Pub Date : 2024-09-13DOI: 10.1007/s00044-024-03308-x
Mohd Faiyyaz, Akanksha Tiwari, Nuzhat Bashir, Malik Nasibullah, Sahir Sultan Alvi, Mohammed Haris Siddiqui, Mohd Asif
Herein, the privilege in favor of biological importance of indole-containing scaffolds related to the semi-synthetic and extracted from natural sources is summarized. Such compounds have shown notable medicinal significance and are used in the treatment of various carcinomas after FDA approval. The chemistry of indoles’ skeleton derivatives showed various conformations at specific conditions, including tautomerization, when they came into contact with polar solvents; consequently, such phenomena are responsible for enhancing the biological effect on enzymes. In the foregoing review study in the past decade, we demonstrated the biological significance and the transformation of drug analysis owing to resonating structures. Functionalize groups, it was noted that pi-bonds-unsaturated functions, sp1/2/3 hybridized methylene groups, cyclic ethers, primary amino groups, halogens, and staggered conformations displayed the most potent active drug-like molecules. The aim of this report is that drugs like lead molecules could be derivatized for the discovery of more effective drugs on the basis of their possible active sites on the surface in the future.
{"title":"Medicinal significance of sp2/sp3 hybridized at C-3-substituted indole-containing lead molecules and FDA-approved drugs","authors":"Mohd Faiyyaz, Akanksha Tiwari, Nuzhat Bashir, Malik Nasibullah, Sahir Sultan Alvi, Mohammed Haris Siddiqui, Mohd Asif","doi":"10.1007/s00044-024-03308-x","DOIUrl":"10.1007/s00044-024-03308-x","url":null,"abstract":"<div><p>Herein, the privilege in favor of biological importance of indole-containing scaffolds related to the semi-synthetic and extracted from natural sources is summarized. Such compounds have shown notable medicinal significance and are used in the treatment of various carcinomas after FDA approval. The chemistry of indoles’ skeleton derivatives showed various conformations at specific conditions, including tautomerization, when they came into contact with polar solvents; consequently, such phenomena are responsible for enhancing the biological effect on enzymes. In the foregoing review study in the past decade, we demonstrated the biological significance and the transformation of drug analysis owing to resonating structures. Functionalize groups, it was noted that <i>pi</i>-bonds-unsaturated functions, <i>sp</i><sup><i>1/2/3</i></sup> hybridized methylene groups, cyclic ethers, primary amino groups, halogens, and staggered conformations displayed the most potent active drug-like molecules. The aim of this report is that drugs like lead molecules could be derivatized for the discovery of more effective drugs on the basis of their possible active sites on the surface in the future.</p><div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":699,"journal":{"name":"Medicinal Chemistry Research","volume":"33 12","pages":"2306 - 2328"},"PeriodicalIF":2.6,"publicationDate":"2024-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142181136","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-11DOI: 10.1007/s00044-024-03303-2
Divyadeepika, Jyoti Joshi
The genus Plumeria of the Apocynaceae family has a rich history of traditional medicines supported by empirical evidences. This review consolidates diverse biological attributes, phytochemical compositions, physical properties (melting point, shape, optical rotation, etc.), and analytical data (UV, IR, Mass spectroscopic data, elemental analysis) of various species of Plumeria. The review covered the chemistry of wide range of natural compounds like iridoids, triterpenoids, alkaloids, flavonoids, steroids, cardiac glycosides, quinones, anthocyanins, cardenolides, fatty acid esters, lignans, coumarins, etc. found in various species of the genus Plumeria. Analytical techniques including chromatography, IR, UV, and mass spectroscopy have significantly contributed to elucidating the complex chemical profiles of extracts of various species of Plumeria which are systematically presented in a tabular format. The review also defines the historical background, geographical distribution, and traditional uses of various species of the genus Plumeria. The review also includes the mechanisms of action and biotransformation of compounds, providing a deeper understanding of their therapeutic potential. The comprehensive review reveals the significance of the natural products isolated from a number of species of genus Plumeria. It is also suggestive that there is an extensive scope for further investigation to explore new therapeutic components of the genus Plumeria.
