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Hydrogen gas and the gut microbiota are potential biomarkers for the development of experimental colitis in mice 氢气和肠道微生物群是小鼠实验性结肠炎发展的潜在生物标志物
Pub Date : 2023-11-06 DOI: 10.1017/gmb.2023.17
Yuta Fujiki, Takahisa Tanaka, Kyosuke Yakabe, Natsumi Seki, Masahiro Akiyama, Ken Uchida, Yun-Gi Kim
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引用次数: 0
GUT METABOLOMIC PROFILES IN PEDIATRIC ULCERATIVE COLITIS PATIENTS PRIOR TO AND AFTER RECEIVING FECAL MICROBIOTA TRANSPLANTS 儿童溃疡性结肠炎患者接受粪便菌群移植前后的肠道代谢组学特征
Pub Date : 2023-10-06 DOI: 10.1017/gmb.2023.15
Parastou S. Khalessi Hosseini, Beibei Wang, Yihui Luan, Fengzhu Sun, Sonia Michail
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引用次数: 0
The butyrate-producing and spore-forming bacterial genus Coprococcus as a potential biomarker for neurological disorders 产丁酸盐和形成孢子的细菌属粪原球菌作为神经系统疾病的潜在生物标志物
Pub Date : 2023-08-30 DOI: 10.1017/gmb.2023.14
F. Notting, W. Pirovano, W. Sybesma, R. Kort
Abstract Coprococcus as a potential biomarker and modulator of neurological disorders. 1. Ingestion of C. eutactus spores during early infancy. 2. Germination of spores in the gut. 3. A fibre-rich diet strengthens colonisation of C. eutactus. 4. C. eutactus produces short-chain fatty acids (SCFAs) during fibre fermentation. It has multiple butyrate production pathways. 5. Colonocytes take up SCFAs via facilitated diffusion or via free fatty acid receptors (FFARs). Butyrate metabolism by colonocytes improves the epithelial barrier function. 6. The uptake of SCFAs leads to the secretion of glucagon-like peptide 1 (GLP-1) and anorexigenic peptide YY (PYY). These peptides suppress appetite and may have neurological effects. 7. The gut–brain axis constitutes SCFAs and peptides transported via the blood or SCFA signalling via the vagus nerve. The implied neurological effects are indicated in the top-right corner. *Specifically associated with C. eutactus. a.a., amino acids; BBB, blood–brain barrier; HPA, hypothalamic–pituitary–adrenal; OCD, obsessive–compulsive disorder. Created with BioRender.com. Abstract The host–intestinal microbiome interaction has gained much scientific attention in the past two decades, boosted by advances in DNA sequencing and cultivation techniques. An accumulating amount of evidence shows that gut microbes play crucial roles in gut homeostasis, immune system education, and are associated with quality-of-life indicators. Beneficial health factors are associated with the digestion of dietary fibres in the colon and the subsequent production of short-chain fatty acids, including acetate, propionate, and butyrate. Coprococcus is a butyrate-producing genus in the phylum Firmicutes, and its abundance is inversely correlated with several neuropsychological and neurodegenerative disorders. Case–control studies provide strong evidence of decreased abundance of Coprococcus spp. in depressed individuals. The species Coprococcus eutactus has the unique capacity to use two separate pathways for butyrate synthesis and has been found to be depleted in children with delayed language development and adults with Parkinson’s disease. The combined literature on Coprococcus and the gut microbiota–brain axis points towards enhanced butyrate production and reduced colonisation of pathogenic clades as factors explaining its association with health effects. The genus Coprococcus is a promising candidate for a mental health biomarker and an interesting lead for novel dietary-based preventive therapies for specific neurological disorders.
