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Considerations before the application of 5-hydroxymethylation levels of long non-coding RNAs for non-invasive cancer diagnosis. 长链非编码rna的5-羟甲基化水平用于非侵袭性癌症诊断前的考虑。
Pub Date : 2022-01-01 Epub Date: 2022-01-21 DOI: 10.20517/evcna.2021.22
Zhou Zhang, Chang Zeng, Wei Zhang

Previous studies have suggested that aberrant 5-hydroxymethylcytosines (5hmC) modifications are related to cancer pathobiology. Genome-wide profiling 5hmC in circulating cell-free DNA (cfDNA) using the highly sensitive chemical labeling-based 5hmC-Seal technique has been demonstrated to have the potential to be a robust epigenomic tool for cancer biomarker discovery. Prior studies have mostly focused on cfDNA-derived 5hmC-Seal data summarized in well-annotated genic features (e.g., gene bodies) or unbiased bins. Zhou et al. recently proposed long non-coding RNAs (lncRNAs) as an alternative molecular target for biomarker discovery using publicly available 5hmC-Seal data. Considering its potential clinical impact, we would like to comment on Zhou et al. and advocate more serious consideration of critical issues such as the availability of clinical information and technical variables, especially when performing secondary analysis using publicly available data, with the aim of improving data transparency and translatability.

