Pub Date : 2024-06-01DOI: 10.1107/S2056989024005887
Christian Näther , Sebastian Mangelsen , W. T. A. Harrison (Editor)
In the crystal structure of the title compound, Ni(NCS)2(C6H7N)2 (C6H7N = 4-methylpyridine), the NiII cations are in an octahedral coordination and are linked by pairs of anionic ligands into corrugated chains in which the cations show alternating all-trans and cis–cis–trans coordination geometries. Upon heating, the title compound transforms into Ni(NCS)2(C6H7N), which is isotypic to its Cd analog as proven by a Rietveld refinement.
The title compound, [Ni(NCS)2(C6H7N)2]n, was prepared by the reaction of Ni(NCS)2 with 4-methylpyridine in water. Its asymmetric unit consists of two crystallographically independent NiII cations, of which one is located on a twofold rotational axis whereas the second occupies a center of inversion, two independent thiocyanate anions and two independent 4-methylpyridine coligands in general positions. Each NiII cation is octahedrally coordinated by two 4-methylpyridine coligands as well as two N- and two S-bonded thiocyanate anions. One of the cations shows an all-trans, the other a cis–cis–trans configuration. The metal centers are linked by pairs of μ-1,3-bridging thiocyanate anions into [101] chains. X-ray powder diffraction shows that a pure crystalline phase has been obtained and thermogravimetry coupled to differential thermoanalysis reveals that the title compound loses half of the 4-methylpyridine coligands and transforms into Ni(NCS)2(C6H7N). Nearly pure samples of this compound can be obtained by thermal annealing and a Rietveld refinement demonstrated that it is isotypic to its recently reported Cd analog [Neumann et al., (2020#). CrystEngComm.22, 184–194] In its crystal structure, the metal cations are linked by one μ-1,3(N,S)- and one μ-1,3,3(N,S,S)-bridging thiocyanate anion into single chains that condense via the μ-1,3,3(N,S,S)-bridging anionic ligands into double chains.
标题化合物[Ni(NCS)2(C6H7N)2] n 是通过 Ni(NCS)2 与 4-甲基吡啶在水中的反应制备的。其不对称单元由两个晶体学上独立的 NiII 阳离子、两个独立的硫代氰酸阴离子和两个一般位置上独立的 4-甲基吡啶共配位体组成,其中一个阳离子位于两倍旋转轴上,而第二个阳离子则占据一个反转中心。每个 NiII 阳离子都由两个 4-甲基吡啶配位体以及两个 N 键和两个 S 键硫氰酸阴离子八面体配位。其中一个阳离子呈全反式构型,另一个呈顺式-顺式-反式构型。金属中心通过成对的μ-1,3桥接硫代氰酸阴离子连接成[101]链。X 射线粉末衍射显示得到了纯净的结晶相,热重分析和差热分析显示,标题化合物失去了一半的 4-甲基吡啶副基,转化为 Ni(NCS)2(C6H7N)。通过热退火可以得到这种化合物的近纯样品,里特维尔德精炼证明它与最近报道的镉类似物[Neumann 等人......]具有同型性、(CrystEngComm. 22, 184-194] 在其晶体结构中,金属阳离子通过一个 μ-1,3,3(N,S)- 和一个 μ-1,3,3(N,S,S)- 桥接的硫氰酸阴离子连接成单链,单链通过 μ-1,3,3(N,S,S)- 桥接的阴离子配体凝结成双链。
{"title":"Synthesis, crystal structure and thermal properties of catena-poly[[bis(4-methylpyridine)nickel(II)]-di-μ-thiocyanato], which shows an alternating all-trans and cis–cis–trans-coordination of the NiS2Np2Nt2 octahedra (p = 4-methylpyridine, t = thiocyanate)","authors":"Christian Näther , Sebastian Mangelsen , W. T. A. Harrison (Editor)","doi":"10.1107/S2056989024005887","DOIUrl":"10.1107/S2056989024005887","url":null,"abstract":"<div><p>In the crystal structure of the title compound, Ni(NCS)<sub>2</sub>(C<sub>6</sub>H<sub>7</sub>N)<sub>2</sub> (C<sub>6</sub>H<sub>7</sub>N = 4-methylpyridine), the Ni<sup>II</sup> cations are in an octahedral coordination and are linked by pairs of anionic ligands into corrugated chains in which the cations show alternating all-<em>trans</em> and <em>cis</em>–<em>cis</em>–<em>trans</em> coordination geometries. Upon heating, the title compound transforms into Ni(NCS)<sub>2</sub>(C<sub>6</sub>H<sub>7</sub>N), which is isotypic to its Cd analog as proven by a Rietveld refinement.</p></div><div><p>The title compound, [Ni(NCS)<sub>2</sub>(C<sub>6</sub>H<sub>7</sub>N)<sub>2</sub>]<sub>n</sub>, was prepared by the reaction of Ni(NCS)<sub>2</sub> with 4-methylpyridine in water. Its asymmetric unit consists of two crystallographically independent Ni<sup>II</sup> cations, of which one is located on a twofold rotational axis whereas the second occupies a center of inversion, two independent thiocyanate anions and two independent 4-methylpyridine coligands in general positions. Each Ni<sup>II</sup> cation is octahedrally coordinated by two 4-methylpyridine coligands as well as two N- and two S-bonded thiocyanate anions. One of the cations shows an all-<em>trans</em>, the other a <em>cis</em>–<em>cis</em>–<em>trans</em> configuration. The metal centers are linked by pairs of μ-1,3-bridging thiocyanate anions into [101] chains. X-ray powder diffraction shows that a pure crystalline phase has been obtained and thermogravimetry coupled to differential thermoanalysis reveals that the title compound loses half of the 4-methylpyridine coligands and transforms into Ni(NCS)<sub>2</sub>(C<sub>6</sub>H<sub>7</sub>N). Nearly pure samples of this compound can be obtained by thermal annealing and a Rietveld refinement demonstrated that it is isotypic to its recently reported Cd analog [Neumann <em>et al.