摘要:粪球菌是神经系统疾病的潜在生物标志物和调节剂。1. 婴儿期早期摄入的活菌孢子。2. 孢子在肠道中萌发。3.富含纤维的饮食加强了白僵菌的定植。4. C. eutactus在纤维发酵过程中产生短链脂肪酸(SCFAs)。它有多种丁酸盐生产途径。5. 结肠细胞通过促进扩散或通过游离脂肪酸受体(FFARs)吸收SCFAs。结肠细胞的丁酸盐代谢可改善上皮屏障功能。6. SCFAs的摄取导致胰高血糖素样肽1 (GLP-1)和厌氧肽YY (PYY)的分泌。这些多肽抑制食欲,并可能对神经系统有影响。7. 肠-脑轴构成SCFA和肽通过血液运输或SCFA信号通过迷走神经。在右上角显示了隐含的神经学效应。*与C. eutactus特异性相关。A.a,氨基酸;血脑屏障;HPA -肾上腺;强迫症,强迫性精神障碍。创建与BioRender.com。在过去的二十年中,随着DNA测序和培养技术的进步,宿主-肠道微生物组相互作用得到了广泛的科学关注。越来越多的证据表明,肠道微生物在肠道内稳态、免疫系统教育和生活质量指标中起着至关重要的作用。有益的健康因素与结肠中膳食纤维的消化以及随后产生的短链脂肪酸(包括乙酸、丙酸和丁酸)有关。粪球菌是厚壁菌门中的一种产丁酸盐属,其丰度与几种神经心理和神经退行性疾病呈负相关。病例对照研究提供了强有力的证据,表明抑郁个体中粪球菌的丰度降低。该物种具有独特的能力,利用两种不同的途径合成丁酸盐,并已发现在语言发育迟缓的儿童和患有帕金森病的成人中缺乏丁酸盐。关于粪球菌和肠道微生物群-脑轴的综合文献指出,丁酸盐产量增加和致病性分支定植减少是解释其与健康影响相关的因素。粪球菌属是一种很有希望的心理健康生物标志物,也是一种基于饮食的新型神经系统疾病预防疗法的有趣先导。
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引用次数: 0
Risk of bias assessment tool for systematic review and meta-analysis of the gut microbiome 用于肠道微生物组系统综述和荟萃分析的偏倚风险评估工具
Pub Date : 2023-08-18 DOI: 10.1017/gmb.2023.12
Thomas Lampeter, Charles Love, T. T. Tang, Aditi Marella, H. Y. Lee, Armani K Oganyan, Devin Moffat, Anisha Kareem, Matthew Rusling, Aubrey Massmann, Melanie Orr, C. Bongiorno, Lilian Yuan
Abstract Risk of bias assessment is a critical step of any meta-analysis or systematic review. Given the low sample count of many microbiome studies, especially observational or cohort studies involving human subjects, many microbiome studies have low power. This increases the importance of performing meta-analysis and systematic review for microbiome research in order to enhance the relevance and applicability of microbiome results. This work proposes a method based on the ROBINS-I tool to systematically consider sources of bias in microbiome research seeking to perform meta-analysis or systematic review for microbiome studies.
偏倚风险评估是任何荟萃分析或系统评价的关键步骤。鉴于许多微生物组研究的样本数很少,特别是涉及人类受试者的观察性或队列研究,许多微生物组研究的有效性很低。这增加了对微生物组研究进行荟萃分析和系统评价的重要性,以提高微生物组研究结果的相关性和适用性。本工作提出了一种基于ROBINS-I工具的方法,以系统地考虑微生物组研究中的偏倚来源,寻求对微生物组研究进行荟萃分析或系统评价。
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引用次数: 0
Multiomics characterisation of the zoo-housed gorilla gut microbiome reveals bacterial community compositions shifts, fungal cellulose-degrading, and archaeal methanogenic activity 动物园饲养的大猩猩肠道微生物组的多组学特征揭示了细菌群落组成变化,真菌纤维素降解和古细菌产甲烷活性
Pub Date : 2023-07-19 DOI: 10.1017/gmb.2023.11
I. Houtkamp, M. van Zijll Langhout, M. Bessem, W. Pirovano, R. Kort
Abstract Abstract We carried out a comparative analysis between the bacterial microbiota composition of zoo-housed western lowland gorillas and their wild counterparts through 16S rRNA gene amplicon sequencing. In addition, we characterised the carbohydrate-active and methanogenic potential of the zoo-housed gorilla (ZHG) microbiome through shotgun metagenomics and RNA sequencing. The ZHG microbiota showed increased alpha diversity in terms of bacterial species richness and a distinct composition from that of the wild gorilla microbiota, including a loss of abundant fibre-degrading and hydrogenic Chloroflexi. Metagenomic analysis of the CAZyome indicated predominant oligosaccharide-degrading activity, while RNA sequencing revealed diverse cellulase and hemi-cellulase activities in the ZHG gut, contributing to a total of 268 identified carbohydrate-active enzymes. Metatranscriptome analysis revealed a substantial contribution of 38% of the transcripts from anaerobic fungi and archaea to the gorilla microbiome. This activity originates from cellulose-degrading and hydrogenic fungal species belonging to the class Neocallimastigomycetes, as well as from methylotrophic and hydrogenotrophic methanogenic archaea belonging to the classes Thermoplasmata and Methanobacteria, respectively. Our study shows the added value of RNA sequencing in a multiomics approach and highlights the contribution of eukaryotic and archaeal activities to the gut microbiome of gorillas.
