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Insertion of 3D DNA Origami Nanopores into Block Copolymer Vesicles 嵌段共聚物小泡中三维DNA折纸纳米孔的插入
Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2022-06-13 DOI: 10.1002/syst.202200009
Dr. Saskia Groeer, Dr. Martina Garni, Dr. Avik Samanta, Prof. Dr. Andreas Walther

Block copolymer-based polymersomes are important building blocks for the bottom-up design of protocells and are considered advantageous over liposomes due to their higher mechanical stability and chemical versatility. Endowing both types of vesicles with capabilities for transmembrane transport is important for creating nanoreactor functionality and has been achieved by insertion of protein nanopores, even into comparably thick polymersome membranes. Still, the design space for protein nanopores is limited and higher flexibility might be accessible by de novo design of DNA nanopores, which have thus far been limited largely to liposome systems. Here, we introduce the successful insertion of two different 3D DNA origami nanopores into PMOXA-b-PDMS-b-PMOXA polymersomes, and confirm pore formation by dye influx studies and microscopy. This research thus opens the further design space of this versatile class of large DNA origami nanopores for polymersome-based functional protocells.

基于嵌段共聚物的聚合体是自下而上设计原始细胞的重要组成部分,由于其更高的机械稳定性和化学通用性,被认为比脂质体更有优势。赋予这两种类型的囊泡跨膜运输能力对于创建纳米反应器功能非常重要,并且通过插入蛋白质纳米孔来实现,即使是在相当厚的聚合体膜中。尽管如此,蛋白质纳米孔的设计空间是有限的,更高的灵活性可能通过DNA纳米孔的重新设计来实现,迄今为止,DNA纳米孔主要局限于脂质体系统。在这里,我们成功地将两种不同的3D DNA折纸纳米孔插入到PMOXA-b-PDMS-b-PMOXA聚合体中,并通过染料流入研究和显微镜证实了孔的形成。因此,这项研究为基于聚合体的功能原始细胞的多用途类大DNA折纸纳米孔的进一步设计开辟了空间。
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引用次数: 3
Front Cover: Complex Coacervation and Compartmentalized Conversion of Prebiotically Relevant Metabolites (ChemSystemsChem 4/2022) 封面:益生元相关代谢物的复杂凝聚和区隔转化(chemsystemscheme 4/2022)
Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2022-06-10 DOI: 10.1002/syst.202200018
Iris B. A. Smokers, Merlijn H. I. van Haren, Tiemei Lu, Dr. Evan Spruijt

The Front Cover shows a light microscopy image of metabolite coacervates. A graphic representation of a metabolic network is projected over the coacervate protocells, containing illustrations that depict different steps in the emergence of life on Earth. Small molecules react to form more complex molecules, which eventually partake in reaction networks. This work shows how metabolites present in these early networks are able to phase separate and form stable coacervate droplets. The coacervates are able to compartmentalize metabolites and increase reaction rates, providing an attractive model for the first generation of protocells. More information can be found in the Research Article by Evan Spruijt and co-workers.

封面显示了代谢物凝聚物的光镜图像。代谢网络的图形表示投影在密集的原始细胞上,包含描绘地球上生命出现的不同步骤的插图。小分子反应形成更复杂的分子,最终参与到反应网络中。这项工作显示了存在于这些早期网络中的代谢物如何能够相分离并形成稳定的凝聚液滴。凝聚体能够分隔代谢物并增加反应速率,为第一代原始细胞提供了一个有吸引力的模型。更多信息可以在Evan sprujt和同事的研究文章中找到。
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引用次数: 0
Complex Coacervation and Compartmentalized Conversion of Prebiotically Relevant Metabolites 益生元相关代谢物的复杂凝聚和区隔转化
Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2022-06-10 DOI: 10.1002/syst.202200017
Iris B. A. Smokers, Merlijn H. I. van Haren, Tiemei Lu, Dr. Evan Spruijt

The front cover artwork is provided by the Spruijt group from the Radboud University in Nijmegen. The image shows a metabolic reaction pathway projected over a microscopy image of metabolite coacervates. Read the full text of the Research Article at 10.1002/syst.202200004.