以往的研究表明,5-羟甲基胞嘧啶(5hmC)异常修饰与癌症病理生物学有关。利用高度敏感的基于化学标记的5hmC- seal技术对循环无细胞DNA (cfDNA)中的5hmC进行全基因组分析,已被证明具有成为发现癌症生物标志物的强大表观基因组工具的潜力。先前的研究主要集中在cfdna衍生的5hmC-Seal数据中,这些数据汇总在注释良好的基因特征(如基因体)或无偏箱中。Zhou等人最近利用公开的5hmC-Seal数据,提出长链非编码rna (lncRNAs)作为生物标志物发现的另一种分子靶标。考虑到其潜在的临床影响,我们想评论周等人,并提倡更认真地考虑关键问题,如临床信息和技术变量的可用性,特别是在使用公开可用的数据进行二次分析时,以提高数据透明度和可翻译性。
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引用次数: 2
Summary of Prof. Yin’s CSEMV-EVCNA award lecture 2021 尹教授2021年CSEMV-EVCNA获奖讲座总结
Pub Date : 2022-01-01 DOI: 10.20517/evcna.2022.16
Ying Zhang, Hang Yin
Extracellular vesicles (EVs) have been regarded as influential intracellular delivering parcels that possess tremendous potential because of their strict and complex secretion regulation processes. However, traditional detection methods cannot monitor the secretion of EVs due to their small particle diameters. Inspired by their peculiar diverse appearances and lipid membranes ingredients, we developed an innovative strategy to detect EVs in any kind of fluids by using rationally designed peptide probes that particularly recognize the highly curved surface of EVs. These peptide probes also serve as novel tools to selectively target cancerous cells with specific lipid compositions and distributions. With this strategy, we discovered a series of EV-secreting regulation mechanisms and identified their roles within physiological processes. Recently, we found that the transportation of oligodeoxynucleotides and cell division control protein 42 homolog from TLR9-activated macrophages to naïve cells via EVs exerts synergetic effects in the propagation of the intracellular immune response, which suggests a general mechanism for EV-mediated uptake of pathogen-associated molecular patterns.
细胞外囊泡(Extracellular vesicles, ev)因其严格而复杂的分泌调控过程而被认为是具有巨大潜力的细胞内递送包裹。然而,由于电动汽车的颗粒直径小,传统的检测方法无法监测其分泌情况。受其独特多样的外观和脂质膜成分的启发,我们开发了一种创新的策略,通过使用合理设计的肽探针来检测任何液体中的电动汽车,特别是识别电动汽车的高弯曲表面。这些肽探针也可以作为一种新的工具来选择性地靶向具有特定脂质组成和分布的癌细胞。通过这一策略,我们发现了一系列ev分泌调节机制,并确定了它们在生理过程中的作用。最近,我们发现从tlr9激活的巨噬细胞向naïve细胞运输寡核苷酸和细胞分裂控制蛋白42同源物在细胞内免疫反应的传播中发挥协同作用,这提示了ev介导的病原体相关分子模式摄取的一般机制。
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引用次数: 0
New insights of engineering plant exosome-like nanovesicles as a nanoplatform for therapeutics and drug delivery 工程植物外泌体样纳米囊泡作为治疗和药物传递的纳米平台的新见解
Pub Date : 2022-01-01 DOI: 10.20517/evcna.2021.25
S. A. U. Shinge, Yin Xiao, Jiang Xia, Yujie Liang, Lijuan Duan
Plant exosome-like nanovesicles (PELNVs) are membrane-encapsulated nanostructures released from cells into their surroundings. PELNVs have an important role in intercellular and interspecies communication in all three domains of life. They act as protective compartments for the long-distance transit of signal molecules like proteins, nucleic acids, lipids, and other metabolites. A range of plants and vegetables can emit PELNVs. The importance of PELNVs in interspecies communication stems from their concentration in biomolecules (lipids, proteins, and miRNAs), lack of toxicity, ease of internalization by cells, and anti-inflammatory, immune-modulatory, and regenerative characteristics. PELNVs derived from numerous fruits and vegetables are biocompatible, biodegradable, and abundant in various plant species. Moreover, their convincing physicochemical characteristics underpin their modulative role in physiological and pathological processes, all of which have fueled speculation that these nanovesicles could be particularly adept at developing future-generation bio-therapeutic platforms. The goal of this review was not only to present an overview of the identified roles of PELNVs in physiology and pathology, but also to provide new insight toward their engineering for effective therapeutics and drug delivery nanoplatforms, a clue for future direction to the ongoing research gaps.
植物外泌体样纳米囊泡(PELNVs)是从细胞释放到周围环境的膜封装纳米结构。pelnv在所有三个生命领域的细胞间和种间交流中都起着重要作用。它们作为信号分子(如蛋白质、核酸、脂质和其他代谢物)远距离运输的保护隔室。一系列植物和蔬菜可以释放pelnv。PELNVs在物种间交流中的重要性源于它们在生物分子(脂质、蛋白质和mirna)中的浓度,缺乏毒性,易于被细胞内化,具有抗炎、免疫调节和再生特性。从许多水果和蔬菜中提取的PELNVs具有生物相容性,可生物降解性,并且在各种植物物种中含量丰富。此外,它们令人信服的物理化学特性支持了它们在生理和病理过程中的调节作用,所有这些都助长了人们的猜测,即这些纳米囊泡可能特别擅长开发下一代生物治疗平台。本综述的目的不仅是概述pelnv在生理和病理中的作用,而且还为其有效治疗和药物递送纳米平台的工程提供新的见解,为正在进行的研究空白的未来方向提供线索。
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引用次数: 8
Engineered mammalian and bacterial extracellular vesicles as promising nanocarriers for targeted therapy 工程哺乳动物和细菌细胞外囊泡作为靶向治疗的有前途的纳米载体
Pub Date : 2022-01-01 DOI: 10.20517/evcna.2022.04
Han Liu, Zhen Geng, Jiacan Su
Extracellular vesicles (EVs), which are nanocarriers with phospholipid bilayer structures released by most cells, play a key role in regulating physiological and pathological processes. EVs have been investigated due to their loading capacity, low toxicity, immunogenicity, and biofunctions. Although EVs have shown good potential as therapeutic vehicles, natural EVs have a poor targeting ability, which substantially reduces the therapeutic effect. Through the addition of a targeting unit into the membrane surface of EVs or inside EVs by engineering technology, the therapeutic agent can accumulate in specific cells and tissues. Here, we focus on mammalian EVs (MEVs) and bacterial EVs (BEVs), which are the two most common types of EVs in the biomedical field. In this review, we describe engineered MEVs and BEVs as promising nanocarriers for targeted therapy and summarize the biogenesis, isolation, and characterization of MEVs and BEVs. We then describe engineering techniques for enhancement of the targeting ability of EVs. Moreover, we focus on the applications of engineered MEVs and BEVs in targeted therapy, including the treatment of cancer and brain and bone disease. We believe that this review will help improve the understanding of engineered MEVs and BEVs, thereby promoting their application and clinical translation.
细胞外囊泡(Extracellular vesicles, EVs)是大多数细胞释放的具有磷脂双层结构的纳米载体,在调节生理和病理过程中起着关键作用。电动汽车因其负载能力、低毒性、免疫原性和生物功能而受到广泛研究。虽然电动汽车已经显示出良好的治疗潜力,但天然电动汽车的靶向能力较差,这大大降低了治疗效果。通过工程技术在电动汽车膜表面或电动汽车内部添加靶向单元,使治疗剂在特定细胞和组织中蓄积。在这里,我们重点关注哺乳动物电动汽车(mev)和细菌电动汽车(bev),这是生物医学领域最常见的两种电动汽车类型。在这篇综述中,我们描述了工程mev和bev作为靶向治疗的有前途的纳米载体,并总结了mev和bev的生物发生、分离和表征。然后,我们描述了增强电动汽车靶向能力的工程技术。此外,我们专注于工程mev和bev在靶向治疗中的应用,包括癌症和脑和骨疾病的治疗。我们相信这篇综述将有助于提高对工程化mev和bev的理解,从而促进它们的应用和临床转化。
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引用次数: 28
Obituary for Prof. Dr. Johng Sik Rhim 刘锡仁教授博士讣告
Pub Date : 2022-01-01 DOI: 10.20517/evcna.2022.15
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引用次数: 0
Engineered induced-pluripotent stem cell derived monocyte extracellular vesicles alter inflammation in HIV humanized mice. 工程诱导多能干细胞衍生的单核细胞胞外囊泡改变HIV人源化小鼠的炎症。
Pub Date : 2022-01-01 DOI: 10.20517/evcna.2022.11
Bing Sun, Scott Kitchen, Norina Tang, Andreas Garza, Sheela Jacob, Lynn Pulliam

