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Front Cover: Polylysine-Coated Surfaces Drive Competition in Chemical Reaction Networks to Enable Molecular Information Processing (ChemSystemsChem 1/2024) 封面:聚赖氨酸涂层表面推动化学反应网络竞争以实现分子信息处理(ChemSystemsChem 1/2024)
Pub Date : 2023-12-13 DOI: 10.1002/syst.202300053
A. Hazal Koyuncu, Dr. Jacopo Movilli, Dr. Sevil Sahin, Dmitrii V. Kriukov, Prof. Jurriaan Huskens, Dr. Albert S. Y. Wong

The Front Cover depicts a microfluidic channel with multilayer polylysine surfaces, which provide the potential to bestow an acid–base equilibrium with the capacity of signal transduction. Cover design by Niels van der Velde (University of Twente, NL). More information can be found in the Research Article by Jurriaan Huskens, Albert S. Y. Wong, and co-workers.

封面描绘的是一个具有多层聚赖氨酸表面的微流体通道,它具有赋予酸碱平衡以信号转导能力的潜力。封面设计:Niels van der Velde(荷兰屯特大学)。更多信息请参阅研究文章,作者:Jurriaan Huskens、Albert S.Y.Wong 及合作者的研究文章中。
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引用次数: 0
Crown Ether Active Template Synthesis of Rotaxanes** 冠醚活性模板合成轮烷
Pub Date : 2023-12-07 DOI: 10.1002/syst.202300048
Dr. Stephen D. P. Fielden

Rotaxanes are interlocked molecules that consist of a macrocycle encircling a stoppered thread. The ability to control relative component positions makes rotaxanes ideal building blocks for constructing functional and responsive molecular machines. Despite the potential of rotaxanes, their challenging synthesis limits their application. One approach to construct rotaxanes is to use an active template synthesis, where a reaction that forms the thread is accelerated in the cavity of a macrocycle. An emerging method of active template synthesis that exploits the ability of crown ether macrocycles to accelerate simple organic reactions is discussed herein. Crown ether active template synthesis (CEATS) permits the rapid and simple synthesis of rotaxanes containing a wide range of functionality. Integrating rotaxane formation with chemical reaction networks has permitted the construction of molecular machines. The simplification of rotaxane synthesis will facilitate their widespread study and application.

轮烷是一种环锁的分子,由一个大环围绕着一根被塞住的线组成。控制相对组分位置的能力使轮烷成为构建功能和响应性分子机器的理想构建块。尽管轮烷具有潜力,但其复杂的合成限制了其应用。构建轮烷的一种方法是使用活性模板合成,其中形成线程的反应在大环的腔中加速。本文讨论了一种利用冠醚大环加速简单有机反应的活性模板合成新方法。冠醚活性模板合成(CEATS)允许快速和简单地合成具有广泛功能的轮烷。将轮烷的形成与化学反应网络相结合,使分子机器的构建成为可能。轮烷合成方法的简化将有利于其广泛的研究和应用。
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引用次数: 0
Dissipative Cyclic Reaction Networks: Mechanistic Insights into a Minor Enantiomer Recycling Process 耗散循环反应网络:小对映体回收过程的机理启示
Pub Date : 2023-11-27 DOI: 10.1002/syst.202300045
Dr. Cristiana Margarita, Dr. Anna Laurell Nash, David A. Ahlstrand, Prof. Dr. Mårten S. G. Ahlquist, Prof. Dr. Ola F. Wendt, Dr. Linda Fransson, Prof. Dr. Christina Moberg

An analysis of an out-of-equilibrium cyclic reaction network which continuously converts a minor undesired product enantiomer to the desired major enantiomer by irreversible addition of chemical fuel and irreversible elimination of spent fuel is presented. The reaction network is maintained as long as fuel is added; interrupted fuel addition drives the system towards equilibrium, but the cyclic process restarts upon resumed fuel addition, as demonstrated by three consecutive fuel cycles. The process is powered by the hydrolysis of methyl cyanoformate to HCN and monomethyl carbonic acid, which decomposes to CO2 and MeOH. The time it takes to reach steady state depends on the rate of conversion of the fuel and decreases with increased conversion rate. Three catalysts, one metal catalyst and two enzymes, together constitute an efficient regulation system allowing control of the forward, backward and waste-forming steps, thereby assuring the production of high yields of products with high enantiopurity.