{"title":"A review on phytochemical constituents, analytical data, and pharmacological properties of the genus Plumeria","authors":"Divyadeepika, Jyoti Joshi","doi":"10.1007/s00044-024-03303-2","DOIUrl":"10.1007/s00044-024-03303-2","url":null,"abstract":"<div><p>The genus <i>Plumeria</i> of the <i>Apocynaceae</i> family has a rich history of traditional medicines supported by empirical evidences. This review consolidates diverse biological attributes, phytochemical compositions, physical properties (melting point, shape, optical rotation, etc.), and analytical data (UV, IR, Mass spectroscopic data, elemental analysis) of various species of <i>Plumeria</i>. The review covered the chemistry of wide range of natural compounds like iridoids, triterpenoids, alkaloids, flavonoids, steroids, cardiac glycosides, quinones, anthocyanins, cardenolides, fatty acid esters, lignans, coumarins, <i>etc</i>. found in various species of the genus <i>Plumeria</i>. Analytical techniques including chromatography, IR, UV, and mass spectroscopy have significantly contributed to elucidating the complex chemical profiles of extracts <i>of</i> various species of <i>Plumeria</i> which are systematically presented in a tabular format. The review also defines the historical background, geographical distribution, and traditional uses of various species of the genus <i>Plumeria</i>. The review also includes the mechanisms of action and biotransformation of compounds, providing a deeper understanding of their therapeutic potential. The comprehensive review reveals the significance of the natural products isolated from a number of species of genus <i>Plumeria</i>. It is also suggestive that there is an extensive scope for further investigation to explore new therapeutic components of the genus <i>Plumeria</i>.</p></div>","PeriodicalId":699,"journal":{"name":"Medicinal Chemistry Research","volume":"33 12","pages":"2252 - 2305"},"PeriodicalIF":2.6,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142181137","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-10DOI: 10.1007/s00044-024-03295-z
Neeru Bhanwala, Niranjana Sri Sundaramoorthy, Sirisha Gollapudi, Anita Sharma, Ramandeep Singh, Gopal L. Khatik
Tuberculosis (TB) is a contagious disease caused by M. tuberculosis (Mtb) affecting people across the globe. Quinoline and chalcone cores have good anti-tubercular properties; thus, we have designed a hybrid scaffold containing quinoline and chalcone. A series of 3-(quinolin-3-yl)-1-phenylprop-2-en-1-one analogs 7a-p and 8a-k were synthesized through different reactions involving nucleophilic substitution, Vilsmeier Haack formylation, Claisen Schmidt condensation, and demethylation. Spectroscopic methods, including 1H NMR, 13C NMR, IR, and HRMS, were used to characterize all synthesized compounds. The anti-tubercular activity of compounds 7a-p and 8a-k was assessed against Mtb H37Rv (ATCC 27294). These compounds demonstrated anti-tubercular activity against H37Rv in the range of 6.25–50 μM. Swiss ADME’s in silico computational studies showed that the ADME parameters were better and had a good pharmacokinetic profile. The compounds 8a, 7a, and 7p showed the most potential as anti-TB activity against Mtb H37Rv in this study, with MIC values of 6.25 μM, 12.5 μM, and 10 μM, respectively.
