape of degradable targets and therapeutic indications. This review highlights the design principles, current advances, and future directions of nano-TPD systems, with an emphasis on their potential to overcome delivery barriers and redefine precision oncology.
{"title":"Nano-TPD: Using nanoparticle-based systems to improve the delivery and therapeutic effect of targeted protein degraders","authors":"Kuntala Dey, Nina Erwin, Nicolas Molina, Hui Chen, Mei He, Guangrong Zheng","doi":"10.1007/s00044-025-03454-w","DOIUrl":"10.1007/s00044-025-03454-w","url":null,"abstract":"<div><p>As a novel therapeutic strategy, targeted protein degradation (TPD) enables the selective elimination of disease-driving proteins through endogenous degradation pathways such as the ubiquitin-proteasome system and lysosomal trafficking. However, the therapeutic potential of TPD agents is often limited by poor solubility, low bioavailability, off-target toxicity, and inefficient intracellular delivery. Nanocarrier-based delivery systems offer a promising solution to these challenges by enabling controlled release, enhanced pharmacokinetics, and precise intracellular trafficking of TPD agents, including PROteolysis TArgeting Chimera (PROTACs), LYsosome-TArgeting Chimeras (LYTACs), or AUtophagy-TArgeting Chimeras (AUTACs). These systems can be engineered to respond to tumor-specific internal stimuli (e.g., pH, redox environment, enzymes) or external triggers (e.g., light, ultrasound, magnetic fields), enabling spatiotemporal control of drug release while minimizing systemic toxicity. Furthermore, modular nanocarrier designs allow for co-delivery with synergistic therapeutics, improved endosomal escape, and surface modification for cell-specific targeting. Recent innovations, including the development of exosome-based and carrier-free nanotechnology-enabled TPD platforms (Nano-TPDs), further expand the landscape of degradable targets and therapeutic indications. This review highlights the design principles, current advances, and future directions of nano-TPD systems, with an emphasis on their potential to overcome delivery barriers and redefine precision oncology.</p><div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":699,"journal":{"name":"Medicinal Chemistry Research","volume":"34 in","pages":"2205 - 2227"},"PeriodicalIF":3.1,"publicationDate":"2025-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145493357","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-08-18DOI: 10.1007/s00044-025-03457-7
Vanisa Petriti, Amit Mondal, Yousong Ding
Cytochrome P450s (CYP450s) are a diverse and functionally rich family of heme-containing enzymes that play vital roles in the metabolism of endogenous and xenobiotic compounds. In recent years, microbial CYP450s have gained attention for their potential in environmental bioremediation due to their ability to oxidize a wide range of chemically complex and recalcitrant pollutants. This mini-review provides an overview of CYP450s and highlights their emerging roles in the degradation of selected environmental pollutants, including pharmaceuticals, personal care products (PPCPs), polycyclic aromatic hydrocarbons (PAHs), and polychlorinated biphenyls (PCBs). We further discuss recent advances in CYP450 discovery enabled by metagenomic mining, sequence similarity networks, and machine learning/artificial intelligence (ML/AI), along with innovations in enzyme engineering through rational design, site-directed mutagenesis, and ML/AI-guided directed evolution. Collectively, these developments illustrate the growing potential of microbial CYP450s as sustainable biocatalysts for tackling complex environmental contaminants.
