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Deconstructing the glass transition through critical experiments on colloids 通过对胶体的关键实验解构玻璃化转变
1区 物理与天体物理 Q1 PHYSICS, CONDENSED MATTER Pub Date : 2016-07-03 DOI: 10.1080/00018732.2016.1200832
Shreyas Gokhale, A. Sood, R. Ganapathy
The glass transition is the most enduring grand-challenge problem in contemporary condensed matter physics. Here, we review the contribution of colloid experiments to our understanding of this problem. First, we briefly outline the success of colloidal systems in yielding microscopic insights into a wide range of condensed matter phenomena. In the context of the glass transition, we demonstrate their utility in revealing the nature of spatial and temporal dynamical heterogeneity. We then discuss the evidence from colloid experiments in favor of various theories of glass formation that has accumulated over the last two decades. In the next section, we expound on the recent paradigm shift in colloid experiments from an exploratory approach to a critical one aimed at distinguishing between predictions of competing frameworks. We demonstrate how this critical approach is aided by the discovery of novel dynamical crossovers within the range accessible to colloid experiments. We also highlight the impact of alternate routes to glass formation such as random pinning, trajectory space phase transitions and replica coupling on current and future research on the glass transition. We conclude our review by listing some key open challenges in glass physics such as the comparison of growing static length scales and the preparation of ultrastable glasses that can be addressed using colloid experiments.
玻璃化转变是当代凝聚态物理学中最具挑战性的问题。在这里,我们回顾了胶体实验对我们理解这个问题的贡献。首先,我们简要概述了胶体系统在广泛的凝聚态现象中产生微观见解的成功。在玻璃化转变的背景下,我们展示了它们在揭示空间和时间动态异质性本质方面的效用。然后,我们讨论了胶体实验的证据,支持过去二十年来积累的各种玻璃形成理论。在下一节中,我们将阐述胶体实验中最近的范式转变,从探索性方法转变为旨在区分竞争框架预测的关键方法。我们展示了这种关键方法是如何通过在胶体实验范围内发现新的动态交叉来帮助的。我们还强调了随机钉钉、轨迹空间相变和副本耦合等替代途径对玻璃转变的影响,以及当前和未来的研究。最后,我们列出了玻璃物理学中一些关键的开放挑战,如生长静态长度尺度的比较和超稳定玻璃的制备,这些可以通过胶体实验来解决。
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引用次数: 39
Ultrafast optical spectroscopy of strongly correlated materials and high-temperature superconductors: a non-equilibrium approach 强相关材料和高温超导体的超快光谱学:一种非平衡方法
1区 物理与天体物理 Q1 PHYSICS, CONDENSED MATTER Pub Date : 2016-01-26 DOI: 10.1080/00018732.2016.1194044
C. Giannetti, M. Capone, D. Fausti, M. Fabrizio, F. Parmigiani, D. Mihailovic
In the last two decades non-equilibrium spectroscopies have evolved from avant-garde studies to crucial tools for expanding our understanding of the physics of strongly correlated materials. The possibility of obtaining simultaneously spectroscopic and temporal information has led to insights that are complementary to (and in several cases beyond) those attainable by studying the matter at equilibrium. From this perspective, multiple phase transitions and new orders arising from competing interactions are benchmark examples where the interplay among electrons, lattice and spin dynamics can be disentangled because of the different timescales that characterize the recovery of the initial ground state. For example, the nature of the broken-symmetry phases and of the bosonic excitations that mediate the electronic interactions, eventually leading to superconductivity or other exotic states, can be revealed by observing the sub-picosecond dynamics of impulsively excited states. Furthermore, recent experimental and theoretical developments have made it possible to monitor the time-evolution of both the single-particle and collective excitations under extreme conditions, such as those arising from strong and selective photo-stimulation. These developments are opening the way for new, non-equilibrium phenomena that can eventually be induced and manipulated by short laser pulses. Here, we review the most recent achievements in the experimental and theoretical studies of the non-equilibrium electronic, optical, structural and magnetic properties of correlated materials. The focus will be mainly on the prototypical case of correlated oxides that exhibit unconventional superconductivity or other exotic phases. The discussion will also extend to other topical systems, such as iron-based and organic superconductors, and charge-transfer insulators. With this review, the dramatically growing demand for novel experimental tools and theoretical methods, models and concepts, will clearly emerge. In particular, the necessity of extending the actual experimental capabilities and the numerical and analytic tools to microscopically treat the non-equilibrium phenomena beyond the simple phenomenological approaches represents one of the most challenging new frontiers in physics.