{"title":"Design, synthesis, anti-tubercular activity, and computational studies of novel 3-(quinolin-3-yl)-1-phenylprop-2-en-1-one derivatives","authors":"Neeru Bhanwala, Niranjana Sri Sundaramoorthy, Sirisha Gollapudi, Anita Sharma, Ramandeep Singh, Gopal L. Khatik","doi":"10.1007/s00044-024-03295-z","DOIUrl":"10.1007/s00044-024-03295-z","url":null,"abstract":"<div><p>Tuberculosis (TB) is a contagious disease caused by <i>M. tuberculosis</i> (<i>Mtb</i>) affecting people across the globe. Quinoline and chalcone cores have good anti-tubercular properties; thus, we have designed a hybrid scaffold containing quinoline and chalcone. A series of 3-(quinolin-3-yl)-1-phenylprop-2-en-1-one analogs <b>7a-p</b> and <b>8a-k</b> were synthesized through different reactions involving nucleophilic substitution, Vilsmeier Haack formylation, Claisen Schmidt condensation, and demethylation. Spectroscopic methods, including <sup>1</sup>H NMR, <sup>13</sup>C NMR, IR, and HRMS, were used to characterize all synthesized compounds. The anti-tubercular activity of compounds <b>7a-p</b> and <b>8a-k</b> was assessed against <i>Mtb</i> H<sub>37</sub>Rv (ATCC 27294). These compounds demonstrated anti-tubercular activity against H<sub>37</sub>Rv in the range of 6.25–50 μM. Swiss ADME’s in silico computational studies showed that the ADME parameters were better and had a good pharmacokinetic profile. The compounds <b>8a, 7a</b>, and <b>7p</b> showed the most potential as anti-TB activity against <i>Mtb</i> H37Rv in this study, with MIC values of 6.25 μM, 12.5 μM, and 10 μM, respectively.</p><div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":699,"journal":{"name":"Medicinal Chemistry Research","volume":"33 10","pages":"1926 - 1937"},"PeriodicalIF":2.6,"publicationDate":"2024-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142181142","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-08DOI: 10.1007/s00044-024-03306-z
Yaxiao Liu, Linwei Dan, Jiamei Tang, Zitong Yin, Longzhu Yang, Dongdong Zhang, Xiaomei Song, Wei Wang, Yuze Li
Salidroside (Sal), a natural phenolic glycoside ubiquitous across all species of the Rhodiola genus, has garnered considerable attention in contemporary pharmacological research. Its multifaceted pharmacological profile encompasses anti-tumor, anti-hypoxia, anti-inflammatory, and anti-atherosclerotic properties, among others. Notably, its pharmacological repertoire extends to safeguarding against hypoxic injury, particularly in high-altitude environments. Furthermore, Sal serves as a key indicator for assessing the quality of Rhodiola. It is capable of exerting biological activity on the nervous system, cardiovascular system and internal organs of the body through various pathways and mechanisms, and thus has the potential to be therapeutically effective in the treatment of diseases associated with these systems. In order to optimize the effectiveness and safety of Sal’s application and ensure the isolation of highly pure and stable monomer components, its extraction and purification processes were refined. In addition, it is important to protect wild plant resources and meet market demand, as well as to explore Sal and its synthetic products, in consideration of its anti-altitude anoxia biological characteristics. Therefore, this paper reviewed the source, extraction and purification, pharmacological effects, biological activity, synthesis and product application of Sal, updated and deepened the understanding of Sal, and provided theoretical basis for the further research of Sal.
{"title":"Extraction and purification, pharmacological action, synthesis and product development of salidroside: a review","authors":"Yaxiao Liu, Linwei Dan, Jiamei Tang, Zitong Yin, Longzhu Yang, Dongdong Zhang, Xiaomei Song, Wei Wang, Yuze Li","doi":"10.1007/s00044-024-03306-z","DOIUrl":"10.1007/s00044-024-03306-z","url":null,"abstract":"<div><p>Salidroside (Sal), a natural phenolic glycoside ubiquitous across all species of the <i>Rhodiola</i> genus, has garnered considerable attention in contemporary pharmacological research. Its multifaceted pharmacological profile encompasses anti-tumor, anti-hypoxia, anti-inflammatory, and anti-atherosclerotic properties, among others. Notably, its pharmacological repertoire extends to safeguarding against hypoxic injury, particularly in high-altitude environments. Furthermore, Sal serves as a key indicator for assessing the quality of <i>Rhodiola</i>. It is capable of exerting biological activity on the nervous system, cardiovascular system and internal organs of the body through various pathways and mechanisms, and thus has the potential to be therapeutically effective in the treatment of diseases associated with these systems. In order to optimize the effectiveness and safety of Sal’s application and ensure the isolation of highly pure and stable monomer components, its extraction and purification processes were refined. In addition, it is important to protect wild plant resources and meet market demand, as well as to explore Sal and its synthetic products, in consideration of its anti-altitude anoxia biological characteristics. Therefore, this paper reviewed the source, extraction and purification, pharmacological effects, biological activity, synthesis and product application of Sal, updated and deepened the understanding of Sal, and provided theoretical basis for the further research of Sal.</p><div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":699,"journal":{"name":"Medicinal Chemistry Research","volume":"33 10","pages":"1804 - 1828"},"PeriodicalIF":2.6,"publicationDate":"2024-09-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142181139","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-07DOI: 10.1007/s00044-024-03309-w
