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Front Cover: Effect of Temperature on Calcium-Based Chemical Garden Growth (ChemSystemsChem 5/2024) 封面:温度对钙基化学花园生长的影响(ChemSystemsChem 5/2024)
IF 3.1 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-09-13 DOI: 10.1002/syst.202480501
Dr. Pamela Knoll, Dr. Corentin C. Loron

The cover picture shows a scanning electron micrograph of self-organized chemical garden tubes. These calcium-based hollow structures are composed of porous walls separating an alkaline exterior liquid and acidic, metal salt interior solution. Natural analogs to this classic chemistry experiment are hydrothermal vents found at the base of the ocean. Their structures are composed of mineral walls which separate two disparate chemical environments maintaining a far-from-equilibrium setting. More in theResearch Article by Pamela Knoll and Corentin C. Loron.

封面图片显示的是自组织化学园管的扫描电子显微照片。这些钙基中空结构由多孔壁组成,将碱性外部液体和酸性金属盐内部溶液隔开。这一经典化学实验的自然类似物是海洋底部的热液喷口。它们的结构由矿物壁组成,将两种不同的化学环境分隔开来,维持着一种远非平衡的环境。更多内容请参阅 Pamela Knoll 和 Corentin C. Loron 的研究文章。Loron.
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引用次数: 0
Heat-Flow-Driven Nonequilibria for Prebiotic Chemistry 前生物化学中的热流驱动非平衡态
IF 3.1 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-08-02 DOI: 10.1002/syst.202400039
Christof B. Mast

The origin of life, being one of the most fascinating questions in science, is increasingly addressed by interdisciplinary research. In addition to developing plausible chemical models for synthesizing the first biomolecules from prebiotic building blocks, searching for suitable and plausible non-equilibrium boundary conditions that drive such reactions is thus a central task in this endeavor. This perspective highlights the remarkably simple yet versatile scenario of heat flows in geologically plausible crack-like compartments as a habitat for prebiotic chemistry. Based on our recent findings, it is discussed how thermophoretically driven systems offer insights into solving key milestones in the origin of life research, such as the template inhibition problem, prebiotic symmetry breaking, and the promotion of prebiotic chemistry by selective enrichment of biochemical precursors. Our results on molecular-selective thermogravitational accumulation, heat flow-induced pH gradients, and environmental cycles are put in the context of other approaches to non-equilibrium systems and prebiotic chemistry. The coupling of heat flows to chemical and physical boundary conditions thus opens up numerous future experimental research avenues, such as the extraction of phosphate from geomaterials or the integration of chemical reaction networks into thermal non-equilibrium systems, offering a promising framework for advancing the field of prebiotic chemistry.

生命起源是科学界最引人入胜的问题之一,越来越多的跨学科研究都在探讨这一问题。因此,除了开发可信的化学模型,从生物前构件中合成首批生物分子外,寻找合适、可信的非平衡边界条件来驱动此类反应也是这项工作的核心任务。从这个角度看,在地质学上看似合理的裂缝状隔间中的热流作为前生物化学的栖息地,是非常简单而又多变的方案。基于我们最近的研究成果,我们讨论了热物理驱动系统如何为解决生命起源研究中的关键里程碑问题(如模板抑制问题、先生物对称性破缺以及通过选择性富集生化前体促进先生物化学)提供见解。我们在分子选择性热重积聚、热流诱导的 pH 梯度和环境循环方面的研究成果,与其他研究非平衡系统和前生物化学的方法相结合。因此,热流与化学和物理边界条件的耦合开辟了许多未来的实验研究途径,如从地质材料中提取磷酸盐或将化学反应网络整合到热非平衡态系统中,为推进前生物化学领域的发展提供了一个前景广阔的框架。
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引用次数: 0
Photoswitchable Surfactants–Are there Alternatives to Azobenzene-Based Systems? 光开关表面活性剂--偶氮苯系物的替代品?
IF 3.1 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-07-29 DOI: 10.1002/syst.202400026
Dr. Marek Bekir, Dr. Johannes Gurke, Dr. Martin Reifarth

Owing to their property to alter their surface-activity upon the irradiation with light, photoswitchable surfactants have gained tremendous interest in colloidal science. Their mere addition to a colloidal system allows, e. g., to obtain control over polyelectrolytes, micro- and nanoscale particles or emulsions. Most literature examples focus on azobenzene-based, or related, systems, which employ a photoisomerization reaction for switching. Other structures, such as spiropyrans, play a subordinate role, although they have gained increasing attention over the past few years. In this perspective article, we want to provide an overview about existing systems of photoswitchable surfactants. We address the issue that alternative photoswitches are given less attention, and what benefits surfactants could possess that are based on said switchable units. With our contribution, we want to broaden the view on stimuli-responsive surfactants – and to provide a guideline for the design of novel structures.

