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DNA Methylation, Speciation and Domestication DNA甲基化、物种形成和驯化
Pub Date : 2017-07-14 DOI: 10.4172/2379-1764.1000234
Z. Banlaki
More than 150 years after Mendel published his observations on the fundamental laws of inheritance and nearly 65 years after Avery provided unambiguous evidence that the hereditary material is DNA, unraveling the molecular basis underlying phenotypic plasticity and diversity is still a hot topic in genetics. Natural selection counteracts DNA sequence variation, yet losing genetic variation renders populations more vulnerable to changes in environmental conditions. This apparent contradiction can be resolved if adaptation is primarily dependent on altered gene regulation rather than on altered protein structures. Epigenetic modifications, which can effectively be maintained during cell division even across several generations, but at the same time are generally transient and as such, can flexibly be rearranged upon, e.g. environmental stimuli, offer an ideal solution to this inherent problem. In concert with these theoretical considerations, an increasing body of evidence demonstrates that evolutionary processes go hand in hand with shifts in epigenetic patterns, at least with regard to DNA methylation marks.
在孟德尔发表他关于遗传基本规律的观察结果150多年后,在艾弗里提供明确证据证明遗传物质是DNA近65年后,揭示表型可塑性和多样性的分子基础仍然是遗传学的热门话题。自然选择抵消了DNA序列的变异,但失去遗传变异使种群更容易受到环境条件变化的影响。如果适应主要依赖于改变的基因调控而不是改变的蛋白质结构,那么这个明显的矛盾就可以解决。表观遗传修饰可以在细胞分裂过程中有效地维持,甚至跨越几代,但同时通常是短暂的,因此可以灵活地重新安排,例如环境刺激,为这一固有问题提供了理想的解决方案。与这些理论考虑相一致,越来越多的证据表明,进化过程与表观遗传模式的变化密切相关,至少在DNA甲基化标记方面是这样。
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引用次数: 0
Contribution of DUSP28 to Regulation of Mucins in Human Pancreatic Cancer Cells DUSP28在人胰腺癌细胞粘蛋白调控中的作用
Pub Date : 2017-07-14 DOI: 10.4172/2379-1764.1000232
Jungwhoi Lee, Jae Hoon Kim
Pancreatic cancer remains one of the most deadly cancers, and once diagnosed, the prognosis for patient survival is poor. Patient outcomes have not been improved despite considerable and continuous efforts. We have suggested that dual-specificity phosphatase 28 (DUSP28) is a potential anti-cancer target to inhibit malignant pancreatic cancers. In this context, atypical DUSP28 can affect the regulation of mucins such as mucin5B (MUC5B) and mucin16 (MUC16). To investigate this correlation, we analysed mRNA levels of DUSP28 and mucins using the Gene Expression Omnibus public microarray database in pancreatic cancer, which indicated higher DUSP28, MUC1, MUC4, MUC5B, MUC16 and MUC20 mRNA levels in pancreatic cancers compared with normal pancreas tissue. In addition, DUSP28 expression in human pancreatic cancers correlated positively with those of MUC1, MUC4, MUC5B, MUC16 and MUC20. In contrast, there were no significant correlations between DUSP28 and mucins in normal pancreas tissues. Decreased DUSP28 expression resulted in down regulation of MUC5B and MUC16 at both the mRNA and protein levels. Furthermore, blockade of MUC5B or MUC16 expression inhibited migration and survival of cancer cells through the inhibition of phosphorylated FAK and ERK1/2. Collectively, we propose that DUSP28 uniquely links regulation of MUC5B and MUC16 to migration and survival of pancreatic cancer cells, which strongly support a rationale for targeting DUSP28 to inhibit development of malignant pancreatic cancer.