Tayler D. Prieto Otoya, Kane T. McQuaid, Christine J. Cardin
G-quadruplex DNA secondary structures are formed in guanine-rich sequences and have been found to play an important role in regulating different biological processes. Indeed, guanine-rich sequences with the potential to form G-quadruplexes are present in different regions in the human genome, such as telomeres and the promoter region of different genes, including oncogene promoters. Thus, the rational design of small molecules capable of interacting, stabilising or damaging with high specificity these secondary structures represents an important strategy for the development of potent anticancer drugs. In this review, we highlight the interaction between G-quadruplex structures and their ligands, specifically emphasising the role of metal complexes. We provide detailed structural insight into the binding modes of metal complex-G-quadruplex interaction by analysing 18 sets of coordinates from X-ray and NMR currently available in the Protein Data Bank (PDB), with a primary focus on X-ray structural data.
在富含鸟嘌呤的序列中形成的 G 型四叠体 DNA 二级结构在调节不同的生物过程中发挥着重要作用。事实上,在人类基因组的不同区域,如端粒和不同基因(包括癌基因启动子)的启动子区域,都存在可能形成 G-四叠体的富鸟嘌呤序列。因此,合理设计能够与这些二级结构相互作用、稳定或高特异性地破坏这些二级结构的小分子是开发强效抗癌药物的重要策略。在这篇综述中,我们重点介绍了 G 型四叠体结构与其配体之间的相互作用,特别强调了金属复合物的作用。通过分析蛋白质数据库(PDB)中现有的 18 组 X 射线和核磁共振坐标,我们从结构上详细揭示了金属复合物与 G 型四叉结构相互作用的结合模式,其中主要侧重于 X 射线结构数据。
{"title":"Structural insights into G-quadruplex binding by metal complexes: implications for drug design","authors":"Tayler D. Prieto Otoya, Kane T. McQuaid, Christine J. Cardin","doi":"10.1007/s00044-024-03309-w","DOIUrl":"https://doi.org/10.1007/s00044-024-03309-w","url":null,"abstract":"<p>G-quadruplex DNA secondary structures are formed in guanine-rich sequences and have been found to play an important role in regulating different biological processes. Indeed, guanine-rich sequences with the potential to form G-quadruplexes are present in different regions in the human genome, such as telomeres and the promoter region of different genes, including oncogene promoters. Thus, the rational design of small molecules capable of interacting, stabilising or damaging with high specificity these secondary structures represents an important strategy for the development of potent anticancer drugs. In this review, we highlight the interaction between G-quadruplex structures and their ligands, specifically emphasising the role of metal complexes. We provide detailed structural insight into the binding modes of metal complex-G-quadruplex interaction by analysing 18 sets of coordinates from X-ray and NMR currently available in the Protein Data Bank (PDB), with a primary focus on X-ray structural data.</p>","PeriodicalId":699,"journal":{"name":"Medicinal Chemistry Research","volume":"86 1","pages":""},"PeriodicalIF":2.6,"publicationDate":"2024-09-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142181140","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-07DOI: 10.1007/s00044-024-03310-3
David Monchaud
DNA and RNA G-quadruplexes (G4s) are alternative nucleic acid structures that can fold from thousands of guanine (G)-rich sequences in the genome and transcriptome of human cells. Invaluable information about the prevalence and functional relevance of G4s has been gained using G4-specific small molecules (or G4 ligands): cell-based ligand perturbation experiments have indeed provided readouts that were astutely exploited to gain accurate and reliable insights into G4 biology. As a consequence, these investigations have opened the way towards using G4 ligands as drug candidates to fight against genetic diseases, chiefly cancers. This quite active field of research, at the crossroads between chemical biology and medicinal chemistry, thus entirely relies on specific G4 ligands. The greatest contribution to the G4 ligand field is undoubtedly to be attributed to Prof. Stephen Neidle (London, UK). He was indeed the first to design and synthesize G4-interacting compounds, fully characterize their interaction with their G4 targets, and study them in cells with an eye towards benefiting from the central position of G4s in cellular biology to use them as new targets for therapeutic intervention. This review provides an overview of the developments that the G4 ligand field has experienced since the initial impetus provided by Prof. Neidle in 1997, and depicts the trajectories taken by some of them to become ever smarter molecular tools (chemical biology) or drug candidates under clinical assessment (medicinal chemistry).