Aim: A peripheral inflammatory response can drive neuroinflammation in a number of infections including human immunodeficiency virus (HIV). Monocyte/macrophage (M/Mφ) activation is a hallmark of acute HIV infection and a source of chronic inflammation in a subset of HIV-infected individuals. We sought to decrease peripheral inflammation and M/Mφ transmigration after HIV infection by engineering extracellular vesicles (EV) to antagonize a microRNA (miR) associated with inflammation. We hypothesized that induced pluripotent stem cell (iPSC)-derived monocyte EVs (mEVs), engineered to contain an antagomir to miR-155 (αmiR mEV) would target monocyte inflammation and influence neuroinflammation in an HIV-infected humanized mice.

Methods: mEVs were characterized by tetraspanins, nanoparticle tracking analysis, electron microscopy, and their preferential entry into circulating monocytes as well as testing for endogenous selected miRNAs. HIV-infected humanized mice were treated with control or antagomir155 mEVs. Plasma viral load was measured plus activation markers on lymphocytes and monocytes and the number of macrophages in the brain was quantified.

Results: mEVs preferentially entered peripheral monocytes. HIV infection increased C-C chemokine receptor type 5 (CCR5) and major histocompatibility complex, class II, DR (HLA-DR) expression on T cells and monocytes. Treatments with mEVs did not decrease plasma HIV viral load; however, mEVs alone resulted in a decrease in %CCR5+ and %HLA-DR+ on T cells and an increase in %CCR5+ monocytes. αmiR mEVs decreased %CCR5 on M/Mφ. The mEV-treated HIV-infected mice did not show an increase in macrophage transmigration to the brain.

Conclusion: mEVs alone caused an unexpected decrease in lymphocyte activation and increase in monocyte %CCR5; however, this did not translate to an increase in macrophage transmigration to the brain.

