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Acta Crystallographica Section B Structural Science, Crystal Engineering and Materials最新文献

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Learning from approximate periodic symmetry in organic P1 structures 从有机P1结构的近似周期对称性学习
V. Young
The article by Brock (2022) is the result of an ambitious 3+ year long project to study the occurrences of approximate symmetries in the space group P 1. Brock selected the November 2019 version of the Cambridge Structural Database (CSD; Groom et al. , 2016) where 2592 reports of organic crystal structures (based on Z , Z 0 and an R value (cid:2) 0.05) were found. Using a number of criteria this set was distilled down to 1407 Z = Z 0 > 1 and 1049 Z = Z 0 = 1. In the former group, molecules (including cations and anions) within asymmetric units were evaluated for possible approximate symmetries: 2, 2 1 , 3, 3 1 , translations, inversions or glides. Entries in the latter group were retained if some possible approximate symmetry was detected within the molecule(s). A subset of crystal structures was removed from both sets if the symmetry indicated these would be better described in a higher-symmetry space group. Brock’s conclusion is that approximate symmetry is pervasive in P 1 crystal structures.
Brock(2022)的文章是一个雄心勃勃的3年多的项目的结果,该项目旨在研究空间群p1中近似对称性的出现。Brock选择了2019年11月版本的剑桥结构数据库(CSD;Groom等人,2016),其中发现了2592份有机晶体结构报告(基于Z, z0和R值(cid:2) 0.05)。使用一些标准,该集合被提炼到1407 Z = z0 > 1和1049 Z = z0 = 1。在前一组中,不对称单元内的分子(包括阳离子和阴离子)被评估为可能的近似对称性:2,2,1,3,31,平移,反转或滑动。如果在分子内检测到一些可能的近似对称性,则保留后一组中的条目。如果对称性表明在更高对称性的空间群中可以更好地描述晶体结构的子集,则从两个集合中移除。布洛克的结论是近似对称性在p1晶体结构中普遍存在。
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引用次数: 0
Structures of Ca5(VO4)3Cl and Ca4.78(1)Na0.22(PO4)3Cl0.78: positions of channel anions and repulsion on the anion in apatite-type compounds Ca5(VO4)3Cl和Ca4.78(1)Na0.22(PO4)3Cl0.78的结构:通道阴离子的位置和对阴离子的排斥力
Mimiko Matsuura, H. Okudera
Single crystal specimens of apatite-type compounds Ca5(VO4)3Cl and Ca4.78 (1)Na0.22(PO4)3Cl0.78 were prepared with a flux-growth technique and their structures were examined with single-crystal X-ray diffraction. The anion channel is defined by a face-sharing array of nearly regular Ca octahedra, which run along c, together with flat O3 trigonal antiprisms that are concentric with the Ca octahedra and highly oblate in [001]. The position of the channel anion in Ca5(VO4)3Cl is split into two at [0, 0, ±0.1691 (6)] with half occupancies. Dynamic disorder among these two positions is suggested from a saddle-shaped electron density distribution through the Ca regular triangle, i.e. the shared face of the Ca octahedra at z = ¼. The position of Cl− was too close to Ca2+ under bond-valence consideration. This is due to repulsion on Cl− from the flat O3 trigonal antiprism which is located at z = 0, namely, in between pairs of split Cl site positions. Ca4.78 (1)Na0.22(PO4)3Cl0.78 crystallizes as a disordered hexagonal structure in which the crystallographic pattern is not an intermediate state but a projection of two distinct halves of the monoclinic pattern [doubled in b; Mackie, Elliot & Young (1972). Acta Cryst. B28, 1840–1848] in one hexagonal cell. In spite of quite different environments, the bond-valence sums for Cl− in these structures are large and similar to each other. The repulsion between O2− and Cl− and a demand for keeping Ca2+ and Cl− apart are balanced at the positions where bond-valence sums for Cl− are around 1.2.