{"title":"Translating G-quadruplex ligands from bench to bedside: a Stephen Neidle’s legacy","authors":"David Monchaud","doi":"10.1007/s00044-024-03310-3","DOIUrl":"https://doi.org/10.1007/s00044-024-03310-3","url":null,"abstract":"<p>DNA and RNA G-quadruplexes (G4s) are alternative nucleic acid structures that can fold from thousands of guanine (G)-rich sequences in the genome and transcriptome of human cells. Invaluable information about the prevalence and functional relevance of G4s has been gained using G4-specific small molecules (or G4 ligands): cell-based ligand perturbation experiments have indeed provided readouts that were astutely exploited to gain accurate and reliable insights into G4 biology. As a consequence, these investigations have opened the way towards using G4 ligands as drug candidates to fight against genetic diseases, chiefly cancers. This quite active field of research, at the crossroads between chemical biology and medicinal chemistry, thus entirely relies on specific G4 ligands. The greatest contribution to the G4 ligand field is undoubtedly to be attributed to Prof. Stephen Neidle (London, UK). He was indeed the first to design and synthesize G4-interacting compounds, fully characterize their interaction with their G4 targets, and study them in cells with an eye towards benefiting from the central position of G4s in cellular biology to use them as new targets for therapeutic intervention. This review provides an overview of the developments that the G4 ligand field has experienced since the initial impetus provided by Prof. Neidle in 1997, and depicts the trajectories taken by some of them to become ever smarter molecular tools (chemical biology) or drug candidates under clinical assessment (medicinal chemistry).</p>","PeriodicalId":699,"journal":{"name":"Medicinal Chemistry Research","volume":"115 1","pages":""},"PeriodicalIF":2.6,"publicationDate":"2024-09-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142181138","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-03DOI: 10.1007/s00044-024-03304-1
Sandeep Kumar, Rangan Mitra, Senthil Raja Ayyannan
A set of sesamol-derived acetamides was designed, synthesized, and evaluated against monoamine oxidases (MAO-A and MAO-B) and cholinesterases (AChE and BChE) for targeting neurodegenerative diseases. Most of the tested compounds showed inhibition activity at micromolar to nanomolar ranges. The 3,4-dichoro derivative (compound 19) was the most potent MAO-A inhibitor (IC50 = 0.053 ± 0.001 µM) while the 4-methyl analog (compound 16) emerged as a lead MAO-B inhibitor (IC50 = 0.019 ± 0.001 µM) compared to the reference inhibitors clorgyline (MAO-A IC50 = 0.096 ± 0.003 µM) and selegyline (MAO B IC50 = 0.021 ± 0.002 µM). Further, the 2,4-dichloro analog (compound 20) emerged as a potent dual MAO (MAO-A IC50 = 0.160 ± 0.009 µM, MAO-B IC50 = 0.071 ± 0.002 µM) and ChE (AChE IC50 = 2.611 ± 0.086 µM and BChE IC50 = 4.22 ± 0.162 µM) inhibitor. Moreover, molecular simulation studies revealed that H-bonding and hydrophobic interactions stabilize the virtual lead inhibitor-protein complex. Selected MAO-ChE inhibitors showed significant antioxidant and iron-chelation properties, suggesting their potential in treating neurological disorders characterized by impaired iron homeostasis. In summary, the structural modification attempted in the present study yielded a few nanomolar MAO (MAO-B) inhibitors and, thus, provided new insights into the linker requirements for dual MAO/ChE inhibitory properties.