在过去的二十年里,非平衡光谱已经从前卫的研究发展成为扩展我们对强相关材料物理学理解的关键工具。同时获得光谱和时间信息的可能性已经导致了对平衡态物质研究所能获得的见解的补充(在某些情况下甚至超越了这些见解)。从这个角度来看,多重相变和竞争相互作用产生的新秩序是基准例子,其中电子,晶格和自旋动力学之间的相互作用可以被解开,因为不同的时间尺度表征了初始基态的恢复。例如,通过观察脉冲激发态的亚皮秒动力学,可以揭示破坏对称相和介导电子相互作用,最终导致超导或其他奇异状态的玻色子激发的性质。此外,最近的实验和理论发展使得在极端条件下监测单粒子和集体激发的时间演化成为可能,例如那些由强和选择性光刺激引起的条件。这些发展为新的非平衡现象开辟了道路,这些现象最终可以由短激光脉冲诱导和操纵。本文综述了相关材料的非平衡电子、光学、结构和磁性等方面的最新实验和理论研究成果。重点将主要放在相关氧化物的原型上,这些氧化物表现出非常规的超导性或其他奇特的相。讨论还将扩展到其他专题系统,如铁基和有机超导体,以及电荷转移绝缘体。随着这一综述,对新的实验工具和理论方法、模型和概念的需求急剧增长,将清楚地出现。特别是,扩展实际实验能力和数值和分析工具的必要性,超越简单的现象学方法,从微观上处理非平衡现象,这是物理学中最具挑战性的新领域之一。
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引用次数: 314
Optical methods for quantitative and label-free sensing in living human tissues: principles, techniques, and applications. 活体人体组织中定量和无标记传感的光学方法:原理、技术和应用。
1区 物理与天体物理 Q1 PHYSICS, CONDENSED MATTER Pub Date : 2016-01-01 Epub Date: 2016-09-01 DOI: 10.1080/23746149.2016.1221739
Robert H Wilson, Karthik Vishwanath, Mary-Ann Mycek

We present an overview of quantitative and label-free optical methods used to characterize living biological tissues, with an emphasis on emerging applications in clinical tissue diagnostics. Specifically, this review focuses on diffuse optical spectroscopy, imaging, and tomography, optical coherence-based techniques, and non-linear optical methods for molecular imaging. The potential for non- or minimally-invasive assessment, quantitative diagnostics, and continuous monitoring enabled by these tissue-optics technologies provides significant promise for continued clinical translation.

我们提出了定量和无标签光学方法的概述,用于表征活的生物组织,在临床组织诊断新兴应用的重点。具体来说,这篇综述集中在漫射光谱学、成像和断层扫描、基于光学相干的技术和分子成像的非线性光学方法。这些组织光学技术具有无创或微创评估、定量诊断和连续监测的潜力,为持续的临床转化提供了重要的希望。
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引用次数: 0
Statistical physics of inference: thresholds and algorithms 统计物理推理:阈值和算法
1区 物理与天体物理 Q1 PHYSICS, CONDENSED MATTER Pub Date : 2015-11-08 DOI: 10.1080/00018732.2016.1211393
L. Zdeborová, F. Krzakala
Many questions of fundamental interest in today's science can be formulated as inference problems: some partial, or noisy, observations are performed over a set of variables and the goal is to recover, or infer, the values of the variables based on the indirect information contained in the measurements. For such problems, the central scientific questions are: Under what conditions is the information contained in the measurements sufficient for a satisfactory inference to be possible? What are the most efficient algorithms for this task? A growing body of work has shown that often we can understand and locate these fundamental barriers by thinking of them as phase transitions in the sense of statistical physics. Moreover, it turned out that we can use the gained physical insight to develop new promising algorithms. The connection between inference and statistical physics is currently witnessing an impressive renaissance and we review here the current state-of-the-art, with a pedagogical focus on the Ising model which, formulated as an inference problem, we call the planted spin glass. In terms of applications we review two classes of problems: (i) inference of clusters on graphs and networks, with community detection as a special case and (ii) estimating a signal from its noisy linear measurements, with compressed sensing as a case of sparse estimation. Our goal is to provide a pedagogical review for researchers in physics and other fields interested in this fascinating topic.