本文分析了一个失去平衡的循环反应网络,该网络通过不可逆地添加化学燃料和不可逆地消除乏燃料,不断地将次要的不想要的产品对映体转化为所需的主要对映体。只要添加燃料,反应网络就会保持不变;中断添加燃料会使系统趋于平衡,但循环过程会在重新添加燃料后重新启动,连续三次燃料循环证明了这一点。该过程的动力来自氰基甲酸甲酯水解成 HCN 和碳酸一甲酯,碳酸一甲酯分解成 CO2 和 MeOH。达到稳定状态所需的时间取决于燃料的转化率,并随着转化率的增加而减少。三种催化剂、一种金属催化剂和两种酶共同构成了一个高效的调节系统,可以控制前向、后向和废物形成步骤,从而确保生产出高产率和高对映纯度的产品。
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引用次数: 0
Instructing Liquid-Liquid Phase Separation Inside Membranous Protocells 在膜原生细胞内指导液-液相分离
Pub Date : 2023-11-23 DOI: 10.1002/syst.202300040
Xintao Lv, Jiawei Liu, Peiyong Song, Prof. Li Zhao, Prof. Yiyang Lin

The bottom-up fabrication of compartmentalized cell-like entities represents a promising avenue for reconstituting hierarchical organization within cells and emulating life-like behaviors. Integrating the creation of semipermeable membranes and membraneless artificial organelles has recently garnered significant attention, aiming to achieve cytomimetic properties. We briefly describe the concept of liquid-liquid phase separation and review approaches for the fabrication of cell-sized membranous protocells (e. g., giant unilamellar vesicles, polymersomes and proteinosomes). Three strategies are emphasized for the construction of advanced cell-like structures consisting of liquid-like subcompartments enclosed by a membrane: (i) adsorption and assembly of organic or inorganic species onto the surface of preformed coacervate microdroplets; (ii) interfacial assembly of a lipid or polymer bilayer on the surface of an aqueous pool containing preformed microdroplets; and (ii) triggering phase separation within a preformed semipermeable membrane with chemical or physical stimuli. This review underscores the significance of the hierarchical organization of these synthetic cellular structures in mimicking cytomimetic functions, including transmembrane signaling, protocell communication, prototissue formation, and their compelling biomedical applications.

自下而上地制造分隔的类细胞实体,是重建细胞内分层组织和模拟生命行为的一条大有可为的途径。最近,将半透膜和无膜人造细胞器的制造融为一体,以实现仿细胞特性的目标引起了广泛关注。我们简要介绍了液-液相分离的概念,并回顾了制造细胞大小的膜原细胞(如巨型单拉米小泡、聚合体和蛋白体)的方法。本综述强调了构建由膜围成的液态子区组成的高级类细胞结构的三种策略:(i) 将有机或无机物吸附和组装到预制的凝聚微滴表面;(ii) 在含有预制微滴的水池表面界面组装脂质或聚合物双分子层;以及 (ii) 利用化学或物理刺激引发预制半透膜内的相分离。本综述强调了这些合成细胞结构的分层组织在模拟仿生细胞功能方面的重要意义,包括跨膜信号传导、原细胞通讯、原组织形成及其引人注目的生物医学应用。
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引用次数: 0
Emergence of Cell Behavior Through Feedback Control of Polymersome Membrane Transport 通过聚合体膜运输的反馈控制实现细胞行为的产生
Pub Date : 2023-11-17 DOI: 10.1002/syst.202300044
Omar Rifaie-Graham

Artificial cell and organelle construction has recently gained substantial attention to generate simplified models for understanding of biological phenomena, or micro- and nanomachines for biomedical and biotechnological applications. A wide array of building blocks has been employed to build these systems as membraneless structures with the ability to compartmentalize chemical reactions by enhanced partitioning, or as membrane-defined entities that provide a physical barrier that inhibits the interference of external factors. While these systems present unique properties that enable high fidelity to biological processes, they present limited ability to recreate the high selectivity and specificity of small molecule trafficking observed in biological membranes. Owing to their high chemical versatility, polymers can be leveraged to generate 3D structures that resemble biological membranes while providing transmembrane chemical motifs that enable responsiveness to a wide array of stimuli. This Concept Article discusses the ability to control membrane transport facilitating the emergence of out-of-equilibrium feedback mechanisms that ultimately modulate enzymatic rates. This can be employed to engineer future artificial cells and organelles that display homeostasis as a mechanism of self-adaptation to continuously evolving environments.