</em>, (2020<span>#</span>). <em>CrystEngComm.</em><strong>22</strong>, 184–194] In its crystal structure, the metal cations are linked by one μ-1,3(<em>N</em>,<em>S</em>)- and one μ-1,3,3(<em>N</em>,<em>S</em>,<em>S</em>)-bridging thiocyanate anion into single chains that condense <em>via</em> the μ-1,3,3(<em>N</em>,<em>S</em>,<em>S</em>)-bridging anionic ligands into double chains.</p></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"80 7","pages":"Pages 771-776"},"PeriodicalIF":0.5,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11223700/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141554025","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-01DOI: 10.1107/S2056989024005565
Gauthier Deblonde , Ian Colliard , Y. Ozawa (Editor)
The cystallization and capture of hexachlorothallium within the phosphotunsgate and caesium chloride matrix is described.
Crystal formation of caesium thallium chloride phosphotungstates, Cs9(TlCl6)(PW12O40)2·9CsCl showcases the ability to capture and crystallize octahedral complexes via the use of polyoxometalates (POMs). The large number of caesium chlorides allows for the POM [α-PW12O40]3− to arrange itself in a cubic close-packing lattice extended framework, in which the voids created enable the capture of the [TlCl6]3− complex.
{"title":"Crystal structure of hexachlorothallate within a caesium chloride–phosphotungstate lattice Cs9(TlCl6)(PW12O40)2·9CsCl","authors":"Gauthier Deblonde , Ian Colliard , Y. Ozawa (Editor)","doi":"10.1107/S2056989024005565","DOIUrl":"10.1107/S2056989024005565","url":null,"abstract":"<div><p>The cystallization and capture of hexachlorothallium within the phosphotunsgate and caesium chloride matrix is described.</p></div><div><p>Crystal formation of caesium thallium chloride phosphotungstates, Cs<sub>9</sub>(TlCl<sub>6</sub>)(PW<sub>12</sub>O<sub>40</sub>)<sub>2</sub>·9CsCl showcases the ability to capture and crystallize octahedral complexes <em>via</em> the use of polyoxometalates (POMs). The large number of caesium chlorides allows for the POM [α-PW<sub>12</sub>O<sub>40</sub>]<sup>3−</sup> to arrange itself in a cubic close-packing lattice extended framework, in which the voids created enable the capture of the [TlCl<sub>6</sub>]<sup>3−</sup> complex.</p></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"80 7","pages":"Pages 721-724"},"PeriodicalIF":0.5,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11223693/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141556463","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-01DOI: 10.1107/S2056989024005619
Oleksandr A. Semenikhin , Sergiu Shova , Irina A. Golenya , Dina D. Naumova , Il’ya A. Gural’skiy , M. Weil (Editor)
This study describes the synthesis, characterization, and Hirshfeld surface analysis of a small organic ammonium bromide salt. The analysis reveals a torsion angle of −64.8 (2)° between the ammonium group and the bromine substituent.
This study presents the synthesis, characterization and Hirshfeld surface analysis of a small organic ammonium salt, C2H7BrN+·Br−. Small cations like the one in the title compound are considered promising components of hybrid perovskites, crucial for optoelectronic and photovoltaic applications. While the incorporation of this organic cation into various hybrid perovskite structures has been explored, its halide salt counterpart remains largely uninvestigated. The obtained structural results are valuable for the synthesis and phase analysis of hybrid perovskites. The title compound crystallizes in the solvent-free form in the centrosymmetric monoclinic space group P21/c, featuring one organic cation and one bromide anion in its asymmetric unit, with a torsion angle of −64.8 (2)° between the ammonium group and the bromine substituent, positioned in a gauche conformation. The crystal packing is predominantly governed by Br⋯H interactions, which constitute 62.6% of the overall close atom contacts.