{"title":"Biocatalytic potential of microbial CYP450s in the degradation of selected environmental pollutants","authors":"Vanisa Petriti, Amit Mondal, Yousong Ding","doi":"10.1007/s00044-025-03457-7","DOIUrl":"10.1007/s00044-025-03457-7","url":null,"abstract":"<div><p>Cytochrome P450s (CYP450s) are a diverse and functionally rich family of heme-containing enzymes that play vital roles in the metabolism of endogenous and xenobiotic compounds. In recent years, microbial CYP450s have gained attention for their potential in environmental bioremediation due to their ability to oxidize a wide range of chemically complex and recalcitrant pollutants. This mini-review provides an overview of CYP450s and highlights their emerging roles in the degradation of selected environmental pollutants, including pharmaceuticals, personal care products (PPCPs), polycyclic aromatic hydrocarbons (PAHs), and polychlorinated biphenyls (PCBs). We further discuss recent advances in CYP450 discovery enabled by metagenomic mining, sequence similarity networks, and machine learning/artificial intelligence (ML/AI), along with innovations in enzyme engineering through rational design, site-directed mutagenesis, and ML/AI-guided directed evolution. Collectively, these developments illustrate the growing potential of microbial CYP450s as sustainable biocatalysts for tackling complex environmental contaminants.</p><div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":699,"journal":{"name":"Medicinal Chemistry Research","volume":"34 in","pages":"2228 - 2238"},"PeriodicalIF":3.1,"publicationDate":"2025-08-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145493522","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-08-16DOI: 10.1007/s00044-025-03455-9
Mahmoud A. Al-Sha’er, Afnan A. Alzaghari, Mutasem O. Taha
This study employed structure-based drug design to discover novel inhibitors of Adaptor Associated Kinase 1 (AAK1) as potential anticancer agents. A total of 300 pharmacophore models were generated from AAK1 co-crystallized protein structures, from which the optimal model (Hypo1) was selected based on receiver operating characteristic (ROC) analysis (AUC = 82.3%) and further refined using shape-based alignment. Virtual screening of the National Cancer Institute (NCI) database yielded 7399 initial hits, which were narrowed down to 3481 compounds through Lipinski’s rule of five and SMARTS pattern filtering. Subsequent molecular docking against the AAK1 active site identified 438 candidates, of which the top 40 were selected for biological evaluation. Among these, Hit 5 (NCI 157865) exhibited the most potent AAK1 inhibition (IC50 = 1.03 µM), with other active hits showing IC50 values ranging from 1.87 to 7.49 µM. MTT assays confirmed the anticancer activity of Compound 5, with IC50 values of 11.46 µM against MCF7 and 69.37 µM against A549 cell lines. The compound’s potency is attributed to key hydrophobic interactions and hydrogen bond acceptor features. These results highlight Compound 5 as a promising lead candidate for further development as an anticancer agent.
Hypo1 fitted against hit 5 as compared to its 2D interactions within AAK1 binding site with IC50 = 1.05 μM
{"title":"Identification and evaluation of potent AAK1 inhibitors through structure-based pharmacophores, virtual screening and bioassay screening","authors":"Mahmoud A. Al-Sha’er, Afnan A. Alzaghari, Mutasem O. Taha","doi":"10.1007/s00044-025-03455-9","DOIUrl":"10.1007/s00044-025-03455-9","url":null,"abstract":"<div><p>This study employed structure-based drug design to discover novel inhibitors of Adaptor Associated Kinase 1 (AAK1) as potential anticancer agents. A total of 300 pharmacophore models were generated from AAK1 co-crystallized protein structures, from which the optimal model (<b>Hypo1</b>) was selected based on receiver operating characteristic (ROC) analysis (AUC = 82.3%) and further refined using shape-based alignment. Virtual screening of the National Cancer Institute (NCI) database yielded 7399 initial hits, which were narrowed down to 3481 compounds through Lipinski’s rule of five and SMARTS pattern filtering. Subsequent molecular docking against the AAK1 active site identified 438 candidates, of which the top 40 were selected for biological evaluation. Among these, Hit 5 (NCI 157865) exhibited the most potent AAK1 inhibition (IC<sub>50</sub> = 1.03 µM), with other active hits showing IC<sub>50</sub> values ranging from 1.87 to 7.49 µM. MTT assays confirmed the anticancer activity of Compound 5, with IC<sub>50</sub> values of 11.46 µM against MCF7 and 69.37 µM against A549 cell lines. The compound’s potency is attributed to key hydrophobic interactions and hydrogen bond acceptor features. These results highlight Compound 5 as a promising lead candidate for further development as an anticancer agent.