封面艺术作品由奈梅亨内梅亨大学的sprujt小组提供。该图像显示代谢反应途径投影在代谢物凝聚体的显微镜图像上。阅读研究论文全文:10.1002/ system .202200004。
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引用次数: 0
Mackinawite-Supported Reduction of C1 Substrates into Prebiotically Relevant Precursors mackinawit支持的C1底物还原成益生元相关前体
Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2022-06-05 DOI: 10.1002/syst.202200010
Dr. Mario Grosch, Dr. Martin T. Stiebritz, Dr. Robert Bolney, Mario Winkler, Eric Jückstock, Hannah Busch, Sophia Peters, Dr. Alexander F. Siegle, Prof. Joris van Slageren, Prof. Markus Ribbe, Prof. Yilin Hu, Prof. Oliver Trapp, Prof. Christian Robl, Prof. Wolfgang Weigand

Mackinawite has unique structural properties and reactivities when compared to other iron sulfides. Herein we provide evidence for the mackinawite-supported reduction of KCN into various reduced compounds under primordial conditions. We proposed a reaction mechanism based on the nucleophilic attack by the deprotonated mackinawite -SH surface groups at the carbon atom of HCN. The initial binding of the substrate and the subsequent reduction events are supported by DFT calculations and further experiments using other substrates, such as KSCN, KOCN and CS2. Until now, conversion of CN into CH4 and NH3 has been limited to nitrogenase cofactors or molecular Fe-CN complexes. Our study provides evidence for mackinawite-supported cleavage of the C−N bond under ambient conditions, which opens new avenues for investigation of other substrates for mackinawite-supported reactions while shedding light on the relevance of this type of reaction to the origin of life on Earth.

与其他硫化铁相比,Mackinawite具有独特的结构性质和反应活性。在这里,我们提供了在原始条件下mackinawite支持的KCN还原成各种还原性化合物的证据。我们提出了一种基于去质子化的mackinawite -SH表面基团对HCN碳原子亲核攻击的反应机理。底物的初始结合和随后的还原事件得到DFT计算和使用其他底物(如KSCN、KOCN和CS2)的进一步实验的支持。到目前为止,CN−转化为CH4和NH3仅限于氮酶辅助因子或分子Fe-CN配合物。我们的研究为在环境条件下麦金酸支持的C−N键的裂解提供了证据,这为研究麦金酸支持的反应的其他底物开辟了新的途径,同时揭示了这类反应与地球上生命起源的相关性。
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引用次数: 3
Generation of Chemobrionic Jellyfish-Like Structures That Mechanically Divide and Exhibit Biomimetic “Symbiosis” 化学仿生水母样结构的产生,机械分裂并表现出仿生“共生”
Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2022-05-13 DOI: 10.1002/syst.202200001
Georgios Angelis, Maria-Eleni Katsanou, Alexandros Giannopoulos-Dimitriou, Dr. Ioannis S. Vizirianakis, Dr. Georgios Pampalakis

Addition of CaCl2 into a highly alkaline phosphate buffer results in the generation of submerged transparent chemobrionic bubbles mimicking jellyfish that are stable and malleable. A compartmentalized O2-generating reaction triggered the growth of regular vertical chemical gardens from the bubble through a gas micro-rocket propelled mechanism. The bubbles can mechanically separate to yield two daughter bubbles in a process reminiscent of cytokinesis or natural jellyfish regeneration, and then re-grow through new injection of CaCl2. Finally, loading of E. coli bacteria genetically engineered to exert green fluorescence inside the bubbles was demonstrated in a biomimetic analogue of “symbiosis”.