{"title":"Crystal structure and Hirshfeld surface analysis of 2-bromoethylammonium bromide – a possible side product upon synthesis of hybrid perovskites","authors":"Oleksandr A. Semenikhin , Sergiu Shova , Irina A. Golenya , Dina D. Naumova , Il’ya A. Gural’skiy , M. Weil (Editor)","doi":"10.1107/S2056989024005619","DOIUrl":"10.1107/S2056989024005619","url":null,"abstract":"<div><p>This study describes the synthesis, characterization, and Hirshfeld surface analysis of a small organic ammonium bromide salt. The analysis reveals a torsion angle of −64.8 (2)° between the ammonium group and the bromine substituent.</p></div><div><p>This study presents the synthesis, characterization and Hirshfeld surface analysis of a small organic ammonium salt, C<sub>2</sub>H<sub>7</sub>BrN<sup>+</sup>·Br<sup>−</sup>. Small cations like the one in the title compound are considered promising components of hybrid perovskites, crucial for optoelectronic and photovoltaic applications. While the incorporation of this organic cation into various hybrid perovskite structures has been explored, its halide salt counterpart remains largely uninvestigated. The obtained structural results are valuable for the synthesis and phase analysis of hybrid perovskites. The title compound crystallizes in the solvent-free form in the centrosymmetric monoclinic space group <em>P</em>2<sub>1</sub>/<em>c</em>, featuring one organic cation and one bromide anion in its asymmetric unit, with a torsion angle of −64.8 (2)° between the ammonium group and the bromine substituent, positioned in a <em>gauche</em> conformation. The crystal packing is predominantly governed by Br⋯H interactions, which constitute 62.6% of the overall close atom contacts.</p></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"80 7","pages":"Pages 738-741"},"PeriodicalIF":0.5,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11223709/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141554017","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-01DOI: 10.1107/S2056989024005656
Dinithi Kaluthanthiri , Theshini Perera , Frank R. Fronczek , L. Van Meervelt (Editor)
The title complex possesses pseudo-octahedral geometry where one face of the octahedron is occupied by three carbonyl ligands and the other face is occupied by one sp2 nitrogen atom of the sulfonamide group and two sp3 nitrogen atoms of the dien backbone.
The title compound, [Re(C17H22N3O2S)(CO)3] is a net neutral fac-Re(I)(CO)3 complex of the 4-methylbiphenyl sulfonamide derivatized diethylenetriamine ligand. The NNN-donor monoanionic ligand coordinates with the Re core in tridentate fashion, establishing an inner coordination sphere resulting in a net neutral complex. The complex possesses pseudo-octahedral geometry where one face of the octahedron is occupied by three carbonyl ligands and the other faces are occupied by one sp2 nitrogen atom of the sulfonamide group and two sp3 nitrogen atoms of the dien backbone. The Re—Nsp2 bond distance, 2.173 (4) Å, is shorter than the Re—Nsp3 bond distances, 2.217 (5) and 2.228 (6) Å, and is similar to the range reported for typical Re—Nsp2 bond lengths (2.14 to 2.18 Å).
{"title":"Synthesis, spectroscopic analysis and crystal structure of (N-{2-[(2-aminoethyl)amino]ethyl}-4′-methyl-[1,1′-biphenyl]-4-sulfonamidato)tricarbonylrhenium(I)","authors":"Dinithi Kaluthanthiri , Theshini Perera , Frank R. Fronczek , L. Van Meervelt (Editor)","doi":"10.1107/S2056989024005656","DOIUrl":"10.1107/S2056989024005656","url":null,"abstract":"<div><p>The title complex possesses pseudo-octahedral geometry where one face of the octahedron is occupied by three carbonyl ligands and the other face is occupied by one <em>sp</em><sup>2</sup> nitrogen atom of the sulfonamide group and two <em>sp</em><sup>3</sup> nitrogen atoms of the dien backbone.</p></div><div><p>The title compound, [Re(C<sub>17</sub>H<sub>22</sub>N<sub>3</sub>O<sub>2</sub>S)(CO)<sub>3</sub>] is a net neutral <em>fac</em>-Re(I)(CO)<sub>3</sub> complex of the 4-methylbiphenyl sulfonamide derivatized diethylenetriamine ligand. The NNN-donor monoanionic ligand coordinates with the Re core in tridentate fashion, establishing an inner coordination sphere resulting in a net neutral complex. The complex possesses pseudo-octahedral geometry where one face of the octahedron is occupied by three carbonyl ligands and the other faces are occupied by one <em>sp</em><sup>2</sup> nitrogen atom of the sulfonamide group and two <em>sp</em><sup>3</sup> nitrogen atoms of the dien backbone. The Re—N<em>sp</em><sup>2</sup> bond distance, 2.173 (4) Å, is shorter than the Re—N<em>sp</em><sup>3</sup> bond distances, 2.217 (5) and 2.228 (6) Å, and is similar to the range reported for typical Re—N<em>sp</em><sup>2</sup> bond lengths (2.14 to 2.18 Å).</p></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"80 7","pages":"Pages 742-745"},"PeriodicalIF":0.5,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11223712/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141556466","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-01DOI: 10.1107/S2056989024005826
Anastasia A. Pronina , Alexandra G. Podrezova , Mikhail S. Grigoriev , Khudayar I. Hasanov , Nurlana D. Sadikhova , Mehmet Akkurt , Ajaya Bhattarai , J. Ellena (Editor)
In the crystal, molecules are linked by intermolecular N—H⋯O, C—H⋯O, C—H⋯F and C—H⋯Br hydrogen bonds, forming a three-dimensional network. In addition, C—H⋯π interactions connect molecules into ribbons along the b-axis direction, consolidating the molecular packing.