胰腺癌仍然是最致命的癌症之一,一旦确诊,患者生存的预后很差。尽管付出了大量持续的努力,但患者的预后并没有得到改善。我们提示双特异性磷酸酶28 (DUSP28)是抑制恶性胰腺癌的潜在抗癌靶点。在这种情况下,不典型DUSP28可以影响粘蛋白如mucin5B (MUC5B)和mucin16 (MUC16)的调控。为了研究这种相关性,我们使用基因表达Omnibus公共微阵列数据库分析了胰腺癌中DUSP28和粘蛋白的mRNA水平,结果表明,与正常胰腺组织相比,胰腺癌中DUSP28、MUC1、MUC4、MUC5B、MUC16和MUC20的mRNA水平较高。此外,DUSP28在人胰腺癌中的表达与MUC1、MUC4、MUC5B、MUC16、MUC20的表达呈正相关。正常胰腺组织中DUSP28与粘蛋白无显著相关性。DUSP28表达降低导致MUC5B和MUC16 mRNA和蛋白水平下调。此外,阻断MUC5B或MUC16的表达可以通过抑制磷酸化的FAK和ERK1/2来抑制癌细胞的迁移和存活。总之,我们提出DUSP28独特地将MUC5B和MUC16的调控与胰腺癌细胞的迁移和存活联系起来,这有力地支持了靶向DUSP28抑制恶性胰腺癌发展的理论基础。
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引用次数: 0
The PE/PPE Multigene Family of Mycobacteria and TB Vaccines 分枝杆菌PE/PPE多基因家族与结核疫苗
Pub Date : 2017-06-29 DOI: 10.4172/2379-1764.1000231
M. Brennan
Volume 5 • Issue 3 • 1000231 Adv Tech Biol Med, an open access journal ISSN: 2379-1764 Mycobacteria including Mycobacteria tuberculosis (Mtb) contain a multi-gene family, named the PE/PPE family. Mycobacterial strains contain about 165 genes, consisting of two major subfamilies the PE (containing the PE_PGRS group) and PPE, of which many of the constituents are very homologous (>50%). Since their discovery, scientists speculated about the role the members in this family might play in Mtb pathogenesis, immunity, evolution, and antigenic variation. Brennan et al. [1] in Issue 6 of Infection and Immunity, summarizes what is known about PE/PPEs with a particular focus on how they could be used in new TB vaccines. In fact, two TB vaccines presently being studied in clinical trials, GSK’s M72 and IDRI’s ID93, each contain a PPE protein. Another TB vaccine, the live Mtb mutant strain MtbΔPPE/ PE25-PE19 developed by the laboratories at the University of Pisa and Institute Pasteur, is a mutant which is missing two PEs and three PPEs, is under preclinical development. Evidence indicates that this vaccine is safe and is protective due to cross reactivity among the PE and PPEs in animal models for TB.
分枝杆菌包括结核分枝杆菌(Mtb)包含一个多基因家族,被命名为PE/PPE家族。分枝杆菌菌株含有约165个基因,包括两大亚家族PE(含PE_PGRS群)和PPE,其中许多成分同源性很高(>50%)。自从他们的发现以来,科学家们推测这个家族的成员可能在结核分枝杆菌的发病机制、免疫、进化和抗原变异中发挥作用。Brennan等人[1]在《感染与免疫》第6期中总结了PE/ ppe的已知情况,并特别关注如何将它们用于新的结核病疫苗。事实上,目前正在临床试验中研究的两种结核病疫苗,GSK的M72和IDRI的ID93,都含有PPE蛋白。另一种结核病疫苗,即由比萨大学和巴斯德研究所实验室开发的活结核分枝杆菌突变株MtbΔPPE/ PE25-PE19,是一种缺少两种pe和三种pe的突变株,正在临床前开发中。有证据表明,由于结核病动物模型中PE和ppe之间的交叉反应,该疫苗是安全的,具有保护作用。
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引用次数: 0
Flattening and Unpacking Human Genetic Variation in Mexico, Postwar to the Present 从战后到现在,墨西哥人类基因变异的扁平化和拆解
Pub Date : 2017-06-28 DOI: 10.4172/2379-1764.1000233
Víctor H. Anaya-Muñoz
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引用次数: 1
The Zebrafish Model to Study the Role of microRNAs in Glomerular Function and Disease 用斑马鱼模型研究microrna在肾小球功能和疾病中的作用
Pub Date : 2017-06-23 DOI: 10.4172/2379-1764.1000230
J. Müller-Deile, M. Schiffer