当今科学中的许多基本问题都可以表述为推理问题:对一组变量进行部分或有噪声的观察,目标是根据测量中包含的间接信息恢复或推断变量的值。对于这些问题,核心的科学问题是:在什么条件下,测量中包含的信息足以使一个令人满意的推断成为可能?对于这个任务,最有效的算法是什么?越来越多的工作表明,我们通常可以通过将它们视为统计物理学意义上的相变来理解和定位这些基本障碍。此外,事实证明,我们可以利用获得的物理洞察力来开发新的有前途的算法。推理和统计物理学之间的联系目前正在经历一个令人印象深刻的复兴,我们在这里回顾当前的最新技术,教学重点是伊辛模型,它被表述为一个推理问题,我们称之为种植自旋玻璃。在应用方面,我们回顾了两类问题:(i)在图和网络上的聚类推断,社区检测是一种特殊情况;(ii)从噪声线性测量中估计信号,压缩感知是稀疏估计的一种情况。我们的目标是为物理学和其他领域对这个迷人话题感兴趣的研究人员提供一个教学回顾。
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引用次数: 335
Multiferroic materials and magnetoelectric physics: symmetry, entanglement, excitation, and topology 多铁性材料与磁电物理:对称、纠缠、激发与拓扑
1区 物理与天体物理 Q1 PHYSICS, CONDENSED MATTER Pub Date : 2015-11-02 DOI: 10.1080/00018732.2015.1114338
S. Dong, Jun-ming Liu, S. Cheong, Z. Ren
Multiferroics are those materials with more than one ferroic order, and magnetoelectricity refers to the mutual coupling between magnetism (spins and/or magnetic field) and electricity (electric dipoles and/or electric field). In spite of the long research history in the whole twentieth century, the discipline of multiferroicity has never been so highly active as that in the first decade of the twenty-first century, and it has become one of the hottest disciplines of condensed matter physics and materials science. A series of milestones and steady progress in the past decade have enabled our understanding of multiferroic physics substantially comprehensive and profound, which is further pushing forward the research frontier of this exciting area. The availability of more multiferroic materials and improved magnetoelectric performance are approaching to make the applications within reach. While seminal review articles covering the major progress before 2010 are available, an updated review addressing the new achievements since that time becomes imperative. In this review, following a concise outline of the basic knowledge of multiferroicity and magnetoelectricity, we summarize the important research activities on multiferroics, especially magnetoelectricity and related physics in the last six years. We consider not only single-phase multiferroics but also multiferroic heterostructures. We address the physical mechanisms regarding magnetoelectric coupling so that the backbone of this divergent discipline can be highlighted. A series of issues on lattice symmetry, magnetic ordering, ferroelectricity generation, electromagnon excitations, multiferroic domain structure and domain wall dynamics, and interfacial coupling in multiferroic heterostructures, will be revisited in an updated framework of physics. In addition, several emergent phenomena and related physics, including magnetic skyrmions and generic topological structures associated with magnetoelectricity will be discussed. The review is ended with a set of prospectives and forward-looking conclusions, which may inevitably reflect the authors' biased opinions but are certainly critical.