In the title compound, C19H18BrFN2O, the pyrrolidine ring adopts an envelope conformation. In the crystal, molecules are linked by intermolecular N—H⋯O, C—H⋯O, C—H⋯F and C—H⋯Br hydrogen bonds, forming a three-dimensional network. In addition, C—H⋯π interactions connect molecules into ribbons along the b-axis direction, consolidating the molecular packing. The intermolecular interactions in the crystal structure were quantified and analysed using Hirshfeld surface analysis.
{"title":"Crystal structure and Hirshfeld surface analysis of 1-[6-bromo-2-(4-fluorophenyl)-1,2,3,4-tetrahydroquinolin-4-yl]pyrrolidin-2-one","authors":"Anastasia A. Pronina , Alexandra G. Podrezova , Mikhail S. Grigoriev , Khudayar I. Hasanov , Nurlana D. Sadikhova , Mehmet Akkurt , Ajaya Bhattarai , J. Ellena (Editor)","doi":"10.1107/S2056989024005826","DOIUrl":"10.1107/S2056989024005826","url":null,"abstract":"<div><p>In the crystal, molecules are linked by intermolecular N—H⋯O, C—H⋯O, C—H⋯F and C—H⋯Br hydrogen bonds, forming a three-dimensional network. In addition, C—H⋯π interactions connect molecules into ribbons along the <em>b</em>-axis direction, consolidating the molecular packing.</p></div><div><p>In the title compound, C<sub>19</sub>H<sub>18</sub>BrFN<sub>2</sub>O, the pyrrolidine ring adopts an envelope conformation. In the crystal, molecules are linked by intermolecular N—H⋯O, C—H⋯O, C—H⋯F and C—H⋯Br hydrogen bonds, forming a three-dimensional network. In addition, C—H⋯π interactions connect molecules into ribbons along the <em>b</em>-axis direction, consolidating the molecular packing. The intermolecular interactions in the crystal structure were quantified and analysed using Hirshfeld surface analysis.</p></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"80 7","pages":"Pages 777-782"},"PeriodicalIF":0.5,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11223703/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141554016","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-01DOI: 10.1107/S2056989024005528
Kholida Jabborova , Jamshid Ashurov , Akmaljon Tojiboev , Shahlo Daminova , M. Weil (Editor)
The title compound contains infinite linear zigzag vanadate (V2O6)2−chains, constructed from corner-sharing VO4 tetrahedra, running parallel to the a axis.
The structure of polymeric catena-poly[2-aminobenzimidazolium [[dioxidovanadium(V)]-μ-oxido]], {(C7H8N3)2[V2O6]}n, has monoclinic symmetry. The title compound is of interest with respect to anticancer activity. In the crystal structure, infinite linear zigzag vanadate (V2O6)2− chains, constructed from corner-sharing VO4 tetrahedra and that run parallel to the a axis, are present. Two different protonated 2-aminobenzimidazole molecules are located between the (V2O6)2– chains and form classical N—H⋯O hydrogen bonds with the vanadate oxygen atoms, which contribute to the cohesion of the structure.