{"title":"Design, synthesis and evaluation of sesamol-derived acetamides as dual inhibitors of monoamine oxidases and cholinesterases","authors":"Sandeep Kumar, Rangan Mitra, Senthil Raja Ayyannan","doi":"10.1007/s00044-024-03304-1","DOIUrl":"10.1007/s00044-024-03304-1","url":null,"abstract":"<div><p>A set of sesamol-derived acetamides was designed, synthesized, and evaluated against monoamine oxidases (MAO-A and MAO-B) and cholinesterases (AChE and BChE) for targeting neurodegenerative diseases. Most of the tested compounds showed inhibition activity at micromolar to nanomolar ranges. The 3,4-dichoro derivative (compound <b>19</b>) was the most potent MAO-A inhibitor (IC<sub>50</sub> = 0.053 ± 0.001 µM) while the 4-methyl analog (compound <b>16</b>) emerged as a lead MAO-B inhibitor (IC<sub>50</sub> = 0.019 ± 0.001 µM) compared to the reference inhibitors clorgyline (MAO-A IC<sub>50</sub> = 0.096 ± 0.003 µM) and selegyline (MAO B IC<sub>50</sub> = 0.021 ± 0.002 µM). Further, the 2,4-dichloro analog (compound <b>20</b>) emerged as a potent dual MAO (MAO-A IC<sub>50</sub> = 0.160 ± 0.009 µM, MAO-B IC<sub>50</sub> = 0.071 ± 0.002 µM) and ChE (AChE IC<sub>50</sub> = 2.611 ± 0.086 µM and BChE IC<sub>50</sub> = 4.22 ± 0.162 µM) inhibitor. Moreover, molecular simulation studies revealed that H-bonding and hydrophobic interactions stabilize the virtual lead inhibitor-protein complex. Selected MAO-ChE inhibitors showed significant antioxidant and iron-chelation properties, suggesting their potential in treating neurological disorders characterized by impaired iron homeostasis. In summary, the structural modification attempted in the present study yielded a few nanomolar MAO (MAO-B) inhibitors and, thus, provided new insights into the linker requirements for dual MAO/ChE inhibitory properties.</p><div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":699,"journal":{"name":"Medicinal Chemistry Research","volume":"33 10","pages":"1974 - 1991"},"PeriodicalIF":2.6,"publicationDate":"2024-09-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142181141","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
This study revisits the pioneering work of Professor Neidle, and co-workers, on the crystal structure of complexes formed between groove binders and DNA sequences. The original research revealed a DNA-ligand complex consisting of a dodecanucleotide bound with Berenil [1,3-bis(4′-amidinophenyl)-triazene] an anti-trypanocidal drug. This article aims to delve deeper into the structural dynamics of this system, showcasing the role played by water molecules in stabilizing the interaction between the ligand and the DNA. With this work, we reevaluate the findings from the original crystallographic study by employing modern molecular dynamics techniques, including Supervised Molecular Dynamics (SuMD) for generating binding trajectories, Thermal Titration Molecular Dynamics for assessing unbinding events, and AquaMMapS to identify regions occupied by stationary water molecules. The study addresses a minor and a major groove binding mode and assesses their strength and specificity using TTMD simulations, generating unbinding trajectories. This comprehensive approach integrates the understanding of the interaction of this DNA-ligand complex, which originated with the valuable work of Professor Neidle, resulting in an in-depth insight into the pivotal role of water molecules with this DNA, a behavior detected and extendable even to other nucleic acid complexes.
