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Reconsidering the role of receptors for SARS-CoV-2 in clear cell renal cell carcinoma: Friends or foes 重新思考SARS-CoV-2受体在透明细胞肾细胞癌中的作用:朋友还是敌人
Pub Date : 2023-01-17 DOI: 10.1002/mef2.31
Aimin Jiang, Le Qu, Bing Liu, Anbang Wang, Linhui Wang

At the end of 2019, the new coronavirus began to spread around the world. World Health Organization named this virus SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2), which caused coronavirus disease (COVID-19). In most people without underlying medical conditions, symptoms of SARS-CoV-2 infection are often mild and nonlethal. However, patients with cancer have significantly higher rates of severe SARS-CoV-2 infection and disease-related mortality than normal individuals.1 Numerous studies have shown that progressive malignancy is an independent risk factor for severe SARS-CoV-2 infection and related death. The incidence of long-term sequelae of SARS-CoV-2 infection in cancer patients is estimated at 15%–30%.2 Although the use of vaccines has reduced the chance of severe SARS-CoV-2 infection incidence, large-scale trials often exclude cancer patients. It remains to be seen how effective and safe the vaccine is in cancer patients and how long it is durable. Multiorgan single-cell sequencing analysis confirmed that key receptors for SARS-CoV-2 infection in humans include ACE2 (angiotensin-converting enzyme 2), TMPRSS2 (transmembrane serine protease 2), NRP1 (neuropilin-1), AXL (AXL receptor tyrosine kinase), FURIN, and CTSL1 (cathepsin L1).3 SARS-CoV-2 infection may directly or indirectly lead to acute kidney injury, which may be related to the cytophilic effects of the virus and cytokine-induced systemic inflammatory responses. These receptors may play a key role in SARS-CoV-2 infection-induced acute kidney injury and even death. These key receptors provide crucial evidence for the development of antiviral drugs for SARS-CoV-2. However, further research on these receptors in cancer patients is warranted.

First, the expression profiling of prognosis prediction was investigated in multicancers. We found that except TMPRSS2, the remaining five receptors (ACE2, NRP1, AXL, FURIN, and CTSL1) were upregulated in various cancers, especially in kidney renal clear cell carcinoma (KIRC) (Figure 1A). The relationship between these receptors and the prognosis of cancer patients was analyzed. The results suggested that these four receptors, ACE2, NRP1, FURIN, and CTSL1, were prognostic risk factors in various cancers such as glioma, while in KIRC, they are protective factors for overall survival (Figure 1B). Similarly, ACE2, NRP1, and CTSL1 receptors were prognostic risk factors in gliomas and other tumors, and protective factors for disease progression-free survival in KIRC (Figure 1B). The protective induction of these three receptors on KIRC was also confirmed in the GSE29609 data set and the Japan-KIRC database (Figure 1C). The expression pattern of SARS-CoV-2 infection-related receptors in KIRC is different from other malignancies. ACE2, NRP1, and CTSL1 were highly expressed in KIRC tissues, but they were prognostic protective factors for patients. This may be rela