人工细胞和细胞器的构建近来备受关注,其目的是生成简化模型,用于理解生物现象,或用于生物医学和生物技术应用的微型和纳米机器。人们利用各种构件将这些系统构建成无膜结构,通过增强分区能力将化学反应分隔开来,或构建成膜定义的实体,提供物理屏障,抑制外部因素的干扰。虽然这些系统具有独特的特性,能够高度逼真地反映生物过程,但它们再现生物膜中观察到的小分子贩运的高选择性和特异性的能力有限。由于聚合物具有高度的化学通用性,因此可以利用它们生成与生物膜相似的三维结构,同时提供跨膜化学基团,从而对各种刺激做出响应。这篇概念文章讨论了控制膜传输的能力,这种能力可促进失衡反馈机制的出现,最终调节酶的速率。这可以用来设计未来的人造细胞和细胞器,使其显示出平衡状态,作为一种自我适应不断进化的环境的机制。
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引用次数: 0
Bidirectional Communication between Droplet Interface Bilayers Driven by Cell-Free Quorum Sensing Gene Circuits 无细胞群体感应基因电路驱动的液滴界面双层双向通信
Pub Date : 2023-10-30 DOI: 10.1002/syst.202300041
Dr. David T. Gonzales, Surased Suraritdechachai, Dr. Christoph Zechner, Dr. T.-Y. Dora Tang

The front cover artwork is provided by David T. Gonzales of the Max Planck Institute of Molecular Cell Biology and Genetics. The image shows a collection of aqueous water-in-oil droplets with lipid bilayer interfaces. Inside each droplet is a cell-free expression system that is capable of gene expression or intercellular communication. Read the full text of the Research Article at 10.1002/syst.202300029.

封面插图由David T。马克斯·普朗克分子细胞生物学和遗传学研究所的冈萨雷斯说。该图像显示了一组具有脂质双层界面的含水油滴。每个液滴内部都有一个无细胞表达系统,能够进行基因表达或细胞间交流。阅读研究论文全文:10.1002/ system .202300029。
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引用次数: 0
1,3-Acetonedicarboxylic Acid as a Simple Stimulus for Reversible Time-Controlled pH Modulation 1,3-丙酮二羧酸作为可逆时控 pH 值调节的简单刺激物
Pub Date : 2023-10-27 DOI: 10.1002/syst.202300037
Vincent Verdoot, Dr. Adrien Quintard

Implementation of new activated carboxylic acids is crucial to switch reversibly chemical systems over time in a safer manner. By applying cheap 1,3-acetonedicarboxylic acid, the pH of aqueous solutions can be decreased before autonomously evolving over time back again to a higher value upon diacid decarboxylation. This decarboxylation can be catalysed by different species such as simple amines or simple metals such as iron and copper salts. This process generates 2 molecules of CO2 and acetone as single waste, considerably decreasing the toxicity associated with such activated acids. The potential of this weak diacid was confirmed by reversibly disrupting a strong gel upon diacid addition and opens the way to the application in complex chemically fuelled systems.

采用新型活化羧酸对于以更安全的方式长期可逆地转换化学体系至关重要。通过使用廉价的 1,3-丙酮二羧酸,可以降低水溶液的 pH 值,然后随着时间的推移,在二元酸脱羧作用下自动恢复到较高的值。这种脱羧反应可由不同的物质催化,如简单的胺或简单的金属(如铁盐和铜盐)。这一过程会产生 2 个分子的二氧化碳和丙酮作为单一废物,从而大大降低了此类活化酸的毒性。这种弱二元酸的潜力通过二元酸添加时可逆地破坏强凝胶而得到证实,并为其在复杂的化学燃料系统中的应用开辟了道路。
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引用次数: 0
Polylysine-Coated Surfaces Drive Competition in Chemical Reaction Networks to Enable Molecular Information Processing 聚赖氨酸涂层表面推动化学反应网络竞争,实现分子信息处理
Pub Date : 2023-10-22 DOI: 10.1002/syst.202300030
A. Hazal Koyuncu, Dr. Jacopo Movilli, Dr. Sevil Sahin, Dmitrii V. Kriukov, Prof. Jurriaan Huskens, Dr. Albert S. Y. Wong