多铁性材料是指具有一个以上铁序的材料,磁电是指磁(自旋和/或磁场)和电(电偶极子和/或电场)之间的相互耦合。在整个二十世纪,多铁性学科有着悠久的研究历史,但在二十一世纪的头十年里,多铁性学科表现出前所未有的活跃,已成为凝聚态物理和材料科学中最热门的学科之一。在过去的十年中,一系列里程碑式的进展使我们对多铁物理的理解更加全面和深刻,这进一步推动了这一激动人心的领域的研究前沿。更多的多铁性材料的可用性和改进的磁电性能正在接近使应用成为可能。虽然有涵盖2010年之前主要进展的开创性评论文章,但一份针对2010年以来新成就的最新评论变得势在必行。本文在简要介绍多铁性和磁电的基本知识的基础上,总结了近六年来多铁性,特别是磁电及其相关物理学的重要研究活动。我们不仅考虑单相多铁质,而且考虑多铁质异质结构。我们解决关于磁电耦合的物理机制,以便突出这一不同学科的主干。一系列关于晶格对称、磁有序、铁电的产生、电介子激发、多铁畴结构和畴壁动力学以及多铁异质结构中的界面耦合的问题,将在一个更新的物理框架中重新审视。此外,一些紧急现象和相关的物理,包括磁天空和一般拓扑结构与磁电将被讨论。审查以一系列前瞻性和前瞻性的结论结束,这些结论可能不可避免地反映了作者的偏见,但肯定是关键的。
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引用次数: 588
From quantum chaos and eigenstate thermalization to statistical mechanics and thermodynamics 从量子混沌和本征态热化到统计力学和热力学
1区 物理与天体物理 Q1 PHYSICS, CONDENSED MATTER Pub Date : 2015-09-21 DOI: 10.1080/00018732.2016.1198134
L. D'Alessio, Y. Kafri, A. Polkovnikov, M. Rigol
This review gives a pedagogical introduction to the eigenstate thermalization hypothesis (ETH), its basis, and its implications to statistical mechanics and thermodynamics. In the first part, ETH is introduced as a natural extension of ideas from quantum chaos and random matrix theory (RMT). To this end, we present a brief overview of classical and quantum chaos, as well as RMT and some of its most important predictions. The latter include the statistics of energy levels, eigenstate components, and matrix elements of observables. Building on these, we introduce the ETH and show that it allows one to describe thermalization in isolated chaotic systems without invoking the notion of an external bath. We examine numerical evidence of eigenstate thermalization from studies of many-body lattice systems. We also introduce the concept of a quench as a means of taking isolated systems out of equilibrium, and discuss results of numerical experiments on quantum quenches. The second part of the review explores the implications of quantum chaos and ETH to thermodynamics. Basic thermodynamic relations are derived, including the second law of thermodynamics, the fundamental thermodynamic relation, fluctuation theorems, the fluctuation–dissipation relation, and the Einstein and Onsager relations. In particular, it is shown that quantum chaos allows one to prove these relations for individual Hamiltonian eigenstates and thus extend them to arbitrary stationary statistical ensembles. In some cases, it is possible to extend their regimes of applicability beyond the standard thermal equilibrium domain. We then show how one can use these relations to obtain nontrivial universal energy distributions in continuously driven systems. At the end of the review, we briefly discuss the relaxation dynamics and description after relaxation of integrable quantum systems, for which ETH is violated. We present results from numerical experiments and analytical studies of quantum quenches at integrability. We introduce the concept of the generalized Gibbs ensemble and discuss its connection with ideas of prethermalization in weakly interacting systems.