2019年底,新型冠状病毒开始在全球传播。世界卫生组织将这种病毒命名为SARS-CoV-2(严重急性呼吸综合征冠状病毒2),这种病毒导致了冠状病毒病(COVID-19)。在大多数没有潜在疾病的人中,SARS-CoV-2感染的症状通常是轻微的,非致命的。然而,癌症患者的严重SARS-CoV-2感染率和疾病相关死亡率明显高于正常人大量研究表明,进行性恶性肿瘤是严重SARS-CoV-2感染及相关死亡的独立危险因素。癌症患者感染SARS-CoV-2的长期后遗症发生率估计为15% - 30%尽管疫苗的使用降低了严重的SARS-CoV-2感染发生率,但大规模试验往往将癌症患者排除在外。这种疫苗对癌症患者的有效性和安全性以及它的持续时间还有待观察。多器官单细胞测序分析证实,人感染SARS-CoV-2的关键受体包括ACE2(血管紧张素转换酶2)、TMPRSS2(跨膜丝氨酸蛋白酶2)、NRP1(神经肽-1)、AXL (AXL受体酪氨酸激酶)、FURIN和CTSL1(组织蛋白酶L1)SARS-CoV-2感染可直接或间接导致急性肾损伤,这可能与病毒的嗜细胞作用和细胞因子诱导的全身炎症反应有关。这些受体可能在SARS-CoV-2感染诱导的急性肾损伤甚至死亡中发挥关键作用。这些关键受体为SARS-CoV-2抗病毒药物的开发提供了重要证据。然而,对这些受体在癌症患者中的进一步研究是有必要的。首先,研究了多癌患者预后预测的表达谱。我们发现,除TMPRSS2外,其余五种受体(ACE2、NRP1、AXL、FURIN和CTSL1)在各种癌症中均上调,尤其是在肾透明细胞癌(KIRC)中(图1A)。分析了这些受体与肿瘤患者预后的关系。结果表明,ACE2、NRP1、FURIN和CTSL1这四种受体是胶质瘤等各种癌症的预后危险因素,而在KIRC中,它们是总生存的保护因素(图1B)。同样,ACE2、NRP1和CTSL1受体是胶质瘤和其他肿瘤的预后危险因素,也是KIRC中疾病无进展生存的保护因素(图1B)。GSE29609数据集和Japan-KIRC数据库也证实了这三种受体对KIRC的保护诱导作用(图1C)。SARS-CoV-2感染相关受体在KIRC中的表达模式不同于其他恶性肿瘤。ACE2、NRP1和CTSL1在KIRC组织中高表达,但它们是患者预后的保护因素。这可能与肾脏器官的特异性有关。与其他肿瘤不同,肾癌的免疫浸润是独特的,可能与肾脏发育的胚胎起源有关。在SARS-CoV-2流行期间,虽然ACE2、NRP1和CTSL1表现出保护作用,但我们不能忽视KIRC患者的独特性,他们可能更容易感染SARS-CoV-2病毒。其次,我们分析了ACE2、NRP1和CTSL1三种受体作为对抗SARS-CoV-2感染的分子靶点的有效性。根据表达水平,根据各受体的中位表达水平将TCGA KIRC患者分为高表达和低表达两类。然后,我们从GDSC数据库中检测两类患者对分子抑制剂的半最大抑制浓度反应浓度。结果显示,ACE2高表达的患者对NSC.8787、厄洛替尼和艾替隆B最敏感(图S1)。该图表列出了具有最显著差异反应的前五种分子抑制剂。NRP1高表达的患者对Embelin、chr .99021、VX.702等药物最为敏感。CTSL1高表达的患者对NSC.8787、MG.132和索拉非尼更敏感(图S1)。从敏感分子抑制剂的交叉处,得到8个具有明显差异反应性的分子抑制剂,按p值排序依次为环巴胺、艾替隆B、FH535、吉西他滨、GSK.650394、JNK.9L、NSC.87877、紫草素(图1D)。COVID-19药物和基因集文库网站也显示,吉西他滨、GSK.650394和紫草素已被实验测试为SARS-CoV-2病毒的抑制剂药物该结果验证了ACE2、NRP1和CTSL1作为SARS-CoV-2抑制靶点的可行性和结果的可靠性。cycloparamine、epothilone B、FH535尚未进行药物临床试验,是后续研究的一个有价值的方向。 最后,我们分析了6种感染受体ACE2、TMPRSS2、NRP1、AXL、FURIN和CTSL1与KIRC信号通路的相关性。结果表明,ACE2与脂肪形成、胆酸代谢、脂肪酸代谢、PI3K-AKT-mTOR信号通路呈显著正相关,与根尖连接、缺氧、KRAS、TGF-β信号通路呈显著负相关。NRP1与TGF-β信号通路、UV反应、KRAS信号通路、有丝分裂纺锤体信号通路呈正相关,与氧化磷酸化、胆固醇、DNA修复显著负相关。CTSL1与糖酵解、mTORC1和MYC信号通路呈正相关,但与KRAS、肌生成和根尖表面呈负相关。同样,ACE2、NRP1和CTSL1与PI3K-AKT-mTOR和蛋白分泌信号通路呈显著正相关(图1E)。抑制这两种信号通路的激活可能达到抑制SARS-CoV-2感染的目的。虽然ACE2、NRP1和CTSL1在肿瘤水平上是KIRC患者预后的有利因素,但在SARS-CoV-2流行期间,特别是在最近的Omicron流行期间,对KIRC患者的保护应加强,这可能容易被肿瘤学家忽视此外,我们还评估了靶向ACE2、NRP1和CTSL1对SARS-CoV-2的有效性,并获得了8种潜在药物。我们还分析了六种宿主受体在各种KIRC信号通路中的富集情况。综上所述,尽管受体是KIRC患者的保护因子,但由于其对SARS-CoV-2病毒的易感性可能更高,因此也应加强其保护作用。我们应该在靶向这些受体和保护肾癌患者免受病毒侵害之间取得平衡。蒋爱民:概念化(平等)。乐曲:形式分析(相等);可视化(平等)。刘兵:形式分析(相等);可视化(平等)。王安邦:写作-原稿(相等)。王林辉:概念化(平等)。所有作者都阅读并认可了文章。作者声明无利益冲突。不适用。
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引用次数: 1
RNA modification pattern-based subtypes reveal heterogenous clinical outcomes and tumor immunity of clear cell renal cell carcinoma 基于RNA修饰模式的亚型揭示了透明细胞肾细胞癌的异质临床结果和肿瘤免疫
Pub Date : 2023-01-04 DOI: 10.1002/mef2.30
Aimin Jiang, Zijun Xu, Xiao Fang, Di Gu, Kai Dong, Zhenjie Wu, Xinxin Gan, Bing Liu, Silun Ge, Le Qu, Peng Luo, Anbang Wang, Linhui Wang