microRNAs (miRs) are non-coding small RNAs that play an important role in posttranscriptional regulation of gene expression. Recent studies indicate that miRs are also mediators in different disease processes. Here we review how the zebrafish model can be used to study the role of miRs in glomerular function and disease. Microinjections of miR mimics were done in zebrafish eggs and larvae. A transgenic zebrafish line which expresses a green fluorescent plasma protein was used to investigate protein loss though the glomerular filtration barrier. Electron microscopy analysis revealed the level and degree of glomerular damage after miR overexpression. MiR- 143-3p seems to be important for glomerular glycocalyx as overexpression of miR-143-3p leads to down regulation of versican, proteinuria and damage on the endothelial and epithelial side of the glomerular filtration barrier. In contrast, overexpression of miR-378a-3p by injection of a specific miR mimic caused proteinuria, edema, podocyte effacement and thickening of the glomerular basement membrane. These findings could be rescued by coinjections of a nephronectin construct with a mutated 3’UTR region where the miR could not bind. Thus, miR mimics can be used in the zebrafish model to study the role of miRs involved in glomerular diseases.
microRNAs (miRs)是非编码小rna,在基因表达的转录后调控中起重要作用。最近的研究表明,miRs也是不同疾病过程的介质。在这里,我们回顾了如何利用斑马鱼模型来研究miRs在肾小球功能和疾病中的作用。在斑马鱼卵和幼虫中进行miR模拟物的显微注射。用表达绿色荧光血浆蛋白的转基因斑马鱼株系研究了通过肾小球滤过屏障的蛋白损失。电镜分析显示miR过表达后肾小球损伤的水平和程度。MiR- 143-3p似乎对肾小球糖萼很重要,因为MiR- 143-3p的过表达会导致肾小球滤过屏障内皮和上皮侧的versican下调、蛋白尿和损伤。相反,通过注射特定miR模拟物过表达miR-378a-3p导致蛋白尿、水肿、足细胞消失和肾小球基底膜增厚。这些发现可以通过与miR不能结合的突变3'UTR区域共注射nephronectin构建体来挽救。因此,miR模拟物可以在斑马鱼模型中用于研究miR参与肾小球疾病的作用。
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引用次数: 1
Commentary on Covalent Tethering of Photo-responsive Superficial Layers on Hydrogel Surfaces 水凝胶表面光响应浅层共价系缚研究进展
Pub Date : 2017-06-21 DOI: 10.4172/2379-1764.1000229
Lie Chen, Mingjie Liu
Volume 5 • Issue 3 • 1000229 Adv Tech Biol Med, an open access journal ISSN: 2379-1764 Hydrogels are widely used in the field related to biological medicine, such as drug carrier and drug delivery vehicle due to their excellent biocompatibility [1]. In the last two decades, hydrogels with diverse stimuli responsiveness were developed and utilized to construct the controlled release systems. However, conventionally strategies that are reported to prepare stimuli-responsive hydrogels usually suffer from complex preparation procedures [2-4] and the using of sol-gel transition process of the hydrogel to realize the controlled release would inevitably lead to the burst release [5-7]. Overcoming these limitations, we report a post-modified hydrogel with photo-controlled release property by covalent tethering of photo-responsive superficial layers on hydrogel surfaces in Chemical Science [8].