本文对特征态热化假说(ETH)、其基础及其在统计力学和热力学中的意义进行了教学介绍。在第一部分中,ETH作为量子混沌和随机矩阵理论(RMT)思想的自然延伸被介绍。为此,我们简要概述了经典混沌和量子混沌,以及RMT及其一些最重要的预测。后者包括可观测值的能级统计、特征态分量和矩阵元素。在此基础上,我们引入了ETH,并表明它允许人们在不调用外部浴池概念的情况下描述孤立混沌系统中的热化。我们从多体晶格系统的研究中检验本征态热化的数值证据。我们还介绍了猝灭的概念,作为使孤立系统脱离平衡的一种手段,并讨论了量子猝灭的数值实验结果。第二部分探讨了量子混沌和ETH对热力学的影响。导出了基本热力学关系,包括热力学第二定律、基本热力学关系、涨落定理、涨落-耗散关系以及爱因斯坦和昂萨格关系。特别是,量子混沌允许人们证明这些关系的个别哈密顿特征态,从而将它们扩展到任意平稳统计系综。在某些情况下,有可能将它们的适用范围扩展到标准热平衡领域之外。然后,我们展示了如何使用这些关系来获得连续驱动系统中的非平凡通用能量分布。在回顾的最后,我们简要讨论了违反ETH的可积量子系统的弛豫动力学和弛豫后的描述。本文给出了可积量子猝灭的数值实验和解析研究结果。我们引入了广义Gibbs系综的概念,并讨论了它与弱相互作用系统中预热化思想的联系。
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引用次数: 1541
Quantum ergodicity and energy flow in molecules 量子遍历性和分子中的能量流动
1区 物理与天体物理 Q1 PHYSICS, CONDENSED MATTER Pub Date : 2015-07-04 DOI: 10.1080/00018732.2015.1109817
D. Leitner
We review a theory for coupled many-nonlinear oscillator systems that describes quantum ergodicity and energy flow in molecules. The theory exploits the isomorphism between quantum energy flow in Fock space, that is, vibrational state space, and single-particle quantum transport in disordered solid-state systems. The quantum ergodicity transition in molecules is thereby analogous to the Anderson transition in disordered solids. The theory reviewed here, local random matrix theory (LRMT), describes the nature of the quantum ergodicity transition, statistical properties of vibrational eigenstates, and quantum energy flow through the vibrational states of molecules. Predictions of LRMT have been observed in computational studies of coupled nonlinear oscillator systems, which are summarized here. We also review applications of LRMT to molecular spectroscopy and chemical reaction rate theory, including adoption of LRMT in theories that predict rates of conformational change of molecules taking place at energies corresponding to those below and above the quantum ergodicity transition. A number of specific examples are reviewed, including the application of LRMT to predict (1) dilution factors of IR spectra of organic molecules, (2) rates of conformational change in chemical and photochemical reactions, (3) conformational dynamics of biological molecules in molecular beams, (4) rates of hydrogen bond breaking and rearrangement in clusters of biological molecules and water, and (5) excited state proton transfer reactions in proteins.
我们回顾了一个描述分子中量子遍历性和能量流的耦合多非线性振荡系统的理论。该理论利用了Fock空间(即振动状态空间)中的量子能量流与无序固体系统中的单粒子量子输运之间的同构性。因此,分子中的量子遍历性跃迁类似于无序固体中的安德森跃迁。这里回顾的理论,局部随机矩阵理论(LRMT),描述了量子遍历跃迁的本质,振动本征态的统计特性,以及量子能量在分子振动态中的流动。LRMT的预测已经在耦合非线性振荡器系统的计算研究中被观察到,这里总结一下。我们还回顾了LRMT在分子光谱学和化学反应速率理论中的应用,包括在预测分子构象变化速率的理论中采用LRMT,这些分子的构象变化速率对应于量子遍历跃迁以下和以上的能量。回顾了一些具体的例子,包括LRMT应用于预测(1)有机分子红外光谱的稀释系数,(2)化学和光化学反应中的构象变化速率,(3)分子束中生物分子的构象动力学,(4)生物分子和水簇中氢键断裂和重排的速率,以及(5)蛋白质中的激发态质子转移反应。
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引用次数: 88
Quantum anomalous Hall effect and related topological electronic states 量子反常霍尔效应及相关拓扑电子态
1区 物理与天体物理 Q1 PHYSICS, CONDENSED MATTER Pub Date : 2015-05-04 DOI: 10.1080/00018732.2015.1068524
H. Weng, Rui Yu, X. Hu, X. Dai, Z. Fang
Over a long period of exploration, the successful observation of quantized version of anomalous Hall effect (AHE) in thin film of magnetically doped topological insulator (TI) completed a quantum Hall trio—quantum Hall effect (QHE), quantum spin Hall effect (QSHE), and quantum anomalous Hall effect (QAHE). On the theoretical front, it was understood that the intrinsic AHE is related to Berry curvature and U(1) gauge field in momentum space. This understanding established connection between the QAHE and the topological properties of electronic structures characterized by the Chern number. With the time-reversal symmetry (TRS) broken by magnetization, a QAHE system carries dissipationless charge current at edges, similar to the QHE where an external magnetic