RNA methylation plays a key role across biological processes, which could be utilized as new weapons for cancer management. However, the implication of RNA methylation regulators in cancers, especially in clear cell renal cell cancer (ccRCC), remains largely unknown. We investigated the multiomics profile of RNA methylation regulators at the pan-cancer level. We found most RNA methylation regulators were dysregulated in cancers, which might be explained by genomic mutation and copy number variation. A novel subtype of ccRCC, RNA modification cancer subtype 2 (RMCS2), was identified and verified among different ccRCC cohorts. RMCS2 led to a shortened overall survival and had an activated state of PI3K-AKT-mTOR, KRAS, and retinoic acid metabolism signals, which resulted in an immune exhausted phenotype. In summary, our findings demonstrated that the aberrance of RNA methylation regulators was a common biological phenomenon pan-cancer. Dysregulated RNA methylation patterns could reshape tumor immunity thus impacting patients' prognosis and therapeutic response, and could function as a promising tool for ccRCC patients.

RNA甲基化在整个生物过程中起着关键作用,可以作为癌症治疗的新武器。然而,RNA甲基化调节因子在癌症,特别是透明细胞肾细胞癌(ccRCC)中的意义在很大程度上仍然未知。我们在泛癌症水平上研究了RNA甲基化调节因子的多组学特征。我们发现大多数RNA甲基化调节因子在癌症中失调,这可能与基因组突变和拷贝数变异有关。在不同的ccRCC队列中发现并验证了一种新的ccRCC亚型,RNA修饰癌亚型2 (RMCS2)。RMCS2导致总生存期缩短,PI3K-AKT-mTOR、KRAS和视黄酸代谢信号处于激活状态,导致免疫耗竭表型。总之,我们的研究结果表明,RNA甲基化调控因子的异常是一种普遍的泛癌症生物学现象。失调的RNA甲基化模式可以重塑肿瘤免疫,从而影响患者的预后和治疗反应,并且可以作为ccRCC患者的有希望的工具。
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引用次数: 1
Mesenchymal stem cell culture in aligned porous hydroxyapatite scaffolds using a multiwell plate bioreactor for bone tissue engineering 骨组织工程中多孔羟基磷灰石支架间充质干细胞的多孔板生物反应器培养
Pub Date : 2022-09-10 DOI: 10.1002/mef2.17
Gayathry G., Athira R. K., Anju M. S., Anil Kumar P. R., Harikrishna Varma P. R., Naresh Kasoju, Manoj Komath

Regeneration of bone lost by trauma, diseases and aging, and restoration of its load-bearing function are major clinical challenges. Hydroxyapatite (HA) is a clinically proven scaffold material for bone grafting, but the random-pore structure limits the homing of the cells inside the graft and the bone regeneration progresses with the resorption of the graft material. This work is based on the hypothesis that aligned through pores in the graft will lead to a faster healing by homing the local cells inside and provide a better environment for new bone formation through the graft structure. The investigation was done using aligned porous HA scaffolds seeded with human Wharton's jelly-derived mesenchymal stem cells (hWJ-MSCs) and cultured in a multiwell format bioreactor setup. The cell adhesion was studied by microscopy, cell proliferation was evaluated by Alamar blue assay and osteogenic differentiation was confirmed by biochemical and molecular assays. The results indicate that the hWJ-MSCs infiltrated through the aligned porous network of the scaffold, proliferated well when cultured in the expansion medium, and differentiated into osteogenic lineage when cultured in the differentiation medium.

