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Platform technologies and human cell lines for the production of therapeutic exosomes 用于生产治疗性外泌体的平台技术和人类细胞系
Pub Date : 2021-03-30 DOI: 10.20517/EVCNA.2020.01
Jiyoon L. Kim, Yonghee Song, C. Park, Chulhee Choi
© The Author(s) 2021. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, sharing, adaptation, distribution and reproduction in any medium or format, for any purpose, even commercially, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
©作者2021。开放获取本文遵循知识共享署名4.0国际许可协议(https://creativecommons.org/licenses/by/4.0/),该协议允许不受限制地使用、共享、改编、分发和复制,以任何媒介或格式,用于任何目的,甚至商业目的,只要您适当地注明原作者和来源,提供知识共享许可协议的链接,并注明是否进行了更改。
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引用次数: 19
Distinct fragmentation patterns of circulating viral cell-free DNA in 83,552 non-invasive prenatal testing samples 83,552个非侵入性产前检测样本中循环病毒无细胞DNA的明显碎片模式
Pub Date : 2021-01-01 DOI: 10.20517/evcna.2021.13
Jasper Linthorst, M. Welkers, E. Sistermans
Aim: The fragmentation characteristics of cell-free DNA (cfDNA) are informative biomarkers in liquid biopsies, including non-invasive prenatal testing (NIPT), as they provide insights into the origins of the cfDNA. Viral infections by DNA viruses can contribute to the available cfDNA in these samples. Here, we characterize the fragment size distribution of viral cfDNA fragments obtained from available anonymous NIPT samples. Methods: A viral database of 224 DNA viruses was generated from the NCBI RefSeq viral database. Paired-end cfDNA sequencing reads from 83.522 NIPT samples that did not map to any of the human chromosomes, or mitochondrial DNA of the human reference genome build GRCh38 (excluding alternative and unplaced contigs) were remapped to the generated viral database. Reads mapping to the 14 most abundant DNA viruses were selected, and fragment size distributions were analyzed in detail. Results: Distinct fragmentation patterns were identified for several DNA viruses, most likely due to differences in viral tropism, chromatinization (binding of nucleosomes), and the topology of the viral DNA. In high viral load parvo B19 positive samples, the fragment size distribution differed between samples, potentially reflecting the state of the infection. Page 229 Linthorst et al. Extracell Vesicles Circ Nucleic Acids 2021;2:228-37 https://dx.doi.org/10.20517/evcna.2021.13 Conclusion: These findings outline the potential for liquid biopsies to elucidate the dynamics behind the viral infection, which may potentially have various clinical applications. Our data provide preliminary insights on the use of fragmentomics of viral cfDNA to distinguish between reactivation, reinfection, and primary infection and monitoring the state of viral infections.
目的:无细胞DNA (cfDNA)的碎片特征是液体活检中信息丰富的生物标志物,包括非侵入性产前检测(NIPT),因为它们提供了对cfDNA起源的见解。DNA病毒的病毒感染可导致这些样品中可用的cfDNA。在这里,我们描述了从可用的匿名NIPT样本中获得的病毒cfDNA片段的片段大小分布。方法:从NCBI RefSeq病毒数据库中生成224个DNA病毒的病毒库。从83.522份NIPT样本(未映射到任何人类染色体或人类参考基因组构建GRCh38的线粒体DNA(不包括替代和未放置的contigs)中获得的配对端cfDNA测序reads被重新映射到生成的病毒数据库中。选择了14个最丰富的DNA病毒的Reads,并详细分析了片段大小分布。结果:在几种DNA病毒中发现了不同的片段模式,这很可能是由于病毒的趋向性、染色质化(核小体的结合)和病毒DNA的拓扑结构的差异。在高病毒载量的细小B19阳性样本中,样本之间的片段大小分布不同,可能反映了感染状态。第229页Linthorst等人。细胞外囊泡Circ核酸2021;2:28 -37 https://dx.doi.org/10.20517/evcna.2021.13结论:这些发现概述了液体活检在阐明病毒感染背后的动力学方面的潜力,这可能具有各种临床应用价值。我们的数据为使用病毒cfDNA片段组学来区分再激活、再感染和原发感染以及监测病毒感染状态提供了初步的见解。
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引用次数: 3
Function of exosomes in neurological disorders and brain tumors. 外泌体在神经系统疾病和脑肿瘤中的功能。
Pub Date : 2021-01-01 Epub Date: 2021-03-30 DOI: 10.20517/evcna.2021.04
Lan Xiao, Sangeetha Hareendran, Y Peng Loh