采用通量生长法制备了磷灰石型化合物Ca5(VO4)3Cl和Ca4.78 (1)Na0.22(PO4)3Cl0.78的单晶样品,并用x射线单晶衍射对其结构进行了表征。阴离子通道由沿c方向排列的几乎规则的Ca八面体组成的面共享阵列以及与Ca八面体同心且在[001]中高度扁圆的平面O3三角形反棱镜定义。Ca5(VO4)3Cl中通道阴离子的位置在[0,0,±0.1691(6)]处被一分为二,占据率为一半。通过Ca正则三角形(即Ca八面体在z =¼处的共享面)的鞍状电子密度分布,可以推测出这两个位置之间的动态无序性。考虑到键价,Cl−的位置过于接近Ca2+。这是由于位于z = 0的平面O3三角形反棱镜对Cl−的排斥作用,即在分裂的Cl位对之间。Ca4.78 (1)Na0.22(PO4)3Cl0.78结晶为无序的六方结构,其晶体模式不是中间状态,而是单斜模式的两个不同半的投影[在b中翻倍];Mackie, Elliot & Young(1972)。Acta结晶。[B28, 1840-1848]在一个六边形的格子里。尽管环境完全不同,但这些结构中Cl−的键价和都很大,而且彼此相似。O2 -和Cl -之间的斥力以及保持Ca2+和Cl -分开的需求在Cl -的键价和约为1.2的位置上达到平衡。
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引用次数: 0
The potential of dispersion-corrected density functional theory calculations for distinguishing between salts and cocrystals 色散校正密度泛函理论计算区分盐和共晶的潜力
M. Hušák, Simona Šajbanová, J. Klimeš, A. Jegorov
Validation of a method for distinguishing between salts and cocrystals based on dispersion-corrected density functional theory is presented. Existing related works (van de Streek & Neumann, 2010; LeBlanc et al., 2018) indicate that this approach is problematic and leads to incorrect results in multiple situations. The method suggested here is based on the geometry optimization of an artificially constructed wrong structure (hydrogen atom placed in salt position near the potential acceptor for cocrystals and vice versa cocrystal position with hydrogen atom placed near the potential donor of the salts). The verification of the method is based on comparison of the results with an experimentally confirmed correct hydrogen position. Calculations were performed on 173 selected structures of salts and 96 cocrystals with ΔpKa in the critical 〈−1, 4〉 range. The range was chosen to test the method on the most problematic structures. When the artificial wrong model did not converge to the correct one (salt to cocrystal and vice versa), it was tested whether the correct model converged to the correct one in addition. The results confirmed that the most widely used functional (PBE) tends to generate false salt results. All salts converged to the salt from cocrystal initial models. Sixteen cocrystals showed local energy minima for both the salt and cocrystal states. Eighteen cocrystals always converged to salt. Rules were identified under which the results can be considered reliable: when a cocrystal starting model converges to cocrystal, the structure is certainly cocrystal. When both the cocrystal and salt models converge to salt for a long hydrogen-bond (longer than 2.613 Å) the structure is most likely salt. For short hydrogen bonds it is not possible to distinguished reliably between salt and cocrystal using the dispersion-corrected PBE functional. Additional calculations were performed with more advanced functionals for 18 problematic structures detected in the screening as well as for four more mentioned in the literature. The results show that the rSCAN functional (Bartók & Yates, 2019) improves the agreement with the experiment. Further improvement was observed by using hybrid functionals (PBE0, PBE50), which were tested on structures that gave incorrect results with rSCAN. The described method for distinguishing salts from cocrystals can be useful for enhancing the information given by structure solutions from powder, the verification of structure solutions from single crystals and studies related to crystal structure prediction.
提出了一种基于色散校正密度泛函理论区分盐和共晶的方法。现有相关作品(van de Streek & Neumann, 2010;LeBlanc等人,2018)表明这种方法是有问题的,在多种情况下会导致不正确的结果。本文提出的方法是基于人为构造的错误结构的几何优化(将氢原子置于盐位,靠近盐的潜在受体,反之亦然,将氢原子置于盐的潜在供体附近的共晶位置)。通过与实验证实的正确氢位置的比较,验证了该方法的正确性。计算了173种盐和96种共晶的结构,ΔpKa在临界< - 1,4 >范围内。选择该范围是为了在最有问题的结构上测试该方法。当人工错误模型没有收敛到正确模型(盐到共晶,反之亦然)时,再测试正确模型是否收敛到正确模型。结果证实,最广泛使用的功能(PBE)倾向于产生假盐结果。所有的盐都收敛于共晶初始模型的盐。16个共晶在盐态和共晶态均表现出局域能量最小值。18个共晶总是会聚成盐。确定了结果可靠的规则:当共晶起始模型收敛于共晶时,结构肯定是共晶。当共晶模型和盐模型都收敛为长氢键(大于2.613 Å)的盐时,结构最可能是盐。对于短氢键,不可能使用色散校正的PBE功能可靠地区分盐和共晶。对筛选中检测到的18个问题结构以及文献中提到的另外4个问题结构进行了更高级的功能计算。结果表明,rSCAN函数(Bartók & Yates, 2019)提高了与实验的一致性。通过使用混合功能(PBE0, PBE50)观察到进一步的改善,这些功能在rSCAN给出错误结果的结构上进行了测试。所描述的区分盐和共晶的方法可用于增强粉末结构溶液给出的信息、单晶结构溶液的验证以及与晶体结构预测相关的研究。
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引用次数: 0
Lattice defects in quinacridone 喹吖酮的晶格缺陷
D. Brey, Barbara Scherer, M. Schmidt
Various lattice defects in the αI-phase of quinacridone (C20H12N2O2) were simulated using lattice-energy minimizations, including vacancies, stacking faults, screw and edge dislocations, twinning and orientational faults. Twinning and orientational faults of entire chains were calculated to occur most frequently.