创伤、疾病和衰老导致的骨丢失的再生及其承载功能的恢复是临床面临的主要挑战。羟基磷灰石(Hydroxyapatite, HA)是临床证实的一种用于骨移植的支架材料,但其随机孔结构限制了细胞在移植物内部的归巢,骨再生过程需要随着移植物材料的吸收而进行。这项工作是基于这样的假设,即通过移植物中的孔隙排列可以通过将局部细胞归巢在内部而导致更快的愈合,并通过移植物结构为新骨形成提供更好的环境。该研究使用排列多孔透明质酸支架,植入人类沃顿氏凝胶源间充质干细胞(hWJ-MSCs),并在多孔式生物反应器中培养。显微镜下观察细胞粘附情况,Alamar蓝法观察细胞增殖情况,生化及分子检测证实成骨分化。结果表明,hWJ-MSCs通过支架的排列多孔网络浸润,在膨胀培养基中培养时增殖良好,在分化培养基中培养时分化为成骨谱系。
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引用次数: 0
Artificial intelligence revolution in structure prediction for entire proteomes 人工智能在整个蛋白质组结构预测中的革命
Pub Date : 2022-09-01 DOI: 10.1002/mef2.19
Jun Zou
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引用次数: 1
Autophagy‐independent mitochondrial quality control: Mechanisms and disease associations 自噬-独立线粒体质量控制:机制和疾病关联
Pub Date : 2022-09-01 DOI: 10.1002/mef2.25
Feixiang Bao, Jiahui Xiao, Lingyan Zhou, Yanhua Xie, Yueqiao Li, Yi Wu, Xingguo Liu
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引用次数: 1
Sodium Danshensu mediates human T lymphocyte activation via NF‐κB and MAPK pathway regulation 丹参素钠通过NF-κB和MAPK通路调节介导人T淋巴细胞活化
Pub Date : 2022-09-01 DOI: 10.1002/mef2.21
Yanan Chen, Rongrong Tian, Jin Xue, Jie Yu, Haibo Wang
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引用次数: 0
In vivo gene therapy with CRISPR–Cas9: A promising therapeutic strategy to cure inherited diseases CRISPR–Cas9体内基因治疗:一种治疗遗传性疾病的有前景的策略
Pub Date : 2022-09-01 DOI: 10.1002/mef2.26
Fei Li, Taorui Wang, Qiang Cheng
{"title":"In vivo gene therapy with CRISPR–Cas9: A promising therapeutic strategy to cure inherited diseases","authors":"Fei Li, Taorui Wang, Qiang Cheng","doi":"10.1002/mef2.26","DOIUrl":"https://doi.org/10.1002/mef2.26","url":null,"abstract":"","PeriodicalId":74135,"journal":{"name":"MedComm - Future medicine","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45953606","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Implementation of deep learning in drug design 深度学习在药物设计中的应用
Pub Date : 2022-09-01 DOI: 10.1002/mef2.18
Bo Yang, Kan Li, Xiuqin Zhong, Jun Zou
{"title":"Implementation of deep learning in drug design","authors":"Bo Yang, Kan Li, Xiuqin Zhong, Jun Zou","doi":"10.1002/mef2.18","DOIUrl":"https://doi.org/10.1002/mef2.18","url":null,"abstract":"","PeriodicalId":74135,"journal":{"name":"MedComm - Future medicine","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41479025","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
A novel computational framework for integrating multidimensional data to enhance accuracy in predicting the prognosis of colorectal cancer 一种整合多维数据的新型计算框架,以提高预测结直肠癌预后的准确性
Pub Date : 2022-09-01 DOI: 10.1002/mef2.27
Qinran Zhang, Yuhong Xu, Shiyang Kang, Junquan Chen, Zhihao Yao, Haitao Wang, Qi-Nian Wu, Qi Zhao, Qihua Zhang, Ruifeng Xu, Xiufen Zou, Hui‐yan Luo
{"title":"A novel computational framework for integrating multidimensional data to enhance accuracy in predicting the prognosis of colorectal cancer","authors":"Qinran Zhang, Yuhong Xu, Shiyang Kang, Junquan Chen, Zhihao Yao, Haitao Wang, Qi-Nian Wu, Qi Zhao, Qihua Zhang, Ruifeng Xu, Xiufen Zou, Hui‐yan Luo","doi":"10.1002/mef2.27","DOIUrl":"https://doi.org/10.1002/mef2.27","url":null,"abstract":"","PeriodicalId":74135,"journal":{"name":"MedComm - Future medicine","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2022-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41498721","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Changing clinical features of the 2022 monkeypox global health emergency 2022年猴痘全球突发卫生事件的临床特征变化
Pub Date : 2022-09-01 DOI: 10.1002/mef2.24
D. Baptista‐Hon, Gabriel João W. Fesalbon, Olivia Monteiro
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引用次数: 1
期刊
MedComm - Future medicine
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