光开关表面活性剂具有在光照射下改变表面活性的特性,因此在胶体科学领域引起了极大的兴趣。只需将它们添加到胶体系统中,就可以控制聚电解质、微米级和纳米级颗粒或乳液等。大多数文献实例都集中在偶氮苯或相关系统上,这些系统采用光异构化反应进行切换。其他结构,如螺丙烷,虽然在过去几年中日益受到关注,但其作用次之。在本视角文章中,我们将概述现有的光开关表面活性剂体系。我们探讨了替代光开关较少受到关注的问题,以及基于上述可切换单元的表面活性剂可以带来哪些益处。我们希望通过这篇文章拓宽人们对刺激响应型表面活性剂的认识,并为新型结构的设计提供指导。
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引用次数: 0
Nonequilibrium Membrane Dynamics Induced by  Active Protein Interactions and Chemical Reactions: A Review 活性蛋白质相互作用和化学反应诱导的非平衡膜动力学:综述
IF 3.1 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-07-22 DOI: 10.1002/syst.202400042
Hiroshi Noguchi
Biomembranes wrapping cells and organelles are not only the partitions that separate the insides but also dynamic fields for biological functionsaccompanied by membrane shape changes. In this review, we discuss the spatiotemporal patterns and fluctuations of membranes under nonequilibrium conditions. In particular, we focus on theoretical analyses and simulations. Protein active forces enhance or suppress the membrane fluctuations; the membrane height spectra are deviated from the thermal spectra. Protein binding or unbinding to the membrane is activated or inhibited by other proteins and chemical reactions, such as ATP hydrolysis. Such active binding processes can induce traveling waves, Turing patterns, and membrane morphological changes. They can be represented by the continuum reaction‐diffusion equations and discrete lattice/particle models with state flips. The effects of structural changes in amphiphilic molecules on the molecular‐assembly structures are also discussed.
包裹细胞和细胞器的生物膜不仅是分隔内部的隔板,也是生物功能的动态场,伴随着膜形状的变化。在这篇综述中,我们将讨论非平衡条件下膜的时空模式和波动。我们尤其关注理论分析和模拟。蛋白质活性力增强或抑制膜波动;膜高度谱偏离热谱。其他蛋白质和化学反应(如 ATP 水解)会激活或抑制蛋白质与膜的结合或解除结合。这种活跃的结合过程会引起行波、图灵模式和膜形态变化。它们可以用连续反应-扩散方程和具有状态翻转的离散晶格/粒子模型来表示。此外,还讨论了两亲分子结构变化对分子组装结构的影响。
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引用次数: 0
Molecular Information Processing in a Chemical Reaction Network using Surface‐Mediated Polyelectrolyte Complexation 利用表面介导的聚电解质络合在化学反应网络中处理分子信息
IF 3.1 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-07-21 DOI: 10.1002/syst.202400050
A. H. Koyuncu, Giulia Allegri, Taghi Moazzenzade, J. Huskens, Saskia Lindhoud, Albert S. Y. Wong
Biochemical communication is ubiquitous in life. Biology use chemical reaction networks to regulate concentrations of myriad signaling molecules. Recent advances in supramolecular and systems chemistry demonstrate that feedback mechanisms of such networks can be rationally designed but strategies to transmit and process information encoded in molecules are still in their infancy. Here, we designed a polyelectrolyte reaction network maintained under out‐of‐equilibrium conditions using pH gradients in flow. The network, comprises two weak polyelectrolytes (polyallylamine, PAH, and polyacrylic acid, PAA) in solution and one immobilized on the surface (poly‐l‐lysine, PLL). We chose PAH and PAA as their complexation process is known to be history dependent (i.e., the preceding state of the system can determine the next state). Surprisingly, we found that the hysteresis diminished as the PLL‐coated surface supported rather than perturbed the formation of the complex. PLL‐coated surfaces are further exploited to established that reversible switching between the assembled and disassembled state of polyelectrolytes can exploited to process signals encoded in the frequency and duration of pH pulses. We envision that the strategy employed to modulate information in this polyelectrolyte reaction network could open novel routes to transmit and process molecular information in biologically relevant processes.
生化通讯在生活中无处不在。生物学利用化学反应网络来调节无数信号分子的浓度。超分子化学和系统化学的最新进展表明,此类网络的反馈机制可以合理设计,但传输和处理分子编码信息的策略仍处于起步阶段。在这里,我们设计了一种利用流动中的 pH 梯度在失衡条件下维持的聚电解质反应网络。该网络由两种溶液中的弱聚电解质(聚烯丙基胺 PAH 和聚丙烯酸 PAA)和一种固定在表面的弱聚电解质(聚-l-赖氨酸 PLL)组成。我们选择 PAH 和 PAA 是因为已知它们的络合过程与历史有关(即系统的前一状态可决定后一状态)。出乎意料的是,我们发现由于 PLL 涂层表面支持而不是干扰了复合物的形成,因此滞后现象减弱了。PLL 涂层表面进一步证实,聚电解质在组装和分解状态之间的可逆切换可用于处理 pH 脉冲频率和持续时间中编码的信号。我们设想,在这种聚电解质反应网络中调控信息的策略可以为在生物相关过程中传输和处理分子信息开辟新的途径。
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引用次数: 0
Front Cover: Artificial Molecular Systems for Complex Functions Based on DNA Nanotechnology and Cell-Sized Lipid Vesicles (ChemSystemsChem 4/2024) 封面:基于 DNA 纳米技术和细胞大小脂质囊泡的复杂功能人工分子系统(ChemSystemsChem 4/2024)
IF 3.1 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-07-15 DOI: 10.1002/syst.202480401
Prof. Dr. Yusuke Sato