摘要通过16S rRNA基因扩增子测序,对西部低地大猩猩与野生大猩猩的细菌菌群组成进行了比较分析。此外,我们通过鸟枪宏基因组学和RNA测序表征了动物园大猩猩(ZHG)微生物组的碳水化合物活性和产甲烷潜力。与野生大猩猩微生物群相比,ZHG微生物群在细菌种类丰富度和组成上表现出更高的α多样性,包括丰富的纤维降解和氢氯氟酸的丧失。CAZyome的宏基因组分析表明,低聚糖降解活性占主导地位,而RNA测序显示,ZHG肠道中存在多种纤维素酶和半纤维素酶活性,共鉴定出268种碳水化合物活性酶。元转录组分析显示,厌氧真菌和古细菌对大猩猩微生物组的转录本有38%的实质性贡献。这种活性来源于纤维素降解真菌和产氢真菌,它们分别属于neocallimastigomycates类,以及甲基营养型和氢营养型产甲烷古细菌,它们分别属于热原菌类和甲烷细菌类。我们的研究显示了RNA测序在多组学方法中的附加价值,并突出了真核生物和古细菌活动对大猩猩肠道微生物组的贡献。
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引用次数: 0
Regular consumption of lacto-fermented vegetables has greater effects on the gut metabolome compared with the microbiome 与微生物组相比,经常食用乳酸发酵蔬菜对肠道代谢组的影响更大
Pub Date : 2023-06-29 DOI: 10.1017/gmb.2023.9
Kylene Guse, A. Sharma, Emily Weyenberg, Samuel Davison, Yiwei Ma, Yuni Choi, A. Johnson, Chi Chen, A. Gomez
Abstract The industrialisation of Western food systems has reduced the regular consumption of lacto-fermented vegetables (LFV). Consuming LFV may exert health benefits through the alteration of the gut microbiome, but the mechanisms involved remain unclear. To start understanding the possible benefits of LFV, we compared faecal microbial diversity and composition, as well as dietary habits between individuals who regularly consume LFV (n = 23) and those who do not (n = 24). We utilised microbial DNA amplicon sequencing (16S rRNA and ITS2) and untargeted metabolomics (LC–MS) to analyse stool samples. Study participants also provided three consecutive days of dietary data. Results show minor effects on microbiome composition; with the enrichment of a few microorganisms potentially associated with vegetable ferments, such as Leuconostoc mesenteroides and Rhodotorula mucilaginosa (P < 0.05), in LFV consumers. However, LFV consumption had greater effects on the faecal metabolome, with higher abundances of butyrate, acetate, and valerate (P < 0.05) and significantly greater metabolome diversity (P < 0.001). Overall, the observations of minor changes in the faecal microbiome and greater effects on the faecal metabolome from LFV consumption warrant further investigations on the health significance of LFV as regular components of the daily diet in humans.
摘要西方食品体系的工业化减少了乳发酵蔬菜(LFV)的常规消费。食用LFV可能通过改变肠道微生物组对健康有益,但其机制尚不清楚。为了开始了解LFV的可能益处,我们比较了经常食用LFV(n=23)和不食用LFV的个体(n=24)的粪便微生物多样性和组成以及饮食习惯。我们利用微生物DNA扩增子测序(16S rRNA和ITS2)和非靶向代谢组学(LC–MS)来分析粪便样本。研究参与者还提供了连续三天的饮食数据。结果显示对微生物组组成的影响较小;LFV消费者中富集了一些可能与蔬菜发酵物有关的微生物,如间质明串珠菌和粘液红酵母(P<0.05)。然而,LFV的消耗对粪便代谢组的影响更大,丁酸、乙酸和戊酸的丰度更高(P<0.05),代谢组多样性显著更大(P<0.001)。总体而言,观察到LFV消费对粪便微生物组的微小变化和对粪便代谢组的更大影响,有必要对LFV作为人类日常饮食的常规成分的健康意义进行进一步研究。
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引用次数: 0
The intestinal microbiota as an ally in the treatment of Alzheimer’s disease 肠道菌群在治疗阿尔茨海默病中的作用
Pub Date : 2023-06-19 DOI: 10.1017/gmb.2023.8
Sabrina Sehn Hilgert, D. Dias
Abstract The evolution of the understanding of the intestinal microbiota and its influence on our organism leverages it as a potential protagonist in therapies aimed at diseases that affect not only the intestine but also neural pathways and the central nervous system itself. This study, developed from a thorough systematic review, sought to demonstrate the influence of the intervention on the intestinal microbiota in subjects with Alzheimer’s disease. Clinical trials using different classes of probiotics have depicted noteworthy remission of symptoms, whose measurement was performed based on screenings and scores applied before, during, and after the period of probiotics use, allowing the observation of changes in functionality and symptomatology of patients. On the other hand, faecal microbiota transplantation requires further validation through clinical trials, even though it has already been reported in case studies as promising from the symptomatology point of view. The current compilation of studies made it possible to demonstrate the potential influence of the intestinal microbiota on Alzheimer’s pathology. However, new clinical studies with a larger number of participants are needed to obtain further clarification on pathophysiological correlations.