This work describes a competing activation network, which is regulated by chemical feedback at the liquid-surface interface. Feedback loops dynamically tune the concentration of chemical components in living systems, thereby controlling regulatory processes in neural, genetic, and metabolic networks. Advances in systems chemistry demonstrate that chemical feedback could be designed based on similar concepts of using activation and inhibition processes. Most efforts, however, are focused on temporal feedback whereas biological networks are maintained by the interplay between temporal and spatial organization. Here, we designed a feedback system comprising a simple acid-base equilibrium that can be perturbed by two opposing activation processes. Crucially, one of the processes is immobilized on the surface of a microfluidic channel using poly-l-lysine (PLL). We measured the capacity of the PLL-coated channels to resist changes in pH in flow using a pH-sensitive indicator, phenol red, and showed that this capacity can be increased by employing polyelectrolyte multilayers. Specifically, we found that the rate of local activation (i. e., the deprotonation of the immobilized lysine residues) could be significantly increased to delay the otherwise fast equilibrium. This effect allowed for encoding read and write operations, providing the potential to bestow CRNs with the capacity of molecular information processing.

这项研究描述了一个竞争激活网络,该网络受液体-表面界面的化学反馈调节。反馈回路可动态调节生命系统中化学成分的浓度,从而控制神经、遗传和新陈代谢网络的调节过程。系统化学的进步表明,化学反馈的设计可以基于使用激活和抑制过程的类似概念。然而,大多数工作都集中在时间反馈上,而生物网络是通过时间和空间组织之间的相互作用来维持的。在这里,我们设计了一个反馈系统,该系统包括一个简单的酸碱平衡,可通过两个对立的激活过程进行扰动。最重要的是,其中一个过程是通过聚赖氨酸(PLL)固定在微流体通道表面的。我们使用对 pH 值敏感的指示剂苯酚红测量了涂有 PLL 涂层的通道在流动过程中抵抗 pH 值变化的能力,结果表明,采用聚电解质多层膜可以提高这种能力。具体来说,我们发现局部活化(即固定赖氨酸残基的去质子化)的速率可以显著提高,从而延迟原本快速的平衡。这种效应允许进行编码读写操作,为赋予 CRN 分子信息处理能力提供了可能。
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引用次数: 0
Front Cover: Bidirectional Communication between Droplet Interface Bilayers Driven by Cell-Free Quorum Sensing Gene Circuits (ChemSystemsChem 6/2023) 封面:无细胞群体感应基因电路驱动的液滴界面双层之间的双向通信(chemsystemscheme 6/2023)
Pub Date : 2023-10-05 DOI: 10.1002/syst.202300042
Dr. David T. Gonzales, Surased Suraritdechachai, Dr. Christoph Zechner, Dr. T.-Y. Dora Tang

The Front Cover shows collections of communicating synthetic cells composed of water-in-oil droplets separated and stabilized by lipid bilayer interfaces and containing cell-free expression system with quorum sensing gene circuits. Cover design by David T. Gonzales. More information can be found in the Research Article by T.-Y. Dora Tang and co-worker.

封面展示了由脂质双分子层界面分离和稳定的油包水液滴组成的交流合成细胞集合,并包含具有群体感应基因电路的无细胞表达系统。封面设计:David T。冈萨雷斯。更多信息可以在t - y的研究文章中找到。朵拉·唐和同事。
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引用次数: 0
Cover Feature: Peptide and Peptidomimetic Assemblies in Dynamic Combinatorial Chemistry (ChemSystemsChem 6/2023) 封面专题:动态组合化学中的肽和拟肽组装(chemsystemscheme 6/2023)
Pub Date : 2023-10-05 DOI: 10.1002/syst.202300043
Ashmi Rodrigues, Dr. Lou Rocard, Dr. Roba Moumné

The Cover Feature illustrates three strategies for the generation of dynamic combinatorial libraries (DCLs) of peptide or peptidomimetic-based assemblies. Exploring their self-adaptative potential can lead to the discovery of smart nanomaterials, drug nanocarriers or drugs for untreated diseases. Cover design by Ashmi Rodrigues. More information can be found in the Review by Ashmi Rodrigues, Lou Rocard and Roba Moumné.

封面特征说明了三种策略生成动态组合库(DCLs)的肽或肽聚体为基础的程序集。探索它们的自适应潜力可以导致发现智能纳米材料、药物纳米载体或治疗未治疗疾病的药物。封面由Ashmi Rodrigues设计。更多信息可以在Ashmi Rodrigues, Lou Rocard和Roba moumn撰写的评论中找到。
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引用次数: 0
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