目的:外周炎症反应可以驱动包括人类免疫缺陷病毒(HIV)在内的许多感染的神经炎症。单核细胞/巨噬细胞(M/Mφ)活化是急性HIV感染的标志,也是一部分HIV感染者慢性炎症的来源。我们试图通过设计细胞外囊泡(EV)来拮抗与炎症相关的microRNA (miR),从而减少HIV感染后的外周炎症和M/Mφ转运。我们假设,诱导多能干细胞(iPSC)衍生的单核细胞ev (mEV),经过工程设计,含有miR-155 (αmiR mEV)的拮抗剂,可以靶向单核细胞炎症,并影响hiv感染人源化小鼠的神经炎症。方法:通过四跨蛋白、纳米颗粒跟踪分析、电子显微镜、mev优先进入循环单核细胞以及内源性选择的mirna检测来表征mev。用对照或安他哥米155 mev治疗hiv感染的人源化小鼠。测定血浆病毒载量及淋巴细胞和单核细胞的活化标记物,定量测定脑内巨噬细胞的数量。结果:mev优先进入外周单核细胞。HIV感染增加了C-C趋化因子受体5型(CCR5)和主要组织相容性复合体II类DR (HLA-DR)在T细胞和单核细胞上的表达。mev治疗没有降低血浆HIV病毒载量;然而,mev单独导致T细胞上%CCR5+和%HLA-DR+的下降和%CCR5+单核细胞的增加。αmiR mev降低了M/Mφ的%CCR5。mev治疗的hiv感染小鼠没有显示巨噬细胞向大脑转移的增加。结论:mev单独引起淋巴细胞活性的意外降低和单核细胞%CCR5的升高;然而,这并没有导致巨噬细胞向大脑转移的增加。
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引用次数: 2
Nucleic acid functionalized extracellular vesicles as promising therapeutic systems for nanomedicine 核酸功能化的细胞外囊泡是纳米医学中有前景的治疗系统
Pub Date : 2022-01-01 DOI: 10.20517/evcna.2021.21
Chunping Liu, Dongyue He, Huan Cen, Huiqi Chen, Longmei Li, G. Nie, Zixue Zhong, Qingfeng He, Xiaofei Yang, Sien Guo, Lei Wang, Zhijin Fan
Extracellular vesicles (EVs), as natural carriers, are regarded as a new star in nanomedicine due to their excellent biocompatibility, fascinating physicochemical properties, and unique biological regulatory functions. However, there are still some challenges to using natural EVs, including poor targeting ability and the clearance from circulation, which may limit their further development and clinical use. Nucleic acid has the functions of programmability, targeting, gene therapy, and immune regulation. Owing to the engineering design and modification by integrating functional nucleic acid, EVs offer excellent performances as a therapeutic system in vivo. This review briefly introduces the function and mechanism of nucleic acid in the diagnosis and treatment of diseases. Then, the strategies of nucleic acid-functionalized EVs are summarized and the latest progress of nucleic acid-functionalized EVs in nanomedicine is highlighted. Finally, the challenges and prospects of nucleic acid-functionalized EVs as a promising diagnostic system are proposed.
细胞外囊泡(Extracellular vesicles, ev)作为一种天然载体,以其优异的生物相容性、迷人的物理化学性质和独特的生物调控功能,成为纳米医学领域的一颗新星。然而,天然电动汽车仍存在一些挑战,包括靶向能力差和循环清除,这可能限制其进一步开发和临床应用。核酸具有可编程性、靶向性、基因治疗和免疫调节功能。通过整合功能性核酸的工程设计和改造,ev作为一种体内治疗系统具有优异的性能。本文就核酸在疾病诊断和治疗中的作用及机制作一简要介绍。总结了核酸功能化电动汽车的发展策略,重点介绍了核酸功能化电动汽车在纳米医学领域的最新进展。最后,提出了核酸功能化电动汽车作为一种有前景的诊断系统所面临的挑战和前景。
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引用次数: 14
Meeting report of the 2nd Lugano ExoDay: extracellular vesicles as next-generation clinical biomarkers and therapeutic agents 第二届Lugano ExoDay会议报告:细胞外囊泡作为下一代临床生物标志物和治疗剂
Pub Date : 2022-01-01 DOI: 10.20517/evcna.2022.17
C. Balbi, M. Cretich, L. Barile
an excellent and well-presented overview of the complexity of extracellular vesicles. the second lecture. The speaker addressed basic questions regarding the role of tumor-released EVs in mediating the pro-metastatic effects of chemotherapy. He showed advanced and elegant research in his laboratory, providing evidence that two classes of cytotoxic drugs are broadly employed in preoperative (neoadjuvant) breast cancer therapy, elicit tumor-derived EVs with enhanced pro-metastatic capacity. Mechanistically he showed that chemotherapy-elicited EVs are enriched in annexin A6 (ANXA6), a Ca 2+ -dependent protein that promotes NF- κ B-dependent endothelial cell activation, Ccl2 induction, and Ly6C+CCR2+ monocyte expansion in the pulmonary pre-metastatic niche to facilitate the establishment of lung metastasis [3] . Genetic inactivation of Anxa6 in cancer cells or Ccr2 in host cells blunts the pro-metastatic effects of chemotherapy-elicited EVs. ANXA6 is detected and potentially enriched, in the circulating EVs of breast cancer patients undergoing neoadjuvant chemotherapy. the application of of the