聚合 catena-poly[2-amino-benzimidazolium [[dioxidovanadium(V)]-μ-oxido]], {(C7H8N3)2[V2O6]} n 的结构具有单斜对称性。标题化合物具有极高的抗癌活性。在晶体结构中,钒酸盐 (V2O6)2- 链是由角共享的 VO4 四面体构建而成,平行于 a 轴。两个不同的质子化 2-氨基苯并咪唑分子位于 (V2O6)2- 链之间,并与钒酸盐氧原子形成经典的 N-H⋯O 氢键,从而增强了结构的内聚力。
{"title":"Synthesis and crystal structure of bis(2-aminobenzimidazolium) catena-[metavanadate(V)]","authors":"Kholida Jabborova , Jamshid Ashurov , Akmaljon Tojiboev , Shahlo Daminova , M. Weil (Editor)","doi":"10.1107/S2056989024005528","DOIUrl":"10.1107/S2056989024005528","url":null,"abstract":"<div><p>The title compound contains infinite linear zigzag vanadate (V<sub>2</sub>O<sub>6</sub>)<sup>2−</sup>chains, constructed from corner-sharing VO<sub>4</sub> tetrahedra, running parallel to the <em>a</em> axis.</p></div><div><p>The structure of polymeric <em>catena</em>-poly[2-aminobenzimidazolium [[dioxidovanadium(V)]-μ-oxido]], {(C<sub>7</sub>H<sub>8</sub>N<sub>3</sub>)<sub>2</sub>[V<sub>2</sub>O<sub>6</sub>]}<sub>n</sub>, has monoclinic symmetry. The title compound is of interest with respect to anticancer activity. In the crystal structure, infinite linear zigzag vanadate (V<sub>2</sub>O<sub>6</sub>)<sup>2−</sup> chains, constructed from corner-sharing VO<sub>4</sub> tetrahedra and that run parallel to the <em>a</em> axis, are present. Two different protonated 2-aminobenzimidazole molecules are located between the (V<sub>2</sub>O<sub>6</sub>)<sup>2–</sup> chains and form classical N—H⋯O hydrogen bonds with the vanadate oxygen atoms, which contribute to the cohesion of the structure.</p></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"80 7","pages":"Pages 751-754"},"PeriodicalIF":0.5,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11223690/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141554024","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-01DOI: 10.1107/S2056989024005760
George V. Fedorenko , Oleksandr I. Zbruyev , Anna V. Pavlishchuk , Lyudmila P. Oleksenko , Sergiu G. Shova , Valentyn A. Chebanov , Vitaly V. Pavlishchuk , J. Ellena (Editor)
A reaction between cucurbit[6]uril (CB6) with an excess of Pr(NO3)3·6H2O lead to the isolation of new mononuclear complex [Pr(CB6)(NO3)(H2O)5](NO3)2·9.56H2O (1), which crystallizes in the P21/n space group. The asymmetric unit of 1 contains two crystallographically independent [Pr(CB6)(NO3)(H2O)5]2+ complex cations, four nitrate counter-anions for charge balance and 19.12 interstitial water molecules. The coordination environments of the PrIII ions in 1 are formed by two carbonyl O atoms from bidentate cucurbit[6]uril units, two oxygen atoms from the bidentate nitrate anion and five water molecules.
A new mononuclear complex, pentaaqua(cucurbit[6]uril-κ2O,O′)(nitrato-κ2O,O′)praseodymium(III) dinitrate 9.56-hydrate, [Pr(NO3)(CB6)(H2O)5](NO3)2·9.56H2O (1), was obtained as outcome of the hydrothermal reaction between the macrocyclic ligand cucurbit[6]uril (CB6, C36H36N24O12) with a tenfold excess of Pr(NO3)3·6H2O. Complex 1 crystallizes in the P21/n space group with two crystallographically independent but chemically identical [Pr(CB6)(NO3)(H2O)5]2+ complex cations, four nitrate counter-anions and 19.12 interstitial water molecules per asymmetric unit. The nonacoordinated PrIII in 1 are located in the PrO9 coordination environment formed by two carbonyl O atoms from bidentate cucurbit[6]uril units, two oxygen atoms from the bidentate nitrate anion and five water molecules. Considering the differences in Pr—O bond distances and O—Pr—O angles in the coordination spheres, the coordination polyhedrons of the two PrIII atoms can be described as distorted spherical capped square antiprismatic and muffin polyhedral.