这项研究再次回顾了 Neidle 教授及其合作者在沟槽结合剂与 DNA 序列之间形成的复合物晶体结构方面的开创性工作。最初的研究揭示了一种由十二核苷酸与抗锥虫病药物 Berenil [1,3-双(4′-脒苯基)-三氮烯] 结合而成的 DNA 配体复合物。本文旨在深入探讨这一系统的结构动力学,展示水分子在稳定配体与 DNA 之间的相互作用中所起的作用。在这项工作中,我们采用了现代分子动力学技术,包括生成结合轨迹的监督分子动力学(SuMD)、评估解结合事件的热滴定分子动力学以及识别静止水分子占据区域的 AquaMMapS,重新评估了原始晶体学研究的发现。该研究针对小沟和大沟结合模式,利用热滴定分子动力学模拟评估其强度和特异性,并生成解除结合轨迹。这种全面的方法整合了对 DNA 配体复合物相互作用的理解,这种理解源于 Neidle 教授的宝贵研究成果,它深入揭示了水分子在 DNA 中的关键作用,这种行为已被检测到,甚至可扩展到其他核酸复合物。
{"title":"A second life for the crystallographic structure of Berenil-dodecanucleotide complex: a computational revisitation thirty years after its publication","authors":"Gianluca Novello, Andrea Dodaro, Silvia Menin, Chiara Cavastracci Strascia, Mattia Sturlese, Veronica Salmaso, Stefano Moro","doi":"10.1007/s00044-024-03299-9","DOIUrl":"https://doi.org/10.1007/s00044-024-03299-9","url":null,"abstract":"<p>This study revisits the pioneering work of Professor Neidle, and co-workers, on the crystal structure of complexes formed between groove binders and DNA sequences. The original research revealed a DNA-ligand complex consisting of a dodecanucleotide bound with Berenil [1,3-bis(4′-amidinophenyl)-triazene] an anti-trypanocidal drug. This article aims to delve deeper into the structural dynamics of this system, showcasing the role played by water molecules in stabilizing the interaction between the ligand and the DNA. With this work, we reevaluate the findings from the original crystallographic study by employing modern molecular dynamics techniques, including Supervised Molecular Dynamics (SuMD) for generating binding trajectories, Thermal Titration Molecular Dynamics for assessing unbinding events, and AquaMMapS to identify regions occupied by stationary water molecules. The study addresses a minor and a major groove binding mode and assesses their strength and specificity using TTMD simulations, generating unbinding trajectories. This comprehensive approach integrates the understanding of the interaction of this DNA-ligand complex, which originated with the valuable work of Professor Neidle, resulting in an in-depth insight into the pivotal role of water molecules with this DNA, a behavior detected and extendable even to other nucleic acid complexes.</p>","PeriodicalId":699,"journal":{"name":"Medicinal Chemistry Research","volume":"30 1","pages":""},"PeriodicalIF":2.6,"publicationDate":"2024-09-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142181070","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-02DOI: 10.1007/s00044-024-03279-z
David Preciado, Wilson Cardona-Galeano, Angie Herrera-Ramírez, Andrés F. Yepes
Colorectal cancer is one of the most incident and lethal cancers in the world. The search for new compounds to treat this disease is being motivated by the occurrence of side effects and the rising in the resistance to chemotherapy. We synthesized a new class of conjugates bearing quinazolinone and melatonin which were prepared in good yields (63–93%) through one-pot three-component approach. quinazolinone/melatonin conjugates were proved against SW480 human colorectal adenocarcinoma cells and non-malignant colonic cells (NCM460). The cytotoxic and antiproliferative activities were determined through the sulforhodamine B assay. Compounds 1f, 1g and 1i–l displayed the best activity, being hybrids 1i–l the most selective against malignant cells, causing either a cytostatic and/or cytotoxic effect with evident morphological changes. Moreover, a theoretical drug-like/pharmacokinetics/toxicological study suggested that the hit-promising compounds 1i and 1j would have a great chance to advance to further preclinical studies as anti-cancer therapeutic candidate for oral oncological management. Our study evidently identified the potency of these quinazolinone/melatonin hybrids to be a prototype drug for further investigations toward novel therapeutics treatments of colorectal cancer.