在高碱性磷酸盐缓冲液中加入CaCl2,会产生类似水母的透明化学离子气泡,这些气泡稳定且具有延展性。一个分隔的臭氧生成反应触发了常规垂直化学花园的生长,从气泡通过微型气体火箭推进机制。这些气泡可以机械分离,产生两个子气泡,这一过程让人想起细胞质分裂或天然水母再生,然后通过注入新的CaCl2重新生长。最后,在“共生”的仿生学模拟中演示了大肠杆菌基因工程在气泡内施加绿色荧光的负载。
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引用次数: 0
Direct Quantification of Ligand-Induced Lipid and Protein Microdomains with Distinctive Signaling Properties** 配体诱导的具有独特信号特性的脂质和蛋白质微域的直接定量研究**
Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2022-04-26 DOI: 10.1002/syst.202200011
Dr. Daniel Wirth, Dr. Michael D. Paul, Prof. Elena B. Pasquale, Prof. Kalina Hristova

Lipid rafts are ordered lipid domains that are enriched in saturated lipids, such as the ganglioside GM1. While lipid rafts are believed to exist in cells and to serve as signaling platforms through their enrichment in signaling components, they have not been directly observed in the plasma membrane without treatments that artificially cluster GM1 into large lattices. Here, we report that microscopic GM1-enriched domains can form in the plasma membrane of live mammalian cells expressing the EphA2 receptor tyrosine kinase in response to its ligand ephrinA1-Fc. The GM1-enriched microdomains form concomitantly with EphA2-enriched microdomains. To gain insight into how plasma membrane heterogeneity controls signaling, we quantify the degree of EphA2 segregation and study initial EphA2 signaling steps in both EphA2-enriched and EphA2-depleted domains. By measuring dissociation constants, we demonstrate that the propensity of EphA2 to oligomerize is similar in EphA2-enriched and -depleted domains. However, surprisingly, EphA2 interacts preferentially with its downstream effector SRC in EphA2-depleted domains. The ability to induce microscopic GM1-enriched domains in live cells using a ligand for a transmembrane receptor will give us unprecedented opportunities to study the biophysical chemistry of lipid rafts.

脂筏是有序的脂质结构域,富含饱和脂质,如神经节苷脂GM1。虽然脂筏被认为存在于细胞中,并通过富集信号成分作为信号传导平台,但如果没有人工将GM1聚集成大晶格的处理,它们在质膜中并未被直接观察到。在这里,我们报道了微观的gm1富集结构域可以在活的哺乳动物细胞的质膜上形成,表达EphA2受体酪氨酸激酶响应其配体ephrinA1-Fc。富含gm1的微域与富含epha2的微域同时形成。为了深入了解质膜异质性如何控制信号传导,我们量化了EphA2分离的程度,并研究了EphA2富集和EphA2缺失结构域中EphA2的初始信号传导步骤。通过测量解离常数,我们证明EphA2的寡聚倾向在EphA2富集和缺失的结构域是相似的。然而,令人惊讶的是,EphA2优先与EphA2缺失区域的下游效应物SRC相互作用。使用跨膜受体配体在活细胞中诱导微观gm1富集结构域的能力将为我们研究脂筏的生物物理化学提供前所未有的机会。
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引用次数: 0
Spontaneous Formation of Prebiotic Compartment Colonies on Hadean Earth and Pre-Noachian Mars 冥古宙地球和前诺亚宙火星上的生命前隔间殖民地的自发形成
Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2022-04-22 DOI: 10.1002/syst.202200012
Dr. Elif S. Köksal, Dr. Inga Põldsalu, Prof. Henrik Friis, Prof. Stephen J. Mojzsis, Prof. Martin Bizzarro, Prof. Irep Gözen

The front cover artwork is provided by İrep Gözen group at the University of Oslo. The image shows primitive cell-like compartments which have spontaneously emerged from a crack in rock-forming mineral oligoclase. Read the full text of the Article at 10.1002/syst.202100040.

封面艺术作品由奥斯陆大学İrep Gözen小组提供。这张照片显示了原始的细胞状隔室,这些隔室是从形成岩石的矿物寡晶岩的裂缝中自发产生的。阅读全文:10.1002/ system .202100040
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引用次数: 0
Front Cover: Spontaneous Formation of Prebiotic Compartment Colonies on Hadean Earth and Pre-Noachian Mars (ChemSystemsChem 3/2022) 封面:冥古宙地球和前诺亚宙火星上的生命前隔间殖民地的自发形成(chemsystemscheme 3/2022)
Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2022-04-22 DOI: 10.1002/syst.202200013
Dr. Elif S. Köksal, Dr. Inga Põldsalu, Prof. Henrik Friis, Prof. Stephen J. Mojzsis, Prof. Martin Bizzarro, Prof. Irep Gözen

The Front Cover shows primitive cell-like compartments which have spontaneously emerged from a crack in rock-forming mineral oligoclase. More information can be found in the Article by Irep Gözen and co-workers.

