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Observations of nemaline bodies in muscle biopsies of critically ill patients infected with SARS-CoV-2. 严重急性呼吸系统综合征冠状病毒2型感染的危重患者肌肉活检中的内盐体观察。
Pub Date : 2023-10-09 DOI: 10.1093/jmicro/dfac072
Frank Vandenabeele, Sjoerd Stevens, Tim Snijders, Björn Stessel, Jasperina Dubois, Luc J C van Loon, Ivo Lambrichts, Anouk Agten

Patients infected with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) who have been admitted to the intensive care unit (ICU) often face months of physical disability after discharge. To optimize recovery, it is important to understand the role of musculoskeletal alterations in critically ill patients infected with SARS-CoV-2. The main aim of the present study was to describe the presence and morphology of nemaline bodies found in the skeletal muscle tissue from critically ill patients infected with SARS-CoV-2. In n = 7 patients infected with SARS-CoV-2, ultrastructural characteristics of vastus lateralis muscle obtained on days 1-3 and days 5-8 following ICU admission were investigated in more detail with electron microscopy. Those muscle biopsies consistently showed variable degrees of myofiber necrosis and myofibrillar disorganization. In 4/7 (57%) patients on days 5-8, the Z-line material accumulated into nemaline bodies with a typical lattice-like appearance at higher magnification, similar to that found in nemaline myopathy. This study is the first to describe the disintegration of myofibrils and the accumulation of Z-line material into nemaline bodies in the skeletal muscle tissue obtained from critically ill coronavirus disease-19 patients following ICU admission, which should be interpreted primarily as a non-specific pathological response of extreme myofibrillar disintegration associated with myofiber necrosis.

入住重症监护室(ICU)的严重急性呼吸系统综合征冠状病毒2型(SARS-CoV-2)患者出院后通常会面临数月的身体残疾。为了优化康复,了解肌肉骨骼改变在感染严重急性呼吸系统综合征冠状病毒2型的危重患者中的作用很重要。本研究的主要目的是描述在感染严重急性呼吸系统综合征冠状病毒2型的危重患者的骨骼肌组织中发现的nemaline小体的存在和形态。In n = 对7例感染严重急性呼吸系统综合征冠状病毒2型的患者,在ICU入院后第1-3天和第5-8天获得的股外侧肌超微结构特征进行了更详细的电子显微镜研究。这些肌肉活检始终显示不同程度的肌纤维坏死和肌纤维紊乱。在第5-8天的4/7(57%)名患者中,Z-线物质在更高的放大倍数下积聚成具有典型晶格状外观的线状体,类似于在线状肌病中发现的。这项研究首次描述了重症冠状病毒病患者19入住ICU后骨骼肌组织中肌原纤维的分解和Z-线物质积累成肌原纤维体的情况,这应主要解释为与肌原纤维坏死相关的极端肌原纤维分解的非特异性病理反应。
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引用次数: 0
Model-based deconvolution for particle analysis applied to a through-focus series of HAADF-STEM images. 基于模型的反卷积粒子分析应用于HAADF-STEM图像的全聚焦序列。
Pub Date : 2023-08-04 DOI: 10.1093/jmicro/dfac070
Tetsu Ohsuna, Keiichiro Oh-Ishi

This paper presents an approach for determining the sizes and three-dimensional (3D) positions of nanoparticles from a through-focus series of high-angle annular dark-field scanning transmission electron microscopy images. By assuming spherical particles with uniform density, the sizes and 3D positions can be derived via Wiener deconvolution using a series of kernels prepared by the convolution of the 3D point spread function of the electron beam and the 3D density distribution of spheres with different radii. This process is referred to as a model-based deconvolution. Four 3D datasets with a volume size of 148 × 148 × 560 nm3 were obtained from the four sets of 256 high-angle annular dark-field scanning transmission electron microscopy images of 256 × 256 pixels taken from the same field of view under the through-focus condition. The 3D positions and radii of 14 particles in each 3D dataset were derived using the model-based deconvolution for ∼8 min. The observation errors of the 3D position were estimated as σx ≅ σy ≅ 0.3 nm and σz < 1.6 nm.