The front cover illustrates cell-like functional molecular systems based on DNA nanotechnology and lipid vesicles. The base-specific interactions of DNA enable the construction of various functional components that can be integrated into lipid vesicles, aiming to create artificial molecular systems comparable to, or even surpassing, natural molecular systems, such as living cells. The Review by Y. Sato describes the latest achievements in functions realized through the combination of DNA nanotechnology and lipid vesicles.

封面展示了基于 DNA 纳米技术和脂质囊泡的类细胞功能分子系统。通过 DNA 的碱基特异性相互作用,可以构建各种功能元件,并将其整合到脂质囊泡中,从而创造出与活细胞等自然分子系统相媲美甚至超越它们的人工分子系统。Y. Sato 的综述介绍了通过 DNA 纳米技术与脂质囊泡的结合实现功能的最新成果。
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引用次数: 0
Life in Lab: Chemically Fueled Systems Chemistry for Emergent Properties 实验室生活化学燃料系统 新生特性化学
IF 3.1 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-07-09 DOI: 10.1002/syst.202400028
Sudeep Koppayithodi, Prerna Ranasingh, Nishant Singh
Understanding the emergence of complex properties in dissipative non‐equilibrium systems is crucial for unraveling the mysteries of life processes. The review focuses on the documented research on chemically fueled autonomous systems, self‐sorting towards compartmentalization, self‐replication via autocatalysis, and rhythmic chemical oscillators. In addition to that, the review also discusses newly introduced reactions and dynamic combinatorial libraries in dissipative systems.
了解耗散非平衡系统复杂特性的出现对于揭开生命过程的奥秘至关重要。这篇综述重点介绍了有关化学燃料自主系统、实现分区的自我排序、通过自催化实现自我复制以及有节奏的化学振荡器的文献研究。除此之外,综述还讨论了耗散系统中新引入的反应和动态组合库。
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引用次数: 0
A Chemical Mechanism for the Bistable-to-Oscillatory Transition in Colloidal Aggregates of Silver Phosphate 磷酸银胶体聚集体从双稳态到振荡转变的化学机制
IF 3.1 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-06-18 DOI: 10.1002/syst.202400024
María Antonieta Sánchez-Farrán, Ali Borhan, Ayusman Sen, Vincent H. Crespi

We previously reported collective behavior in colloidal aggregates of silver phosphate in H2O2 and under UV light. Diffusiophoretic interactions between aggregates lead to non-linear behavior such as oscillations and synchronization, in which oscillation frequencies increase with H2O2 concentration. The aggregates transition between schooling and dispersed behaviors with incipient spatiotemporal correlations. We identified a kinetic model that maps the chemical species that are thought to underlie non-linear phenomena in the colloidal aggregates, i. e. adsorbed oxygen species *OOH and *O. We investigate the emergent dynamics for the simplest case, the coupling of two otherwise bistable clusters. Two coupling schemes are proposed and we find that – depending on whether the coupling is excitatory or inhibitory – the clusters may oscillate with zero or π phase shift.