封面上显示了原始的细胞状隔室,这些隔室是从形成岩石的矿物寡晶岩的裂缝中自发出现的。更多信息可以在Irep Gözen及其同事的文章中找到。
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引用次数: 0
Spontaneous and Driven Growth of Multicellular Lipid Compartments to Millimeter Size from Porous Polymer Structures** 多细胞脂质隔室从多孔聚合物结构自发和驱动生长到毫米大小**
Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2022-04-19 DOI: 10.1002/syst.202200006
Prof. Shin-ichiro M. Nomura, Ryo Shimizu, Dr. Richard James Archer, Dr. Gen Hayase, Prof. Taro Toyota, Prof. Richard Mayne, Prof. Andrew Adamatzky

This report describes a method to obtain multicellular shaped compartments made by lipids growing from a sponge-like porous structure. Each compartment is several tens of micrometers in diameter and separated by membranes comprised of phospholipid and amphipathic molecules. The multi-compartment structure spontaneously grew to a millimeter scale, driven by an ionic concentration difference between the interior and exterior environments of the sponge. These compartments can also easily incorporate hydrophilic species as a well as smaller materials such as liposomes. Additionally, we showed that mechanical squeezing of the sponge was also effective in producing multicellular bodies. These simple methods to obtain large-scale multicellular compartment of lipid membrane will help future designs and trials of chemical communications on artificial cells.

本报告描述了一种方法,以获得多细胞形状的室由脂类生长的海绵状多孔结构。每个隔室直径几十微米,由磷脂和两亲分子组成的膜隔开。在海绵内部和外部环境的离子浓度差异的驱动下,多室结构自发地生长到毫米尺度。这些隔室也可以很容易地纳入亲水性物质以及较小的物质,如脂质体。此外,我们发现海绵的机械挤压也有效地产生多细胞体。这些获得大规模多细胞脂膜隔室的简单方法将有助于未来在人造细胞上进行化学通讯的设计和试验。
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引用次数: 3
Macromolecular Crowding and Intrinsically Disordered Proteins: A Polymer Physics Perspective 高分子拥挤和内在无序的蛋白质:一个高分子物理学的观点
Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2022-04-19 DOI: 10.1002/syst.202100051
Jasmine Cubuk, Dr. Andrea Soranno

The cell is a crowded environment where a relevant fraction of the available space is occupied by proteins, nucleic acids, and metabolites. Here we discuss recent advancements in the understanding of crowding effects on intrinsically disordered proteins. Differently from their structured counterparts, these proteins do not adopt a stable three-dimensional structure and remain flexible and dynamic in solution. The physics of polymers and colloids provides a framework to interpret how crowding modulates conformations, dynamics, and interactions of disordered proteins. Flory-Huggins models enable rationalizing the different degree of compaction induced by crowding agents in terms of depletion interactions. The same interactions modulate the diffusion of the disordered proteins in a crowded milieu and the association and dissociation rates when interacting with a ligand. Altogether, this theoretical framework provides new insights into the interpretation of the effects of the cellular environment on disordered proteins.

细胞是一个拥挤的环境,其中可用空间的相关部分被蛋白质、核酸和代谢物所占据。在这里,我们讨论了最近在拥挤效应对内在无序蛋白质的理解的进展。与结构蛋白质不同,这些蛋白质不采用稳定的三维结构,在溶液中保持灵活和动态。聚合物和胶体的物理学为解释拥挤如何调节无序蛋白质的构象、动力学和相互作用提供了一个框架。Flory-Huggins模型能够根据耗竭相互作用来合理化拥挤因子引起的不同程度的压实。同样的相互作用调节无序蛋白质在拥挤环境中的扩散,以及与配体相互作用时的结合和解离率。总之,这一理论框架为解释细胞环境对无序蛋白质的影响提供了新的见解。
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引用次数: 13
期刊
ChemSystemsChem
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