对肠道微生物群及其对我们机体影响的理解的演变使其成为针对不仅影响肠道而且影响神经通路和中枢神经系统本身的疾病的治疗的潜在主角。这项研究,从一个彻底的系统回顾发展,试图证明干预对阿尔茨海默病患者肠道微生物群的影响。使用不同种类益生菌的临床试验描述了显著的症状缓解,其测量是基于使用益生菌之前,期间和之后的筛选和评分,允许观察患者功能和症状的变化。另一方面,粪便微生物群移植需要通过临床试验进一步验证,尽管从症状学的角度来看,它已经在案例研究中被报道为有希望的。目前的研究汇编使证明肠道微生物群对阿尔茨海默病病理的潜在影响成为可能。然而,需要更多参与者的新临床研究来进一步阐明病理生理相关性。
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引用次数: 0
The gut microbiota-neuroimmune crosstalk and neuropathic pain: a scoping review 肠道微生物群-神经免疫串扰和神经性疼痛:范围综述
Pub Date : 2023-06-19 DOI: 10.1017/gmb.2023.7
G. Nawarathna, K. Fakhruddin, A. Shorbagi, L. Samaranayake
Abstract Environmental stressors can disrupt the gut–brain relationship and alter the gut microbial composition, potentially leading to chronic pain, including neuropathic pain (NP). To understand this complex relationship, we conducted a systematic scoping review to examine the gut microbial-neuroimmune connection to NP and the potential therapeutic targets. The review includes English-language manuscripts in databases such as MEDLINE, Cochrane, and DOAJ between January 2000 and April 2022. Out of the 48 full texts examined, only 15 articles met the inclusion criteria. These included a randomised controlled trial involving 327 individuals, an in vitro, and 13 animal model studies. The findings suggest that the gut flora plays a role in the immunological, neurological, and metabolic signalling pathways associated with NP. Animal studies have been the primary focus in this area, indicating that an imbalanced-gut microbiome and subsequent activation of biochemical and neuro-immunologic pathways may influence the development of NP. This review provides a comprehensive summary of the gut microbiome-immune-NP axis and identifies potential therapeutic targets. However, since most of the evidence comes from animal studies, future research should include clinical trials to gain a better understanding of the role of gut microbiota in NP and discover new therapeutic strategies.
摘要环境压力源会破坏肠脑关系并改变肠道微生物组成,可能导致慢性疼痛,包括神经性疼痛(NP)。为了理解这种复杂的关系,我们进行了一项系统的范围界定审查,以检查肠道微生物神经免疫与NP的联系以及潜在的治疗靶点。该综述包括2000年1月至2022年4月期间MEDLINE、Cochrane和DOAJ等数据库中的英文手稿。在审查的48篇全文中,只有15篇符合纳入标准。其中包括一项涉及327名个体的随机对照试验、一项体外试验和13项动物模型研究。研究结果表明,肠道菌群在与NP相关的免疫、神经和代谢信号通路中发挥作用。动物研究一直是这一领域的主要焦点,表明肠道微生物组失衡以及随后生物化学和神经免疫通路的激活可能会影响NP的发展。这篇综述对肠道微生物组免疫NP轴进行了全面总结,并确定了潜在的治疗靶点。然而,由于大多数证据来自动物研究,未来的研究应包括临床试验,以更好地了解肠道微生物群在NP中的作用,并发现新的治疗策略。
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引用次数: 0
Modulation of gut microbiota by diet and probiotics: potential approaches to prevent gestational diabetes mellitus 饮食和益生菌对肠道微生物群的调节:预防妊娠期糖尿病的潜在途径
Pub Date : 2023-06-13 DOI: 10.1017/gmb.2023.6
M. Cruz, Sarah Azinheiro, S. Pereira
Abstract Gestational diabetes mellitus (GDM) is a rising global health problem that affects approximately 6% of pregnant women. Lifestyle interventions, particularly diet, and exercise are the first-line treatment, followed by pharmacotherapy, but with associated side effects to both mother and offspring. Modulation of gut microbiota may help prevent or manage GDM. Some gut bacterial groups associated with GDM are also associated with inflammatory biomarkers and gut dysbiosis. Available literature reports that low-glycaemic index diet reduces maternal fasting and 2-hour postprandial glucose and maintains a beneficial gut bacterial composition. Pre- and probiotics can aid GDM therapy by modulating gut microbiota to eubiotic status and improving glucose metabolism. Probiotics as adjuvant GDM therapy should consider bacterial strains, dosage, and treatment duration. Limitations in their use require further studies to develop specific probiotic-based GDM supplement therapy that impacts glycaemic control and inflammatory status by reducing fasting plasma glucose, insulin resistance, and improving lipid profiles of pregnant women.