采用晶格能最小化方法模拟了喹吖酮(C20H12N2O2) α - i相中的各种晶格缺陷,包括空位、层错、螺旋位错和边缘位错、孪晶和取向错误。计算结果表明,整个链条的孪生和定向故障发生频率最高。
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引用次数: 0
The effect of hydrostatic compression on the crystal structure of glycinium phosphite 静水压缩对亚磷酸甘氨酸晶体结构的影响
N. Bogdanov, D. Korabel'nikov, I. Fedorov, B. Zakharov, E. Boldyreva
The crystal structure of glycinium phosphite (GPI) was studied in the pressure range from ambient to 6.5 GPa at 293 K using single-crystal X-ray diffraction. The changes in the unit-cell volume and parameters were continuous and anisotropic. The major compression was observed normal to the direction of the spontaneous polarization that occurs in this structure during a ferroelectric phase transition on cooling, whereas the structural compression along the b axis coinciding with the 21 axis was almost zero. The effect of pressure on the hydrogen bonds linking the H2PO3 tetrahedra into zigzag chains along the c axis was different from that on the hydrogen bonds connecting the glycinium cations with the H2PO3 tetrahedra in the (b × c) plane. The discontinuous changes in the geometries of selected hydrogen bonds at about 1.21 GPa may be evidence of a phase transition, e.g. into an ordered ferroelectric phase (with ordered positions of protons). The anisotropy of compression of GPI in the ferroelectric state (at 0 K) was studied using DFT calculations taking into account dispersive van der Waals interactions. The calculations predicted negative linear compressibility along the b axis.
用单晶x射线衍射研究了室温~ 6.5 GPa、293 K温度下亚磷酸甘氨酸(GPI)的晶体结构。细胞体积和参数的变化是连续的、各向异性的。在冷却时发生铁电相变时,该结构的主要压缩方向为自发极化方向,而沿b轴与21轴重合的结构压缩几乎为零。压力对H2PO3四面体沿c轴形成之字形链的氢键的影响与对(b × c)平面上甘氨酸阳离子与H2PO3四面体连接的氢键的影响不同。在约1.21 GPa时,所选氢键几何形状的不连续变化可能是相变的证据,例如进入有序的铁电相(质子位置有序)。考虑色散范德华相互作用,利用DFT计算研究了GPI在铁电态(0 K)下压缩的各向异性。计算预测沿b轴的线性压缩性为负。
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引用次数: 1
Heterocyclic 1,3-diazepine-based thiones and selones as versatile halogen-bond acceptors 杂环1,3-二氮卓类硫酮和硒酮作为多用途卤素键受体
Arianna C. Ragusa, Andrew J. Peloquin, Marjan M. Shahani, Keri N. Dowling, J. Golen, C. McMillen, D. Rabinovich, W. Pennington
Utilizing the N-heterocyclic chalcogenones hexahydro-1,3-bis(2,4,6-trimethylphenyl)-2H-1,3-diazepine-2-thione (SDiazMesS) and hexahydro-1,3-bis(2,4,6-trimethylphenyl)-2H-1,3-diazepine-2-selone (SDiazMesSe) as halogen-bond acceptors, 24 new cocrystals were prepared. The solid-state structures of the parent molecules were also determined, along with those of their acetonitrile solvates.
利用n-杂环硫基因六氢-1,3-二(2,4,6-三甲基苯基)- 2h -1,3-二氮卓-2-硫酮(SDiazMesS)和六氢-1,3-二(2,4,6-三甲基苯基)- 2h -1,3-二氮卓-2-selone (SDiazMesSe)作为卤素键受体,制备了24个新的共晶。测定了母体分子及其乙腈溶剂化物的固态结构。
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引用次数: 0
Evolution of microstructure and crystallographic texture throughout the rolling process of AA3104 AA3104轧制过程中显微组织和晶体织构的演变
S. Papadopoulou, Fotios Tsiolis, E. Gavalas, S. Papaefthymiou
The metallic components are manufactured through several thermomechanical processes. Each selected procedure has multiple targets. The first target is to obtain the required dimensional criteria and second, to achieve the ideal mechanical response toward the application. This is currently accomplished through years of knowhow combined with an academic background of materials science and engineering. Since metals are polycrystalline materials, the several rotations of the crystals, the preferred orientation also known as texture, and their interactions, are crucial characteristics that are directly correlated to the final response of the material, and one could apprehend its thermomechanical prehistory as well as predict is behavior. Different atomic arrangements act differently texture-wise therefore in the current review article, the evolution of the microstructure and the crystallographic texture through the thermomechanically rolling process especially of Al alloys for packaging applications is analyzed. The crystallographic texture evolution in 3xxx Al alloys in different processing routes is presented and compared to the anisotropic effects occurring during deep drawing. The earing phenomena in Al alloys are correlated to the produced texture and therefore their understanding is crucial in order to highlight the importance of texture control throughout the thermomechanical process.