《Adv Tech Biol Med》,开放获取期刊,ISSN: 2379-1764水凝胶由于其优异的生物相容性,被广泛应用于药物载体、药物传递载体等生物医学相关领域。在过去的二十年中,具有不同刺激响应性的水凝胶被开发并用于构建控释系统。然而,传统的制备刺激响应型水凝胶的策略通常具有复杂的制备过程[2-4],并且利用水凝胶的溶胶-凝胶过渡过程来实现控制释放不可避免地会导致爆裂释放[5-7]。为了克服这些限制,我们在《化学科学》杂志上报道了一种具有光控释放特性的后修饰水凝胶,其方法是在水凝胶表面的光响应表面层上进行共价系缚。
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引用次数: 0
Ecotoxicological Evaluation of Parallelomorphus laevigatus (Coleoptera, Carabidae) as a Useful Bioindicator of Soil Metal Pollution 作为土壤金属污染有用生物指示物的laevigatus生态毒理学评价(鞘翅目,蜈蚣科
Pub Date : 2017-06-20 DOI: 10.4172/2379-1764.1000228
E. Conti
The importance of carabid beetles in environmental study is reported. Among this group P. laevigatus is a useful bio indicator of metal pollution. The burden of trace elements in animal tissue reflects the contamination level of investigated areas. The alteration of orientation performances by this species put the basis to consider orientation in space of P. laevigatus as a behavioral biomarker for exposure to trace metals contamination.
本文报道了瓢虫在环境研究中的重要性。其中,黄颡鱼是一种有用的金属污染生物指示物。动物组织中微量元素的负荷反映了调查地区的污染程度。该物种取向表现的改变为考虑将空间取向作为痕量金属污染暴露的行为生物标志物提供了基础。
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引用次数: 5
Genotype-Phenotype Correlation - Two Families with GCH1 Mutations 基因型-表型相关性-两个GCH1突变家族
Pub Date : 2017-05-29 DOI: 10.4172/2379-1764.1000225
Yaping Yan, Bo Zhang
Dopa-responsive dystonia (DRD), attributed to GTP cyclohydrolase 1 (GCH1) mostly, is a clinically and genetically heterogeneous disorder. Our recent study have identified that phenotype may not be identical to genotype, even in the same family. One patient with parkinsonism was found to carry GCH1 mutation. Why phenotype is not correlated to genotype? Whether GCH1 is a risk factor for developing Parkinson’s disease (PD)? Further genetic and clinical studies are necessary to elucidate these questions.
多巴反应性肌张力障碍(DRD)是一种临床和遗传异质性疾病,主要归因于GTP环水解酶1 (GCH1)。我们最近的研究发现,即使在同一个家庭中,表现型可能与基因型不相同。一名帕金森病患者被发现携带GCH1突变。为什么表现型与基因型不相关?GCH1是否是帕金森病(PD)的危险因素?需要进一步的遗传和临床研究来阐明这些问题。
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引用次数: 0
The Mycology as Forensics Tool 真菌学作为法医工具
Pub Date : 2017-05-29 DOI: 10.4172/2379-1764.1000226
Tranchida María Cecilia, Cabello Marta Noemí
In a murder case it is very common to find a corpse in a grave followed by the human decomposition. In a criminal act, the facts in a legal investigation are not clear enough to help clarify unnatural causes of death by suicide or homicide. Estimating the post-mortem interval (PMI), and mainly in cases where there are no witnesses, is crucial to the investigation process. However, the today study of certain species of fungi found and collected from soil in contact with a rotting human body; contribute to obtain important data useful to estimate the PMI of the victim in crime scene investigation. Dichotomomyces cejpii, Talaromyces trachyspermus, Talaromyces flavus and Talaromyces udagawae, teleomorphic Ascomycota fungal are the mycobiota currently found and clearly differs to associated mycobiota in control sample and from previously described species Buenos Aires Province, Argentina. Furthermore, additional tests are needed to finally rely on the mycology as a forensic tool.