摘要妊娠期糖尿病(GDM)是一个日益严重的全球健康问题,约有6%的孕妇受到影响。生活方式干预,特别是饮食和锻炼是一线治疗,其次是药物治疗,但对母亲和后代都有相关的副作用。肠道微生物群的调节可能有助于预防或管理GDM。一些与GDM相关的肠道细菌群也与炎症生物标志物和肠道微生态失调有关。现有文献报道,低血糖指数饮食可降低产妇禁食和餐后2小时血糖,并保持有益的肠道细菌组成。益生素和益生菌可以通过调节肠道微生物群达到共生状态和改善葡萄糖代谢来帮助GDM治疗。益生菌作为GDM的辅助治疗应考虑菌株、剂量和治疗时间。其使用的局限性需要进一步研究,以开发特定的基于益生菌的GDM补充剂疗法,通过降低空腹血糖、胰岛素抵抗和改善孕妇的脂质状况来影响血糖控制和炎症状态。
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引用次数: 0
White kidney bean extract as a nutraceutical: effects on gut microbiota, alpha-amylase inhibition, and user experiences 白芸豆提取物作为营养品:对肠道微生物群、α-淀粉酶抑制和用户体验的影响
Pub Date : 2023-06-01 DOI: 10.1017/gmb.2023.5
D. Houghton, O. Shannon, P. Chater, M. Wilcox, J. Pearson, Kyle J. Stanforth, C. Jordan, L. Avery, A. Blain, Abraham Joel, Ruth Jeffers, R. Nolan, A. Nelson, C. Stewart, F. Malcomson
Abstract White kidney bean extract (WKBE) is a nutraceutical often advocated as an anti-obesity agent. The main proposed mechanism for these effects is alpha-amylase inhibition, thereby slowing carbohydrate digestion and absorption. Thus, it is possible that WKBE could impact the gut microbiota and modulate gut health. We investigated the effects of supplementing 20 healthy adults with WKBE for 1 week in a randomised, placebo-controlled crossover trial on the composition of the gut microbiota, gastrointestinal (GI) inflammation (faecal calprotectin), GI symptoms, and stool habits. We conducted in vitro experiments and used a gut model system to explore potential inhibition of alpha-amylase. We gained qualitative insight into participant experiences of using WKBE via focus groups. WKBE supplementation decreased the relative abundance of Bacteroidetes and increased that of Firmicutes, however, there were no significant differences in post-intervention gut microbiota measurements between the WKBE and control. There were no significant effects on GI inflammation or symptoms related to constipation, or stool consistency or frequency. Our in vitro and gut model system analyses showed no effects of WKBE on alpha-amylase activity. Our findings suggest that WKBE may modulate the gut microbiota in healthy adults, however, the underlying mechanism is unlikely due to active site inhibition of alpha-amylase.
摘要白芸豆提取物(WKBE)是一种经常被提倡作为抗肥胖剂的营养品。这些作用的主要机制是抑制α-淀粉酶,从而减缓碳水化合物的消化和吸收。因此,WKBE可能会影响肠道微生物群并调节肠道健康。在一项随机、安慰剂对照的交叉试验中,我们研究了20名健康成年人补充WKBE 1周对肠道微生物群组成、胃肠道炎症(粪便钙卫蛋白)、胃肠道症状和排便习惯的影响。我们进行了体外实验,并使用肠道模型系统来探索对α-淀粉酶的潜在抑制作用。我们通过焦点小组获得了对参与者使用WKBE体验的定性见解。补充WKBE降低了拟杆菌门的相对丰度,增加了厚壁菌门的相对丰富度,然而,干预后的肠道微生物群测量结果在WKBE和对照组之间没有显著差异。对胃肠道炎症或与便秘有关的症状、粪便稠度或频率没有显著影响。我们的体外和肠道模型系统分析显示WKBE对α-淀粉酶活性没有影响。我们的研究结果表明,WKBE可能调节健康成年人的肠道微生物群,然而,由于α-淀粉酶的活性位点抑制,其潜在机制不太可能。
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引用次数: 1
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Gut microbiome (Cambridge, England)
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