</p><div><figure><div><div><picture><source><img></source></picture></div><div><p><b>Hypo1</b> fitted against hit <b>5</b> as compared to its 2D interactions within AAK1 binding site with IC<sub>50</sub> = 1.05 μM</p></div></div></figure></div></div>","PeriodicalId":699,"journal":{"name":"Medicinal Chemistry Research","volume":"34 9","pages":"1945 - 1957"},"PeriodicalIF":3.1,"publicationDate":"2025-08-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145028421","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-08-16DOI: 10.1007/s00044-025-03458-6
Swati Nagar, Upendra Argikar, Ken Korzekwa
{"title":"Translational insights from species differences in the metabolism of triclosan","authors":"Swati Nagar, Upendra Argikar, Ken Korzekwa","doi":"10.1007/s00044-025-03458-6","DOIUrl":"10.1007/s00044-025-03458-6","url":null,"abstract":"","PeriodicalId":699,"journal":{"name":"Medicinal Chemistry Research","volume":"34 in","pages":"2200 - 2204"},"PeriodicalIF":3.1,"publicationDate":"2025-08-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145493523","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-08-15DOI: 10.1007/s00044-025-03453-x
Linggai Cao, Ping Dong, Jie Liu, Jie Zhang, He Xie, Shizhou Yu, Jianfeng Zhang
Saponin-based adjuvants have emerged as promising candidates for enhancing vaccine efficacy by modulating immune responses. Derived primarily from plant and marine sources, saponins possess unique amphiphilic structures that contribute to their potent immunostimulatory properties. This review explores the advancements in saponin-based vaccine adjuvants, focusing on their immunomodulatory mechanisms, structural diversity, and applications. QS-21, a triterpenoid saponin from Quillaja saponaria, is the most extensively studied and has been incorporated into licensed vaccines such as Shingrix, Mosquirix, and Arexvy. However, the limitations of natural saponin-derived adjuvants, including hemolytic toxicity, hydrolytic instability, and low yield, have driven research toward semi-synthetic and synthetic analogs. Advances in synthetic biology and biosynthetic pathway elucidation have enabled the development of next-generation saponin-based adjuvants with enhanced potency and reduced toxicity. This review provides a comprehensive overview of the current state of saponin-based adjuvant research, highlighting their potential to revolutionize vaccine formulations and contribute to global public health initiatives.
{"title":"Advancements in saponin-based vaccine adjuvants","authors":"Linggai Cao, Ping Dong, Jie Liu, Jie Zhang, He Xie, Shizhou Yu, Jianfeng Zhang","doi":"10.1007/s00044-025-03453-x","DOIUrl":"10.1007/s00044-025-03453-x","url":null,"abstract":"<div><p>Saponin-based adjuvants have emerged as promising candidates for enhancing vaccine efficacy by modulating immune responses. Derived primarily from plant and marine sources, saponins possess unique amphiphilic structures that contribute to their potent immunostimulatory properties. This review explores the advancements in saponin-based vaccine adjuvants, focusing on their immunomodulatory mechanisms, structural diversity, and applications. QS-21, a triterpenoid saponin from <i>Quillaja saponaria</i>, is the most extensively studied and has been incorporated into licensed vaccines such as Shingrix, Mosquirix, and Arexvy. However, the limitations of natural saponin-derived adjuvants, including hemolytic toxicity, hydrolytic instability, and low yield, have driven research toward semi-synthetic and synthetic analogs. Advances in synthetic biology and biosynthetic pathway elucidation have enabled the development of next-generation saponin-based adjuvants with enhanced potency and reduced toxicity. This review provides a comprehensive overview of the current state of saponin-based adjuvant research, highlighting their potential to revolutionize vaccine formulations and contribute to global public health initiatives.</p><div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":699,"journal":{"name":"Medicinal Chemistry Research","volume":"34 9","pages":"1817 - 1832"},"PeriodicalIF":3.1,"publicationDate":"2025-08-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s00044-025-03453-x.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145028220","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}