field is necessary. The QAHE and corresponding Chern insulators are also closely related to other topological electronic states, such as TIs and topological semimetals, which have been extensively studied recently and have been known to exist in various compounds. First-principles electronic structure calculations play important roles not only for the understanding of fundamental physics in this field, but also towards the prediction and realization of realistic compounds. In this article, a theoretical review on the Berry phase mechanism and related topological electronic states in terms of various topological invariants will be given with focus on the QAHE and Chern insulators. We will introduce the Wilson loop method and the band inversion mechanism for the selection and design of topological materials, and discuss the predictive power of first-principles calculations. Finally, remaining issues, challenges and possible applications for future investigations in the field will be addressed.
经过长时间的探索,在磁掺杂拓扑绝缘体(TI)薄膜中成功观测到量子化版的反常霍尔效应(AHE),完成了量子霍尔三量子霍尔效应(QHE)、量子自旋霍尔效应(QSHE)和量子反常霍尔效应(QAHE)。在理论方面,本征AHE与动量空间中的Berry曲率和U(1)规范场有关。这种认识建立了QAHE与陈恩数表征的电子结构的拓扑性质之间的联系。由于时间反转对称性(TRS)被磁化破坏,QHE系统在边缘处携带无耗散电荷电流,类似于需要外部磁场的QHE系统。QAHE和相应的陈氏绝缘体也与其他拓扑电子态密切相关,如ti和拓扑半金属,它们最近被广泛研究并已知存在于各种化合物中。第一性原理电子结构计算不仅对理解这一领域的基础物理,而且对实际化合物的预测和实现具有重要作用。在本文中,从各种拓扑不变量的角度对Berry相机制和相关的拓扑电子态进行了理论综述,重点介绍了QAHE和Chern绝缘子。我们将介绍威尔逊环路方法和带反转机制的拓扑材料的选择和设计,并讨论第一性原理计算的预测能力。最后,讨论了该领域存在的问题、挑战和未来研究的可能应用。
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引用次数: 312
Theory of the structural glass transition: a pedagogical review 结构玻璃化转换理论:教学回顾
1区 物理与天体物理 Q1 PHYSICS, CONDENSED MATTER Pub Date : 2015-05-04 DOI: 10.1080/00018732.2015.1057979
V. Lubchenko
The random first-order transition theory of the structural glass transition is reviewed in a pedagogical fashion. The rigidity that emerges in crystals and glassy liquids is of the same fundamental origin. In both cases, it corresponds with a breaking of the translational symmetry; analogies with freezing transitions in spin systems can also be made. The common aspect of these seemingly distinct phenomena is a spontaneous emergence of the molecular field, a venerable and well-understood concept. In crucial distinction from periodic crystallisation, the free energy landscape of a glassy liquid is vastly degenerate, which gives rise to new length and time scales while rendering the emergence of rigidity gradual. We obviate the standard notion that to be mechanically stable a structure must be essentially unique; instead, we show that bulk degeneracy is perfectly allowed but should not exceed a certain value. The present microscopic description thus explains both crystallisation and the emergence of the landscape regime followed by vitrification in a unified, thermodynamics-rooted fashion. The article contains a self-contained exposition of the basics of the classical density functional theory and liquid theory, which are subsequently used to quantitatively estimate, without using adjustable parameters, the key attributes of glassy liquids, viz., the relaxation barriers, glass transition temperature, and cooperativity size. These results are then used to quantitatively discuss many diverse glassy phenomena, including the intrinsic connection between the excess liquid entropy and relaxation rates, the non-Arrhenius temperature dependence of α-relaxation, the dynamic heterogeneity, violations of the fluctuation-dissipation theorem, glass ageing and rejuvenation, rheological and mechanical anomalies, super-stable glasses, enhanced crystallisation near the glass transition, the excess heat capacity and phonon scattering at cryogenic temperatures, the Boson peak and plateau in thermal conductivity, and the puzzling midgap electronic states in amorphous chalcogenides.