Exosomes are a subtype of extracellular vesicles released from different cell types including those in the nervous system, and are enriched in a variety of bioactive molecules such as RNAs, proteins and lipids. Numerous studies have indicated that exosomes play a critical role in many physiological and pathological activities by facilitating intercellular communication and modulating cells' responses to external environments. Particularly in the central nervous system, exosomes have been implicated to play a role in many neurological disorders such as abnormal neuronal development, neurodegenerative diseases, epilepsy, mental disorders, stroke, brain injury and brain cancer. Since exosomes recapitulate the characteristics of the parental cells and have the capacity to cross the blood-brain barrier, their cargo can serve as potential biomarkers for early diagnosis and clinical assessment of disease treatment. In this review, we describe the latest findings and current knowledge of the roles exosomes play in various neurological disorders and brain cancer, as well as their application as promising biomarkers. The potential use of exosomes to deliver therapeutic molecules to treat diseases of the central nervous system is also discussed.

外泌体是从包括神经系统细胞在内的不同类型细胞释放出来的细胞外囊泡的一种亚型,富含多种生物活性分子,如核糖核酸、蛋白质和脂质。大量研究表明,外泌体通过促进细胞间通信和调节细胞对外部环境的反应,在许多生理和病理活动中发挥着关键作用。特别是在中枢神经系统中,外泌体被认为在神经元发育异常、神经退行性疾病、癫痫、精神障碍、中风、脑损伤和脑癌等多种神经系统疾病中发挥作用。由于外泌体能再现亲代细胞的特征,并有能力穿过血脑屏障,因此其载体可作为潜在的生物标记物,用于疾病的早期诊断和临床治疗评估。在这篇综述中,我们将介绍外泌体在各种神经系统疾病和脑癌中发挥作用的最新发现和现有知识,以及它们作为有前景的生物标记物的应用。我们还讨论了外泌体用于递送治疗分子以治疗中枢神经系统疾病的潜力。
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引用次数: 0
Isolation and characterization of extracellular vesicles in saliva of children with asthma. 哮喘患儿唾液中细胞外囊泡的分离与表征。
Pub Date : 2021-01-01 Epub Date: 2021-03-30 DOI: 10.20517/evcna.2020.09
Nicole Comfort, Tessa R Bloomquist, Alex P Shephard, Carter R Petty, Amparito Cunningham, Marissa Hauptman, Wanda Phipatanakul, Andrea Baccarelli

Aim: To confirm the presence of extracellular vesicles (EVs) in cell-free saliva (CFS) of children with asthma and describe the isolated EV population.

Methods: A pooled sample of CFS EVs isolated from 180 participants using ExoQuick-TC was examined in downstream analyses. Transmission electron microscopy (TEM) was used to confirm the presence of EVs. Nanoparticle tracking analysis (NTA) and single particle interferometric reflectance imaging sensing (SP-IRIS) with fluorescence were used for sizing, counting, and phenotyping of EVs. Capillary immunoassays were used for protein quantitation.

Results: TEM confirmed the presence of EVs of diverse sizes, indicating the prep contained a heterogeneous population of EVs. Capillary immunoassays confirmed the presence of EV-associated proteins (CD9, CD63, CD81, ICAM-1, and ANXA5) and indicated limited cellular contamination. As others have also reported, there were discrepancies in the EV sizing and enumeration across platforms. Fluorescent NTA detected particles with a mode diameter of ~90 nm, whereas SP-IRIS reported sizes of ~55-60 nm that more closely approximated the TEM results. Consistent with protein immunoassay results, SP-IRIS with fluorescence showed that the majority of these EVs were CD9- and CD63-positive, with little expression of CD81.