{"title":"A potent therapeutic scaffold fusing quinazolinone/melatonin for future colorectal cancer interventions: design, one-pot synthesis, biological and ADME-tox modeling studies","authors":"David Preciado, Wilson Cardona-Galeano, Angie Herrera-Ramírez, Andrés F. Yepes","doi":"10.1007/s00044-024-03279-z","DOIUrl":"10.1007/s00044-024-03279-z","url":null,"abstract":"<div><p>Colorectal cancer is one of the most incident and lethal cancers in the world. The search for new compounds to treat this disease is being motivated by the occurrence of side effects and the rising in the resistance to chemotherapy. We synthesized a new class of conjugates bearing quinazolinone and melatonin which were prepared in good yields (63–93%) through one-pot three-component approach. quinazolinone/melatonin conjugates were proved against SW480 human colorectal adenocarcinoma cells and non-malignant colonic cells (NCM460). The cytotoxic and antiproliferative activities were determined through the sulforhodamine B assay. Compounds <b>1f</b>, <b>1g</b> and <b>1i–l</b> displayed the best activity, being hybrids <b>1i–l</b> the most selective against malignant cells, causing either a cytostatic and/or cytotoxic effect with evident morphological changes. Moreover, a theoretical drug-like/pharmacokinetics/toxicological study suggested that the hit-promising compounds <b>1i</b> and <b>1j</b> would have a great chance to advance to further preclinical studies as anti-cancer therapeutic candidate for oral oncological management. Our study evidently identified the potency of these quinazolinone/melatonin hybrids to be a prototype drug for further investigations toward novel therapeutics treatments of colorectal cancer.</p><div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":699,"journal":{"name":"Medicinal Chemistry Research","volume":"33 9","pages":"1698 - 1713"},"PeriodicalIF":2.6,"publicationDate":"2024-09-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s00044-024-03279-z.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142181071","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-08-28DOI: 10.1007/s00044-024-03302-3
Pulakesh Pramanik, Santanu Bhattacharya
G-quadruplexes are four-stranded non-canonical secondary structures formed by G-rich DNA and RNA sequences. They are structurally diverse and found to regulate several biological processes including DNA replication, gene transcription, and translation. The diverse role of these structures is associated with several diseases such as cancer, aging, and neurological disorders. In addition, they have emerged as a potential therapeutic target specifically in the context of drug discovery of cancer disease. Because of its significant implications in cellular biology, scientists have given excessive efforts to locate G4 regions at the genomic level through experimental sequencing procedures as well as computational methods over the last few years. The prediction of active G4 regions as well as their stability by computational methods has facilitated the drug discovery processes. In this brief report, the technological advancement in computer-aided G-quadruplex prediction has been highlighted.
G 型四联体是由富含 G 的 DNA 和 RNA 序列形成的四链非正则二级结构。它们在结构上多种多样,可调节 DNA 复制、基因转录和翻译等多个生物过程。这些结构的不同作用与癌症、衰老和神经系统疾病等多种疾病有关。此外,它们已成为癌症药物研发中的潜在治疗靶点。由于其在细胞生物学中的重要意义,科学家们在过去几年中通过实验测序程序和计算方法,在基因组水平上对 G4 区域进行了大量的定位工作。通过计算方法预测活性 G4 区域及其稳定性为药物发现过程提供了便利。在这份简短的报告中,重点介绍了计算机辅助 G 型四叠体预测方面的技术进步。
{"title":"Insights into computer-aided G-quadruplex prediction in the digital age","authors":"Pulakesh Pramanik, Santanu Bhattacharya","doi":"10.1007/s00044-024-03302-3","DOIUrl":"https://doi.org/10.1007/s00044-024-03302-3","url":null,"abstract":"<p>G-quadruplexes are four-stranded non-canonical secondary structures formed by G-rich DNA and RNA sequences. They are structurally diverse and found to regulate several biological processes including DNA replication, gene transcription, and translation. The diverse role of these structures is associated with several diseases such as cancer, aging, and neurological disorders. In addition, they have emerged as a potential therapeutic target specifically in the context of drug discovery of cancer disease. Because of its significant implications in cellular biology, scientists have given excessive efforts to locate G4 regions at the genomic level through experimental sequencing procedures as well as computational methods over the last few years. The prediction of active G4 regions as well as their stability by computational methods has facilitated the drug discovery processes. In this brief report, the technological advancement in computer-aided G-quadruplex prediction has been highlighted.</p>","PeriodicalId":699,"journal":{"name":"Medicinal Chemistry Research","volume":"54 1","pages":""},"PeriodicalIF":2.6,"publicationDate":"2024-08-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142181074","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}