我们以前曾报道过磷酸银胶体聚集体在 H2O2 和紫外线照射下的集体行为。聚集体之间的扩散性相互作用导致了振荡和同步等非线性行为,其中振荡频率随 H2O2 浓度的增加而增加。聚集体在游动和分散行为之间过渡,并具有初步的时空相关性。我们确定了一个动力学模型,该模型映射了被认为是胶体聚集体非线性现象基础的化学物种,即吸附氧物种 *OOH- 和 *O。我们研究了最简单情况下的突发动力学,即两个原本双稳态团簇的耦合。我们提出了两种耦合方案,并发现--取决于耦合是兴奋性的还是抑制性的--团簇可能以零或 π 相移的方式振荡。
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引用次数: 0
Photostimuli reach a selective intermediate in a microflow: one‐shot transformation from a supramolecular co‐polymer to a micro‐disk structure 光刺激到达微流中的选择性中间体:从超分子共聚物到微盘结构的一次转化
Pub Date : 2024-06-10 DOI: 10.1002/syst.202400031
Akira Kaneyoshi, Shota Nomura, Takato Maeda, Takahiro Kusukawa, Yoshihiro Kikkawa, Munenori Numata
In supramolecular chemistry, photostimulants are generally combined with a static solution under thermodynamic equilibrium with no time progression. In this study, snapshot control of supramolecular polymerization was first combined with pinpoint photoirradiation using a microflow system. Employing the azobenzene derivative trans‐C3NO as a monomer, a snapshot moment of supramolecular polymerization along a microflow channel was selectively irradiated with UV light at 365 nm in a space‐resolved manner, so that the monomers, intermediates (oligomers), or extended supramolecular polymers were selectively exposed to light stimuli. We found that a pinpoint photostimulus to each snapshot moment had a pronounced effect on the kinetic pathway by tuning the timing at which the snapshot moment of cis‐C3NO was generated.
在超分子化学中,光刺激剂通常与热力学平衡状态下的静态溶液相结合,没有时间进程。在本研究中,利用微流系统首次将超分子聚合的快照控制与精确光照射相结合。利用偶氮苯衍生物反式-C3NO 作为单体,以空间分辨的方式选择性地用波长为 365 纳米的紫外线照射超分子聚合的快照时刻,从而使单体、中间体(低聚物)或扩展的超分子聚合物选择性地受到光刺激。我们发现,通过调整顺式-C3NO 的快照时刻产生的时间,对每个快照时刻进行精确的光刺激对动力学途径有明显的影响。
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引用次数: 0
The Many-Chemicals Problem of Systems Chemistry 系统化学的多化学问题
IF 3.1 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-05-22 DOI: 10.1002/syst.202400027
Dr. Oliver R. Maguire

An E. coli cell contains ~2500 different chemicals which combine into an ordered biochemical reaction network out of which emerges a living system. A chemist taking 2500 different chemicals from a laboratory chemical cabinet and combining them together will likely cause an explosive disaster and produce an intractable chemical sludge. Systems Chemistry aspires to construct systems whose complexity rivals that of life. However, to do this we will need to learn how to combine hundreds or thousands of different chemicals together to form a functional system without descending into a disordered chemical sludge. This is the Many-Chemicals Problem of Systems Chemistry. I explore a key strategy life employs to overcome this challenge. Namely, the combination of kinetically stable and thermodynamically activated molecules (e. g. ATP) with enzyme catalysts (e. g. histidine kinases). I suggest how the strategy could have begun at the origin of life. Finally, I assess the implications of this strategy for Systems Chemistry and how it will enable systems chemists to construct systems whose complexity rivals that of life.

一个大肠杆菌细胞含有约 2500 种不同的化学物质,这些化学物质组合成一个有序的生化反应网络,从中产生一个生命系统。化学家从实验室的化学柜中取出 2500 种不同的化学物质并将它们结合在一起,很可能会引发爆炸性灾难,产生难以处理的化学淤泥。系统化学渴望构建复杂程度可与生命相媲美的系统。然而,要做到这一点,我们需要学会如何将成百上千种不同的化学物质组合在一起,形成一个功能系统,而不至于沦为无序的化学淤泥。这就是系统化学的多化学问题。我将探讨生命克服这一挑战的关键策略。即把动力学上稳定、热力学上活化的分子(如 ATP)与酶催化剂(如组氨酸激酶)结合起来。我提出了这一策略如何可能始于生命起源。最后,我将评估这一策略对系统化学的影响,以及它将如何使系统化学家构建出复杂程度可与生命媲美的系统。
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引用次数: 0
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