对细胞外囊泡的复杂性进行了极好的概述。第二讲。演讲者讨论了肿瘤释放的ev在化疗促转移效应中的作用的基本问题。他在他的实验室展示了先进而优雅的研究,提供了两类细胞毒性药物广泛应用于术前(新辅助)乳腺癌治疗的证据,引发具有增强的促转移能力的肿瘤源性ev。在机制上,他发现化疗诱导的EVs富含膜联蛋白A6 (ANXA6),这是一种ca2 +依赖性蛋白,可促进NF- κ b依赖性内皮细胞活化、Ccl2诱导和肺转移前生态位Ly6C+CCR2+单核细胞扩增,从而促进肺转移[3]的建立。癌细胞中的Anxa6或宿主细胞中的Ccr2基因失活会减弱化疗诱导的ev的促转移作用。在接受新辅助化疗的乳腺癌患者的循环ev中检测到并可能富集ANXA6。的应用
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引用次数: 0
Free flow electrophoresis allows quick and reproducible preparation of extracellular vesicles from conditioned cell culture media 自由流动电泳允许从条件细胞培养基中快速和可复制地制备细胞外囊泡
Pub Date : 2022-01-01 DOI: 10.20517/evcna.2021.26
S. Staubach, T. Tertel, Bernd Walkenfort, Dominik Buschmann, M. Pfaffl, G. Weber, B. Giebel
Aim: Despite intensive research during the last decade, it remains challenging to prepare extracellular vesicles (EVs) of high purity, especially from primary body liquids or protein-rich conditioned media. For now, time-consuming combinations of at least two orthogonal methods, e.g., density and size separation, are required to enrich EVs to high purity, often at the expense of processing time. Therefore, novel technologies are required that allow EV preparation in acceptable time intervals and to fair purities. Free-flow electrophoresis (FFE) constitutes a well-established semi-preparative method to separate and prepare analytes, e.g., by inherent differences in their electric charges. FFE combines a flow-driven longitudinal transport of sample material with vertical electrophoresis and allows the separation of sample components into up to 96 different fractions. It was our aim to evaluate the potential of FFE for the separation of EVs from other sample components of EV-containing protein-rich conditioned cell culture media. Methods: Exemplarily, conditioned media of mesenchymal stem/stromal cells raised in the presence of EV-containing 10% human platelet lysate were processed. We analyzed the obtained fractions by different technologies, including imaging flow cytometry, western blot and nanoparticle tracking analysis. Results: We demonstrate that FFE quickly and reproducibly separates EVs from a huge proportion of molecules included in the original sample. Conclusion: Our results qualify FFE as a feasible, quick and reproducible technology for the preparation of bona fide EVs.
目的:尽管在过去十年中进行了大量的研究,但制备高纯度的细胞外囊泡(ev)仍然具有挑战性,特别是从原代体液或富含蛋白质的条件培养基中制备。目前,至少需要两种正交方法的耗时组合,例如密度和尺寸分离,才能将电动汽车浓缩到高纯度,通常需要花费处理时间。因此,需要新颖的技术,使EV制备在可接受的时间间隔和公平的纯度。自由流动电泳(FFE)构成了一种成熟的半制备方法来分离和制备分析物,例如,通过其电荷的固有差异。FFE结合了流动驱动的纵向运输样品材料与垂直电泳,并允许样品组分分离成多达96个不同的分数。我们的目的是评估FFE从含有富含蛋白质的ev条件细胞培养基的其他样品组分中分离ev的潜力。方法:例如,在含有10%人血小板裂解液的ev存在下培养间充质干细胞/基质细胞的条件培养基。我们通过不同的技术,包括成像流式细胞术,western blot和纳米颗粒跟踪分析,分析得到的部分。结果:我们证明了FFE快速且可重复性地从原始样品中包含的大部分分子中分离出ev。结论:我们的结果证明FFE是一种可行的、快速的、可重复的制备真正ev的技术。
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引用次数: 4
Alterations in arthropod and neuronal exosomes reduce virus transmission and replication in recipient cells. 节肢动物和神经元外泌体的改变减少了病毒在受体细胞中的传播和复制。
Pub Date : 2022-01-01 DOI: 10.20517/evcna.2022.30
Kehinde Damilare Fasae, Girish Neelakanta, Hameeda Sultana