在谋杀案件中,很常见的是在坟墓里发现一具尸体,然后是人的腐烂。在犯罪行为中,法律调查中的事实不够清楚,无法帮助澄清自杀或他杀等非自然死亡原因。估计死亡间隔(PMI),特别是在没有证人的情况下,对调查过程至关重要。然而,今天对从与腐烂的人体接触的土壤中发现和收集的某些真菌种类的研究;有助于获得对现场调查中受害人PMI估计有用的重要数据。目前发现的真菌群有:cejpii二歧菌群、粗精子Talaromyces、Talaromyces flavus和Talaromyces udagawae、远形子囊菌群真菌Talaromyces flavus和Talaromyces udagawae,它们明显不同于对照样品中的相关真菌群,也不同于阿根廷布宜诺斯艾利斯省先前描述的物种。此外,还需要进行额外的测试,才能最终依靠真菌学作为法医工具。
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引用次数: 4
Screening for MPN Mutations in Cases of Deep Vein Thrombosis and/or Pulmonary Embolism: What We have learnt from Studies 深静脉血栓和/或肺栓塞病例中MPN突变的筛查:我们从研究中学到的东西
Pub Date : 2017-05-22 DOI: 10.4172/2379-1764.1000224
J. Ianotto
Myeloproliferative neoplasms (MPN) are chronic myeloid disorders characterized by a high-risk of thrombosis. One-third is in venous vessels. Clinicians who treat patients experiencing thromboses in such vessels know the high rate of cancer in such situation. Many studies have been published concerning the screening for mutations that drive MPNs (mostly JAK2V617F and CALR mutations) in case of deep vein thromboses and/or pulmonary embolism. We reviewed the results of the studies published since 2005 (year of discovery of JAK2V617F, the most frequent of these mutations) and we analyzed the prevalence of mutations among the patients and their characteristics. Sixteen studies have been published on this topic. Of 2907 patients, 39 (1.3%) were positive for JAK2V617F, reaching 2.1% in case of history of recurrence. CALR mutations have not been found in any of the studied situations. Women represent 73.5% of the cases. Patients over the age of 60 account for 76.5% of the cases. Only 10 (29.4%) of the patients have been identified to have MPN despite a median follow-up period of 42 months. All had thrombocytosis or polycythemia at the time of the thrombosis. Nineteen patients experienced thrombotic recurrence, describing JAK2V617F mutation as a pro-thrombotic factor. Screening for JAK2V617F or CALR mutations should not be systematically performed for patients experiencing deep vein thromboses and/or pulmonary embolism because of the low rate of positivity. Attention should perhaps be focused on patients with persistent thrombocytosis or polycythemia who have a higher rate of MPNs. For the other positive cases with no features of MPN, the management is unclear, but a thorough evaluation by a hematologist should be performed, and the patients should be followed for years.
骨髓增生性肿瘤(MPN)是慢性髓系疾病的特点是血栓形成的高风险。三分之一在静脉血管。治疗这些血管血栓形成患者的临床医生知道,在这种情况下癌症的发病率很高。关于在深静脉血栓形成和/或肺栓塞的情况下筛选驱动mpn的突变(主要是JAK2V617F和CALR突变),已经发表了许多研究。我们回顾了自2005年(发现JAK2V617F,这些突变中最常见的一年)以来发表的研究结果,并分析了患者中突变的患病率及其特征。关于这个主题已经发表了16项研究。2907例患者中,39例(1.3%)JAK2V617F阳性,有复发史的患者达到2.1%。CALR突变未在任何研究情况下被发现。女性占73.5%。60岁以上患者占76.5%。尽管中位随访时间为42个月,但仅有10例(29.4%)患者被确诊为MPN。所有患者在血栓形成时均有血小板增多或红细胞增多症。19例患者出现血栓复发,将JAK2V617F突变描述为促血栓因子。对于深静脉血栓形成和/或肺栓塞的患者,由于阳性率低,不应系统地筛查JAK2V617F或CALR突变。可能应该关注持续性血小板增多症或红细胞增多症患者,他们有较高的mpn发生率。对于其他没有MPN特征的阳性病例,处理方法尚不清楚,但应由血液学家进行全面评估,并对患者进行多年随访。
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引用次数: 0
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Advanced techniques in biology & medicine
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