{"title":"The crystal structure of a mononuclear PrIII complex with cucurbit[6]uril","authors":"George V. Fedorenko , Oleksandr I. Zbruyev , Anna V. Pavlishchuk , Lyudmila P. Oleksenko , Sergiu G. Shova , Valentyn A. Chebanov , Vitaly V. Pavlishchuk , J. Ellena (Editor)","doi":"10.1107/S2056989024005760","DOIUrl":"10.1107/S2056989024005760","url":null,"abstract":"<div><p>A reaction between cucurbit[6]uril (<strong>CB6</strong>) with an excess of Pr(NO<sub>3</sub>)<sub>3</sub>·6H<sub>2</sub>O lead to the isolation of new mononuclear complex [Pr(CB6)(NO<sub>3</sub>)(H<sub>2</sub>O)<sub>5</sub>](NO<sub>3</sub>)<sub>2</sub>·9.56H<sub>2</sub>O (<strong>1</strong>), which crystallizes in the <em>P</em>2<sub>1</sub>/<em>n</em> space group. The asymmetric unit of <strong>1</strong> contains two crystallographically independent [Pr(CB6)(NO<sub>3</sub>)(H<sub>2</sub>O)<sub>5</sub>]<sup>2+</sup> complex cations, four nitrate counter-anions for charge balance and 19.12 interstitial water molecules. The coordination environments of the Pr<sup>III</sup> ions in <strong>1</strong> are formed by two carbonyl O atoms from bidentate cucurbit[6]uril units, two oxygen atoms from the bidentate nitrate anion and five water molecules.</p></div><div><p>A new mononuclear complex, pentaaqua(cucurbit[6]uril-κ<sup>2</sup><em>O</em>,<em>O</em>′)(nitrato-κ<sup>2</sup><em>O</em>,<em>O</em>′)praseodymium(III) dinitrate 9.56-hydrate, [Pr(NO<sub>3</sub>)(CB6)(H<sub>2</sub>O)<sub>5</sub>](NO<sub>3</sub>)<sub>2</sub>·9.56H<sub>2</sub>O (<strong>1</strong>), was obtained as outcome of the hydrothermal reaction between the macrocyclic ligand cucurbit[6]uril (<strong>CB6</strong>, C<sub>36</sub>H<sub>36</sub>N<sub>24</sub>O<sub>12</sub>) with a tenfold excess of Pr(NO<sub>3</sub>)<sub>3</sub>·6H<sub>2</sub>O. Complex <strong>1</strong> crystallizes in the <em>P</em>2<sub>1</sub>/<em>n</em> space group with two crystallographically independent but chemically identical [Pr(CB6)(NO<sub>3</sub>)(H<sub>2</sub>O)<sub>5</sub>]<sup>2+</sup> complex cations, four nitrate counter-anions and 19.12 interstitial water molecules per asymmetric unit. The nonacoordinated Pr<sup>III</sup> in <strong>1</strong> are located in the PrO<sub>9</sub> coordination environment formed by two carbonyl O atoms from bidentate cucurbit[6]uril units, two oxygen atoms from the bidentate nitrate anion and five water molecules. Considering the differences in Pr—O bond distances and O—Pr—O angles in the coordination spheres, the coordination polyhedrons of the two Pr<sup>III</sup> atoms can be described as distorted spherical capped square antiprismatic and muffin polyhedral.</p></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"80 7","pages":"Pages 789-794"},"PeriodicalIF":0.5,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11223695/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141554027","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-01DOI: 10.1107/S2056989024006042
Hai Le Thi Hong , Duong Hoang Tuan , Anh Nguyen Duc , Hien Nguyen , Luc Van Meervelt , M. Weil (Editor)
The two MnII atoms in the complex display a different coordination number, viz. five with a distorted trigonal–bipyramidal Cl3N2 and six with a distorted octahedral Cl3N2O coordination set.
A new quinoline derivative, namely, 6-(diethylamino)-4-phenyl-2-(pyridin-2-yl)quinoline, C24H23N3 (QP), and its MnII complex aqua-1κO-di-μ-chlorido-1:2κ4Cl:Cl-dichlorido-1κCl,2κCl-bis[6-(diethylamino)-4-phenyl-2-(pyridin-2-yl)quinoline]-1κ2N1,N2;2κ2N1,N2-dimanganese(II), [Mn2Cl4(C24H23N3)2(H2O)] (MnQP), were synthesized. Their compositions have been determined with ESI-MS, IR, and 1H NMR spectroscopy. The crystal-structure determination of MnQP revealed a dinuclear complex with a central four-membered Mn2Cl2 ring. Both MnII atoms bind to an additional Cl atom and to two N atoms of the QP ligand. One MnII atom expands its coordination sphere with an extra water molecule, resulting in a distorted octahedral shape. The second MnII atom shows a distorted trigonal–bipyramidal shape. The UV–vis absorption and emission spectra of the examined compounds were studied. Furthermore, when investigating the aggregation-induced emission (AIE) properties, it was found that the fluorescent color changes from blue to green and eventually becomes yellow as the fraction of water in the THF/water mixture increases from 0% to 99%. In particular, these color and intensity changes are most pronounced at a water fraction of 60%. The crystal structure contains disordered solvent molecules, which could not be modeled. The SQUEEZE procedure [Spek (2015#). Acta Cryst. C71, 9–18] was used to obtain information on the type and quantity of solvent molecules, which resulted in 44 electrons in a void volume of 274 Å3, corresponding to approximately 1.7 molecules of ethanol in the unit cell. These ethanol molecules are not considered in the given chemical formula and other crystal data.