Aim: Targeting the modes of pathogen shedding/transmission via exosomes or extracellular vesicles has been envisioned as the best approach to control vector-borne diseases. This study is focused on altering exosomes stability to affect the pathogen transmission from infected to naïve recipient cells.

Methods: In this study, neuronal or arthropod exosomes were treated at different temperatures or with different salts or pH conditions to analyze their ability and efficiency in the transmission of tick-borne Langat virus (LGTV) from infected to naïve recipient cells.

Results: Quantitative real-time PCR (qRT-PCR) and immunoblotting analyses revealed that treatment of neuronal or tick exosomes at warmer temperatures of 37 °C or 23 °C, respectively, or with sulfate salts such as Magnesium or Ammonium sulfates or with highly alkaline pH of 9 or 11.5, dramatically reduced transmission of LGTV via infectious exosomes (human or tick cells-derived) to human neuronal (SH-SY5Y) cells or skin keratinocytes (HaCaT cells), respectively.

Conclusion: Overall, this study suggests that exosome-mediated viral transmission of vector-borne pathogens to the vertebrate host or the viral dissemination and replication within or between the mammalian host can be reduced by altering the ability of exosomes with basic changes in temperatures, salts or pH conditions.

目的:针对病原体通过外泌体或细胞外囊泡的脱落/传播模式已被设想为控制媒介传播疾病的最佳方法。这项研究的重点是改变外泌体的稳定性,以影响病原体从感染到naïve受体细胞的传播。方法:在本研究中,神经元或节肢动物外泌体在不同温度或不同盐或pH条件下处理,分析它们将蜱传Langat病毒(LGTV)从感染细胞传播到naïve受体细胞的能力和效率。结果:实时荧光定量PCR (qRT-PCR)和免疫印迹分析显示,分别在37°C或23°C的高温或硫酸镁或硫酸铵等硫酸盐或高碱性pH为9或11.5的条件下处理神经元或蜱虫外体,可显著减少LGTV通过感染性外体(人或蜱虫细胞来源)向人神经元(SH-SY5Y)细胞或皮肤角质形成细胞(HaCaT细胞)的传播。结论:总的来说,本研究表明,通过改变外泌体的能力,温度、盐或pH条件的基本变化可以减少外泌体介导的媒介传播病原体到脊椎动物宿主的病毒传播或哺乳动物宿主内部或之间的病毒传播和复制。
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引用次数: 1
期刊
Extracellular vesicles and circulating nucleic acids
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