Conclusion: EVs from CFS can be isolated using a high-throughput method that can be scaled to large epidemiological studies. To our knowledge, we are the first to characterize CFS EVs from patients with asthma. The use of CFS EVs as potential novel biomarkers in asthma warrants further investigation and opens a new avenue of research for future studies.

目的:证实哮喘儿童无细胞唾液(CFS)中存在细胞外小泡(EV),并描述分离的EV群体。方法:在下游分析中检查使用ExoQuick TC从180名参与者中分离的CFS EV的合并样本。使用透射电子显微镜(TEM)来确认EV的存在。纳米颗粒跟踪分析(NTA)和具有荧光的单粒子干涉反射成像传感(SP-IRIS)用于EV的尺寸、计数和表型。毛细管免疫测定法用于蛋白质定量。结果:TEM证实了不同大小EV的存在,表明该制剂含有异质性EV群体。毛细管免疫测定证实了EV相关蛋白(CD9、CD63、CD81、ICAM-1和ANXA5)的存在,并表明细胞污染有限。正如其他人也报告的那样,不同平台的电动汽车规模和枚举存在差异。荧光NTA检测到模式直径约为90 nm的颗粒,而SP-IRIS报告的尺寸约为55-60 nm,更接近TEM结果。与蛋白质免疫测定结果一致,荧光SP-IRIS显示这些EVs中的大多数是CD9-和CD63阳性,很少有CD81表达。结论:可以使用高通量方法从慢性疲劳综合征中分离EVs,该方法可以用于大规模流行病学研究。据我们所知,我们是第一个对哮喘患者的慢性疲劳综合征EVs进行表征的人。CFS-EVs作为哮喘潜在的新型生物标志物的使用值得进一步研究,并为未来的研究开辟了新的研究途径。
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引用次数: 13
Erratum: Isolation and analysis methods of extracellular vesicles (EVs) 勘误:细胞外囊泡(EVs)的分离和分析方法
Pub Date : 2021-01-01 DOI: 10.20517/evcna.2021.15
Zheng Zhao, H. Wijerathne, A. Godwin, S. Soper
© The Author(s) 2021. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, sharing, adaptation, distribution and reproduction in any medium or format, for any purpose, even commercially, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
©作者2021。开放获取本文遵循知识共享署名4.0国际许可协议(https://creativecommons.org/licenses/by/4.0/),该协议允许不受限制地使用、共享、改编、分发和复制,以任何媒介或格式,用于任何目的,甚至商业目的,只要您适当地注明原作者和来源,提供知识共享许可协议的链接,并注明是否进行了更改。
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引用次数: 1
Bioengineered extracellular vesicle-loaded bioscaffolds for therapeutic applications in regenerative medicine. 用于再生医学治疗应用的生物工程细胞外囊载体生物支架。
Pub Date : 2021-01-01 Epub Date: 2021-06-30 DOI: 10.20517/evcna.2021.10
Sabrina Lazar, Sirjan Mor, Jianing Chen, Dake Hao, Aijun Wang

Extracellular vesicle (EV)-based technologies represent a new advancement for disease treatment. EVs can be administered systemically, injected into the injury site directly, or applied locally in conjunction with bioengineered implantable scaffolds. Matrix-bound vesicles (MBVs), a special class of vesicles localized in association with the extracellular matrix (ECM), have been identified as critical bioactive factors and shown to mediate significant regenerative functions of ECM scaffolds. Loading EVs onto bioscaffolds to mimic the MBV-ECM complex has been shown superior to EV bolus injection in recent in vivo studies, such as in providing enhanced tissue regeneration, EV retention rates, and healing efficacy. Different types of natural biomaterials, synthetic polymers, and ceramics have been developed for EV loading, and these EV functionalized biomaterials have been applied in different areas for disease treatment. The EV functionalized scaffolds can be designed to be biodegradable, off-the-shelf biomaterials as a delivery vehicle for EVs. Overall, the bioengineered EV-loaded bioscaffolds represent a promising approach for cell-free treatment in clinical applications.