金属部件是通过几个热机械过程制造的。每个选择的过程都有多个目标。第一个目标是获得所需的尺寸标准,第二个目标是实现对应用的理想力学响应。目前,这是通过多年的专业知识与材料科学和工程的学术背景相结合而完成的。由于金属是多晶材料,晶体的几个旋转,首选取向,也称为纹理,以及它们之间的相互作用,是直接关系到材料最终响应的关键特征,人们可以理解它的热力学史前以及预测它的行为。不同的原子排列方式具有不同的织构,因此本文主要分析了热轧过程中特别是包装用铝合金的显微组织和晶体织构的演变。研究了3xxx铝合金在不同加工路线下的晶体织构演变,并与拉深时的各向异性效应进行了比较。铝合金中的耳形现象与所产生的织构有关,因此了解这些现象对于强调整个热机械过程中织构控制的重要性至关重要。
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引用次数: 0
One-dimensional diffuse scattering of 1,3-di(tert-butyl)cyclopentadienyl pentaphosphaferrocene modelled with closed-form expressions 1,3-二(叔丁基)环戊二烯基五磷二茂铁的一维扩散散射模拟
B. Stöger, E. Peresypkina, A. Virovets
The diffuse scattering of 1,3-di(tert-butyl)cyclopentadienyl pentaphosphaferrocene (Cp′′FeP5) is modelled with closed-form expressions derived from a growth model with the range of interactions (reichweite) s = 2.
1,3-二(叔丁基)环戊二烯基五磷二茂铁(Cp " FeP5)的扩散散射用生长模型(相互作用范围(reichweite) s = 2)导出的封闭表达式来模拟。
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引用次数: 0
Engineering the band gap and optical properties of a two-dimensional molybdenum carbon fluoride MXene 设计二维氟化钼碳MXene的带隙和光学性质
Doan Thi Kieu Anh, Luong Viet Mui, P. H. Minh, N. T. Binh, M. Cadatal-Raduban
Using first-principles density functional theory, the electronic and optical properties of monolayer and multilayer nanosheets of molybdenum carbon fluoride (Mo2CF2), a two-dimensional (2D) transition-metal carbide MXene, were investigated. The unique behavior of its optical properties along with the ability to control its electronic and optical properties enhances the potential of 2D Mo2CF2 for various applications in the fields of electronics and energy storage.
利用第一性原理密度泛函理论,研究了二维过渡金属碳化物MXene单层和多层氟化碳钼(Mo2CF2)纳米片的电子和光学性质。其独特的光学特性以及控制其电子和光学特性的能力增强了2D Mo2CF2在电子和储能领域的各种应用潜力。
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引用次数: 0
Framboids. By David Rickard. Oxford University Press, 2021. Hardcover, pp. xxv+334. Price GBP 64.00. ISBN ISBN 978019008 0112. 微球粒。大卫·里卡德著。牛津大学出版社,2021年。精装版,第xxv+334页。价格为64.00英镑。Isbn Isbn 978019008 0112。
Massimo Nespolo
Framboids are microscopic, subspherical aggregates of pyrite microcrystals, where the sulfide is mainly microbiological in origin: a framboid may contain fewer than 100 or more than 500 000 microcrystals. The sizes of the microcrystals span however a much smaller interval. Framboids are ubiquitous but require unique conditions to form. The book by David Rickard, world authority on sulfide chemistry, geochemistry, geomicro-biology, biogeochemistry and ore geology, opens the doors of this fascinating world. The importance of these minuscule aggregates cannot be underestimated, if we consider that pyrite nanoparticles contribute a significant component of the nanoparticulate budget of the oceans [ . . . ] and may contribute up to 10% of the dissolved iron emanating from black smoker hydrothermal vents (page 109)
树状体是黄铁矿微晶体的微观亚球形聚集体,其中硫化物主要来自微生物:一个树状体可能含有少于100个或超过50万个微晶体。然而,微晶体的大小跨度要小得多。树状体无处不在,但需要独特的条件才能形成。大卫·里卡德是硫化物化学、地球化学、地球微生物生物学、生物地球化学和矿石地质学方面的世界权威,他的这本书打开了这个迷人世界的大门。如果我们考虑到黄铁矿纳米颗粒在海洋的纳米颗粒预算中占有重要的组成部分,那么这些微小聚集体的重要性是不可低估的[…]],并可能贡献高达10%的溶解铁从黑烟热液喷口散发(第109页)。
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引用次数: 0
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Acta Crystallographica Section B Structural Science, Crystal Engineering and Materials
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