以教学的方式回顾了结构玻璃跃迁的随机一阶跃迁理论。在晶体和玻璃状液体中出现的刚性具有相同的基本起源。在这两种情况下,它都对应于平动对称性的破坏;也可以用自旋系统中的冻结跃迁作类比。这些看似不同的现象的共同之处是分子领域的自发出现,这是一个值得尊敬和很好理解的概念。与周期性结晶的关键区别是,玻璃状液体的自由能景观是巨大的简并,这产生了新的长度和时间尺度,同时使刚性逐渐出现。我们摒弃了这样的标准观念:一个结构要具有机械稳定性,就必须在本质上是唯一的;相反,我们表明体积简并是完全允许的,但不应超过某个值。因此,目前的微观描述以一种统一的、基于热力学的方式解释了结晶和玻璃化后景观制度的出现。这篇文章包含了经典密度泛函理论和液体理论基础的独立阐述,随后用于定量估计玻璃状液体的关键属性,即弛豫势垒、玻璃化转变温度和协同度大小,而不使用可调参数。这些结果随后被用于定量讨论许多不同的玻璃化现象,包括过量液体熵和弛豫率之间的内在联系,α-弛豫的非arrhenius温度依赖性,动态非均质性,涨落耗散定理的违反,玻璃老化和返老返老,流变和机械异常,超稳定玻璃,玻璃化转变附近的增强结晶,超低温下的过剩热容量和声子散射,导热系数中的玻色子峰和平台,以及非晶硫族化合物中令人困惑的间隙电子态。
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引用次数: 52
Landscape and flux theory of non-equilibrium dynamical systems with application to biology 非平衡动力系统的景观与通量理论及其在生物学上的应用
1区 物理与天体物理 Q1 PHYSICS, CONDENSED MATTER Pub Date : 2015-01-02 DOI: 10.1080/00018732.2015.1037068
Jin Wang
We present a review of the recently developed landscape and flux theory for non-equilibrium dynamical systems. We point out that the global natures of the associated dynamics for non-equilibrium system are determined by two key factors: the underlying landscape and, importantly, a curl probability flux. The landscape (U) reflects the probability of states (P) () and provides a global characterization and a stability measure of the system. The curl flux term measures how much detailed balance is broken and is one of the two main driving forces for the non-equilibrium dynamics in addition to the landscape gradient. Equilibrium dynamics resembles electron motion in an electric field, while non-equilibrium dynamics resembles electron motion in both electric and magnetic fields. The landscape and flux theory has many interesting consequences including (1) the fact that irreversible kinetic paths do not necessarily pass through the landscape saddles; (2) non-equilibrium transition state theory at the new saddle on the optimal paths for small but finite fluctuations; (3) a generalized fluctuation–dissipation relationship for non-equilibrium dynamical systems where the response function is not just equal to the fluctuations at the steady state alone as in the equilibrium case but there is an additional contribution from the curl flux in maintaining the steady state; (4) non-equilibrium thermodynamics where the free energy change is not just equal to the entropy production alone, as in the equilibrium case, but also there is an additional house-keeping contribution from the non-zero curl flux in maintaining the steady state; (5) gauge theory and a geometrical connection