基于细胞外囊泡(EV)的技术是疾病治疗的新进展。细胞外囊泡可以全身给药、直接注射到受伤部位或与生物工程植入支架一起局部应用。基质结合囊泡(MBVs)是一类与细胞外基质(ECM)结合的特殊囊泡,已被确定为关键的生物活性因子,并被证明能介导 ECM 支架的重要再生功能。在最近的体内研究中,在生物支架上加载 EV 以模拟 MBV-ECM 复合物已被证明优于 EV 栓注,例如在增强组织再生、EV 保留率和愈合效果方面。目前已开发出不同类型的天然生物材料、合成高分子材料和陶瓷,用于EV负载,这些EV功能化生物材料已被应用于不同领域的疾病治疗。EV 功能化支架可设计成生物可降解的现成生物材料,作为 EV 的输送载体。总之,生物工程EV负载生物支架是临床应用中一种很有前景的无细胞治疗方法。
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引用次数: 0
RANKL and RANK in extracellular vesicles: surprising new players in bone remodeling. 细胞外囊泡中的RANKL和RANK:骨重塑中令人惊讶的新参与者。
Pub Date : 2021-01-01 Epub Date: 2021-03-30 DOI: 10.20517/evcna.2020.02
L Shannon Holliday, Shivani S Patel, Wellington J Rody
Receptor activator of nuclear factor kappa B-ligand (RANKL), its receptor RANK, and osteoprotegerin which binds RANKL and acts as a soluble decoy receptor, are essential controllers of bone remodeling. They also play important roles in establishing immune tolerance and in the development of the lymphatic system and mammary glands. In bone, RANKL stimulates osteoclast formation by binding RANK on osteoclast precursors and osteoclasts. This is required for bone resorption. Recently, RANKL and RANK have been shown to be functional components of extracellular vesicles (EVs). Data linking RANKL and RANK in EVs to biological regulatory roles are reviewed, and crucial unanswered questions are examined. RANKL and RANK are transmembrane proteins and their presence in EVs allows them to act at a distance from their cell of origin. Because RANKL-bearing osteocytes and osteoblasts are often spatially distant from RANK-containing osteoclasts in vivo, this may be crucial for the stimulation of osteoclast formation and bone resorption. RANK in EVs from osteoclasts has the capacity to stimulate a RANKL reverse signaling pathway in osteoblasts that promotes bone formation. This serves to couple bone resorption with bone formation and has inspired novel bifunctional therapeutic agents. RANKL- and RANK- containing EVs in serum may serve as biomarkers for bone and immune pathologies. In summary, EVs containing RANKL and RANK have been identified as intercellular regulators in bone biology. They add complexity to the central signaling network responsible for maintaining bone. RANKL- and RANK-containing EVs are attractive as drug targets and as biomarkers.
核因子κ b配体受体激活剂(RANKL)及其受体RANK和结合RANKL并作为可溶性诱饵受体的骨保护素是骨重塑的重要控制者。它们在建立免疫耐受以及淋巴系统和乳腺的发育中也起着重要作用。在骨中,RANKL通过将RANK与破骨细胞前体和破骨细胞结合来刺激破骨细胞的形成。这是骨吸收所必需的。最近,RANKL和RANK被证明是细胞外囊泡(EVs)的功能成分。本文回顾了ev中RANKL和RANK与生物调控作用的数据联系,并对关键的未解问题进行了研究。RANKL和RANK是跨膜蛋白,它们在电动汽车中的存在使它们能够在远离其起源细胞的距离上发挥作用。由于携带rankl的骨细胞和成骨细胞在体内通常与含有rankl的破骨细胞在空间上距离较远,这可能对刺激破骨细胞形成和骨吸收至关重要。来自破骨细胞的ev中的RANK能够刺激成骨细胞中的RANKL反向信号通路,从而促进骨形成。这有助于骨吸收与骨形成的耦合,并激发了新的双功能治疗剂。血清中含有RANKL和RANK的ev可作为骨和免疫病理的生物标志物。综上所述,含有RANKL和RANK的ev已被确定为骨生物学中的细胞间调节因子。它们增加了负责维持骨骼的中央信号网络的复杂性。RANKL-和含有RANKL的ev作为药物靶点和生物标志物具有很大的吸引力。
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引用次数: 16
Isolation and analysis methods of extracellular vesicles (EVs). 细胞外囊泡(EVs)的分离与分析方法。
Pub Date : 2021-01-01 Epub Date: 2020-03-30 DOI: 10.20517/evcna.2021.07
Zheng Zhao, Harshani Wijerathne, Andrew K Godwin, Steven A Soper