{"title":"Synthesis, crystal structure and photophysical properties of a dinuclear MnII complex with 6-(diethylamino)-4-phenyl-2-(pyridin-2-yl)quinoline","authors":"Hai Le Thi Hong , Duong Hoang Tuan , Anh Nguyen Duc , Hien Nguyen , Luc Van Meervelt , M. Weil (Editor)","doi":"10.1107/S2056989024006042","DOIUrl":"10.1107/S2056989024006042","url":null,"abstract":"<div><p>The two Mn<sup>II</sup> atoms in the complex display a different coordination number, <em>viz</em>. five with a distorted trigonal–bipyramidal Cl<sub>3</sub>N<sub>2</sub> and six with a distorted octahedral Cl<sub>3</sub>N<sub>2</sub>O coordination set.</p></div><div><p>A new quinoline derivative, namely, 6-(diethylamino)-4-phenyl-2-(pyridin-2-yl)quinoline, C<sub>24</sub>H<sub>23</sub>N<sub>3</sub> (<strong>QP</strong>), and its Mn<sup>II</sup> complex aqua-1κ<em>O</em>-di-μ-chlorido-1:2κ<sup>4</sup><em>Cl</em>:<em>Cl</em>-dichlorido-1κ<em>Cl</em>,2κ<em>Cl</em>-bis[6-(diethylamino)-4-phenyl-2-(pyridin-2-yl)quinoline]-1κ<sup>2</sup><em>N</em><sup>1</sup>,<em>N</em><sup>2</sup>;2κ<sup>2</sup><em>N</em><sup>1</sup>,<em>N</em><sup>2</sup>-dimanganese(II), [Mn<sub>2</sub>Cl<sub>4</sub>(C<sub>24</sub>H<sub>23</sub>N<sub>3</sub>)<sub>2</sub>(H<sub>2</sub>O)] (<strong>MnQP</strong>), were synthesized. Their compositions have been determined with ESI-MS, IR, and <sup>1</sup>H NMR spectroscopy. The crystal-structure determination of <strong>MnQP</strong> revealed a dinuclear complex with a central four-membered Mn<sub>2</sub>Cl<sub>2</sub> ring. Both Mn<sup>II</sup> atoms bind to an additional Cl atom and to two N atoms of the <strong>QP</strong> ligand. One Mn<sup>II</sup> atom expands its coordination sphere with an extra water molecule, resulting in a distorted octahedral shape. The second Mn<sup>II</sup> atom shows a distorted trigonal–bipyramidal shape. The UV–vis absorption and emission spectra of the examined compounds were studied. Furthermore, when investigating the aggregation-induced emission (AIE) properties, it was found that the fluorescent color changes from blue to green and eventually becomes yellow as the fraction of water in the THF/water mixture increases from 0% to 99%. In particular, these color and intensity changes are most pronounced at a water fraction of 60%. The crystal structure contains disordered solvent molecules, which could not be modeled. The SQUEEZE procedure [Spek (2015<span>#</span>). <em>Acta Cryst.</em> C<strong>71</strong>, 9–18] was used to obtain information on the type and quantity of solvent molecules, which resulted in 44 electrons in a void volume of 274 Å<sup>3</sup>, corresponding to approximately 1.7 molecules of ethanol in the unit cell. These ethanol molecules are not considered in the given chemical formula and other crystal data.</p></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"80 7","pages":"Pages 795-799"},"PeriodicalIF":0.5,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11223701/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141556465","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-01DOI: 10.1107/S2056989024005504
Sainath Babu , Frank R. Fronczek , Rao M. Uppu , Michelle O. Claville , W. T. A. Harrison (Editor)
The zwitterionic, isomeric, title compounds, Gly-Met and Met-Gly are methionine-containing dipeptides, which show very different conformations in the solid state.
The oxidation of methionyl peptides can contribute to increased biological (oxidative) stress and development of various inflammatory diseases. The conformation of peptides has an important role in the mechanism of oxidation and the intermediates formed in the reaction. Herein, the crystal structures of the isomeric dipeptides Gly-Met (Gly = glycine and Met = methionine) and Met-Gly, both C7H14N2O3S, are reported. Both molecules exist in the solid state as zwitterions with nominal proton transfer from the carboxylic acid to the primary amine group. The Gly-Met molecule has an extended backbone structure, while Met-Gly has two nearly planar regions kinked at the C atom bearing the NH3 group. In the crystals, both structures form extensive three-dimensional hydrogen-bonding networks via N—H⋯O and bifurcated N—H⋯(O,O) hydrogen bonds having N⋯O distances in the range 2.6619 (13)–2.8513 (13) Å for Gly-Met and 2.6273 (8)–3.1465 (8) Å for Met-Gly.