where the flux is found to be the origin of the gauge field curvature and the topological phase in analogy to the Berry phase in quantum mechanics; (6) coupled landscapes where non-adiabaticity of multiple landscapes in non-equilibrium dynamics can be analyzed using the landscape and flux theory and an eddy current emerges from the non-zero curl flux; (7) stochastic spatial dynamics where landscape and flux theory can be generalized for non-equilibrium field theory. We provide concrete examples of biological systems to demonstrate the new insights from the landscape and flux theory. These include models of (1) the cell cycle where the landscape attracts the system down to an oscillation attractor while the flux drives the coherent motion on the oscillation ring, the different phases of the cell cycle are identified as local basins on the cycle path and biological checkpoints are identified as local barriers or transition states between the local basins on the cell-cycle path; (2) stem cell differentiation where the Waddington landscape for development as well as the differentiation and reprogramming paths can be quantified; (3) cancer biology where cancer can be described as a disease of having multiple cellular states and the cancer state as well as the normal state can be quantified as b
本文综述了近年来发展起来的非平衡动力系统景观和通量理论。我们指出,非平衡系统的相关动力学的全局性质是由两个关键因素决定的:底层景观,重要的是,旋度概率通量。景观(U)反映了状态(P)()的概率,并提供了系统的全局特征和稳定性度量。旋度通量项测量了多少细节平衡被打破,是除景观梯度外的非平衡动力学的两个主要驱动力之一。平衡动力学类似于电场中的电子运动,而非平衡动力学类似于电场和磁场中的电子运动。景观和通量理论有许多有趣的结果,包括(1)不可逆的运动路径不一定穿过景观鞍;(2)小而有限波动最优路径上的新鞍点非平衡过渡态理论;(3)非平衡动力系统的广义涨落-耗散关系,其中响应函数不仅与平衡情况下的稳态涨落相等,而且旋度通量对维持稳态有额外的贡献;(4)非平衡态热力学,其中自由能的变化不仅等于熵的产生,就像在平衡态中一样,而且在维持稳态时,非零旋度通量还起到了额外的保持性作用;(5)规范理论和一种几何联系,其中通量被发现是规范场曲率和拓扑相的起源,类似于量子力学中的Berry相;(6)耦合景观,利用景观通量理论分析非平衡动态下多个景观的非绝热性,非零旋度通量产生涡流;(7)随机空间动力学,其中景观和通量理论可以推广到非平衡场理论。我们提供了生物系统的具体例子来展示景观和通量理论的新见解。这些模型包括(1)细胞周期模型,其中景观将系统吸引到振荡吸引子,而通量驱动振荡环上的相干运动,细胞周期的不同阶段被识别为周期路径上的局部盆地,生物检查点被识别为细胞周期路径上局部盆地之间的局部障碍或过渡状态;(2)干细胞分化,其中Waddington景观的发展以及分化和重编程路径可以量化;(3)癌症生物学,其中癌症可以被描述为具有多种细胞状态的疾病,并且癌症状态和正常状态可以量化为潜在景观上的吸引力盆地,而正常状态和癌症状态之间的转换可以量化为两个吸引子之间的转换;(4)利用等位基因频率依赖选择的具体例子,可以量化超越Wright和Fisher的更一般的进化动力学;(5)生态学,量化捕食者-猎物、合作与竞争的景观和通量以及全球稳定性;(6)神经网络,其中一般不对称连接被认为是学习和记忆;基因自我调节,其中基因表达的非绝热动态可以用扩展维度的景观和通量来描述和分析处理;(7)混沌奇异吸引子,其中通量对混沌动力学至关重要;(8)空间的发展,空间景观可以用来描述过程和格局的形成。本文还对该理论的哲学意义和未来的研究进行了展望。
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引用次数: 168
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Advances in Physics
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