Extracellular vesicles (EVs) have been recognized as an evolving biomarker within the liquid biopsy family. While carrying both host cell proteins and different types of RNAs, EVs are also present in sufficient quantities in biological samples to be tested using many molecular analysis platforms to interrogate their content. However, because EVs in biological samples are comprised of both disease and non-disease related EVs, enrichment is often required to remove potential interferences from the downstream molecular assay. Most benchtop isolation/enrichment methods require > milliliter levels of sample and can cause varying degrees of damage to the EVs. In addition, some of the common EV benchtop isolation methods do not sort the diseased from the non-diseased related EVs. Simultaneously, the detection of the overall concentration and size distribution of the EVs is highly dependent on techniques such as electron microscopy and Nanoparticle Tracking Analysis, which can include unexpected variations and biases as well as complexity in the analysis. This review discusses the importance of EVs as a biomarker secured from a liquid biopsy and covers some of the traditional and non-traditional, including microfluidics and resistive pulse sensing, technologies for EV isolation and detection, respectively.

细胞外囊泡(EVs)已被认为是液体活检家族中一个不断发展的生物标志物。在携带宿主细胞蛋白和不同类型rna的同时,ev在生物样品中也有足够数量的存在,可以使用许多分子分析平台来检测其含量。然而,由于生物样品中的ev由疾病和非疾病相关的ev组成,因此通常需要富集以消除下游分子分析的潜在干扰。大多数台式分离/富集方法需要>毫升级别的样品,并可能对ev造成不同程度的损害。此外,一些常见的台式隔离方法没有将患病的相关EV与非患病的相关EV进行分类。同时,电动汽车的总体浓度和大小分布的检测高度依赖于电子显微镜和纳米颗粒跟踪分析等技术,这些技术可能包括意想不到的变化和偏差以及分析中的复杂性。本文讨论了从液体活检中获得的EV作为生物标志物的重要性,并涵盖了一些传统和非传统的EV分离和检测技术,包括微流体技术和电阻脉冲传感技术。
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引用次数: 52
Meeting report of the 4th autumn meeting of the German Society of Extracellular Vesicles (GSEV): cutting edge EV research driven by young scientists 德国细胞外囊泡学会(GSEV)第四届秋季会议报告:由青年科学家推动的前沿EV研究
Pub Date : 2021-01-01 DOI: 10.20517/evcna.2021.23
Eva-Maria Krämer-Albers, E. Pogge von Strandmann, G. Fuhrmann, I. Nazarenko, B. Giebel, M. Pfaffl
© The Author(s) 2021. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, sharing, adaptation, distribution and reproduction in any medium or format, for any purpose, even commercially, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
©作者2021。开放获取本文遵循知识共享署名4.0国际许可协议(https://creativecommons.org/licenses/by/4.0/),该协议允许不受限制地使用、共享、改编、分发和复制,以任何媒介或格式,用于任何目的,甚至商业目的,只要您适当地注明原作者和来源,提供知识共享许可协议的链接,并注明是否进行了更改。
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引用次数: 0
Year-end reflections of EVCNA-2021 EVCNA-2021的年终反思
Pub Date : 2021-01-01 DOI: 10.20517/evcna.2021.27
Y. P. Loh
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引用次数: 0
期刊
Extracellular vesicles and circulating nucleic acids
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