{"title":"Crystal structures of the isomeric dipeptides l-glycyl-l-methionine and l-methionyl-l-glycine","authors":"Sainath Babu , Frank R. Fronczek , Rao M. Uppu , Michelle O. Claville , W. T. A. Harrison (Editor)","doi":"10.1107/S2056989024005504","DOIUrl":"10.1107/S2056989024005504","url":null,"abstract":"<div><p>The zwitterionic, isomeric, title compounds, Gly-Met and Met-Gly are methionine-containing dipeptides, which show very different conformations in the solid state.</p></div><div><p>The oxidation of methionyl peptides can contribute to increased biological (oxidative) stress and development of various inflammatory diseases. The conformation of peptides has an important role in the mechanism of oxidation and the intermediates formed in the reaction. Herein, the crystal structures of the isomeric dipeptides Gly-Met (Gly = glycine and Met = methionine) and Met-Gly, both C<sub>7</sub>H<sub>14</sub>N<sub>2</sub>O<sub>3</sub>S, are reported. Both molecules exist in the solid state as zwitterions with nominal proton transfer from the carboxylic acid to the primary amine group. The Gly-Met molecule has an extended backbone structure, while Met-Gly has two nearly planar regions kinked at the C atom bearing the NH<sub>3</sub> group. In the crystals, both structures form extensive three-dimensional hydrogen-bonding networks <em>via</em> N—H⋯O and bifurcated N—H⋯(O,O) hydrogen bonds having N⋯O distances in the range 2.6619 (13)–2.8513 (13) Å for Gly-Met and 2.6273 (8)–3.1465 (8) Å for Met-Gly.</p></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"80 7","pages":"Pages 725-728"},"PeriodicalIF":0.5,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141340750","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-01DOI: 10.1107/S2056989024005449
Lee Roecker , Sean Parkin , X. Hao (Editor)
The synthesis, crystal structure and a Hirshfeld surface analysis of tris{N,N-diethyl-N′-[(4-nitrophenyl)(oxo)methyl]carbamimidothioato}cobalt(III) are described.
The synthesis, crystal structure, and a Hirshfeld surface analysis of tris{N,N-diethyl-N′-[(4-nitrophenyl)(oxo)methyl]carbamimidothioato}cobalt(III) conducted at 180 K are presented. The complex consists of three N,N-diethyl-N′-[(4-nitrobenzene)(oxo)methyl]carbamimidothioato ligands, threefold symmetrically bonded about the CoIII ion, in approximately octahedral coordination, which generates a triple of individually near planar metallacyclic (Co—S—C—N—C—O) rings. The overall geometry of the complex is determined by the mutual orientation of each metallacycle about the crystallographically imposed threefold axis [dihedral angles = 81.70 (2)°] and by the dihedral angles between the various planar groups within each asymmetric unit [metallacycle to benzene ring = 13.83 (7)°; benzene ring to nitro group = 17.494 (8)°]. The complexes stack in anti-parallel columns about the axis of the space group (P), generating solvent-accessible channels along [001]. These channels contain ill-defined, multiply disordered, partial-occupancy solvent. Atom–atom contacts in the crystal packing predominantly (∼96%) involve hydrogen, the most abundant types being H⋯H (36.6%), H⋯O (31.0%), H⋯C (19.2%), H⋯N (4.8%), and H⋯S (4.4%).
{"title":"Crystal structure of tris{N,N-diethyl-N′-[(4-nitrophenyl)(oxo)methyl]carbamimidothioato}cobalt(III)","authors":"Lee Roecker , Sean Parkin , X. Hao (Editor)","doi":"10.1107/S2056989024005449","DOIUrl":"10.1107/S2056989024005449","url":null,"abstract":"<div><p>The synthesis, crystal structure and a Hirshfeld surface analysis of tris{<em>N</em>,<em>N</em>-diethyl-<em>N</em>′-[(4-nitrophenyl)(oxo)methyl]carbamimidothioato}cobalt(III) are described.</p></div><div><p>The synthesis, crystal structure, and a Hirshfeld surface analysis of tris{<em>N</em>,<em>N</em>-diethyl-<em>N</em>′-[(4-nitrophenyl)(oxo)methyl]carbamimidothioato}cobalt(III) conducted at 180 K are presented. The complex consists of three <em>N</em>,<em>N</em>-diethyl-<em>N</em>′-[(4-nitrobenzene)(oxo)methyl]carbamimidothioato ligands, threefold symmetrically bonded about the Co<sup>III</sup> ion, in approximately octahedral coordination, which generates a triple of individually near planar metallacyclic (Co—S—C—N—C—O) rings. The overall geometry of the complex is determined by the mutual orientation of each metallacycle about the crystallographically imposed threefold axis [dihedral angles = 81.70 (2)°] and by the dihedral angles between the various planar groups within each asymmetric unit [metallacycle to benzene ring = 13.83 (7)°; benzene ring to nitro group = 17.494 (8)°]. The complexes stack in anti-parallel columns about the <figure><img></figure> axis of the space group (<em>P</em><figure><img></figure>), generating solvent-accessible channels along [001]. These channels contain ill-defined, multiply disordered, partial-occupancy solvent. Atom–atom contacts in the crystal packing predominantly (∼96%) involve hydrogen, the most abundant types being H⋯H (36.6%), H⋯O (31.0%), H⋯C (19.2%), H⋯N (4.8%), and H⋯S (4.4%).</p></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"80 7","pages":"Pages 713-716"},"PeriodicalIF":0.5,"publicationDate":"2024-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141338293","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}