本文提出了一种从高角度环形暗场扫描透射电子显微镜图像中确定纳米颗粒尺寸和三维位置的方法。假设密度均匀的球形粒子,利用电子束的三维点扩散函数与不同半径球体的三维密度分布进行卷积得到的一系列核,通过维纳反卷积得到粒子的尺寸和三维位置。这个过程被称为基于模型的反褶积。在透焦条件下,从同一视场拍摄的4组256张256 × 256像素的高角度环形暗场扫描透射电镜图像中获得4个体积大小为148 × 148 × 560 nm3的三维数据集。每个3D数据集中14个粒子的3D位置和半径使用基于模型的反褶积导出,时间约8分钟。三维位置的观测误差估计为σx × σy × 0.3 nm和σz
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引用次数: 0
Correlative light and volume electron microscopy to study brain development. 研究大脑发育的相关光学和体电子显微镜。
Pub Date : 2023-08-04 DOI: 10.1093/jmicro/dfad002
Shuichi Hayashi, Nobuhiko Ohno, Graham Knott, Zoltán Molnár

Recent advances in volume electron microscopy (EM) have been driving our thorough understanding of the brain architecture. Volume EM becomes increasingly powerful when cells and their subcellular structures that are imaged in light microscopy are correlated to those in ultramicrographs obtained with EM. This correlative approach, called correlative light and volume electron microscopy (vCLEM), is used to link three-dimensional ultrastructural information with physiological data such as intracellular Ca2+ dynamics. Genetic tools to express fluorescent proteins and/or an engineered form of a soybean ascorbate peroxidase allow us to perform vCLEM using natural landmarks including blood vessels without immunohistochemical staining. This immunostaining-free vCLEM has been successfully employed in two-photon Ca2+ imaging in vivo as well as in studying complex synaptic connections in thalamic neurons that receive a variety of specialized inputs from the cerebral cortex. In this mini-review, we overview how volume EM and vCLEM have contributed to studying the developmental processes of the brain. We also discuss potential applications of genetic manipulation of target cells using clustered regularly interspaced short palindromic repeats-associated protein 9 and subsequent volume EM to the analysis of protein localization as well as to loss-of-function studies of genes regulating brain development. We give examples for the combinatorial usage of genetic tools with vCLEM that will further enhance our understanding of regulatory mechanisms underlying brain development.

体积电子显微镜(EM)的最新进展推动了我们对大脑结构的深入了解。如果将光学显微镜观察到的细胞及其亚细胞结构与电子显微镜获得的超显微照片中的细胞及其亚细胞结构进行关联,那么体量电子显微镜就会变得越来越强大。这种相关方法被称为相关光学和体电子显微镜(vCLEM),用于将三维超微结构信息与细胞内 Ca2+ 动态等生理数据联系起来。利用表达荧光蛋白和/或大豆抗坏血酸过氧化物酶工程形式的基因工具,我们可以利用包括血管在内的自然地标进行 vCLEM,而无需进行免疫组织化学染色。这种无免疫染色的 vCLEM 已成功应用于体内双光子 Ca2+ 成像以及丘脑神经元复杂突触连接的研究,丘脑神经元接受来自大脑皮层的各种专门输入。在这篇微型综述中,我们将概述体电磁和 vCLEM 如何为研究大脑发育过程做出贡献。我们还讨论了利用簇状规则间隔短回文重复序列相关蛋白 9 对靶细胞进行遗传操作的潜在应用,以及随后将体积电磁学应用于蛋白质定位分析和大脑发育调控基因功能缺失研究的可能性。我们举例说明了基因工具与 vCLEM 的组合使用,这将进一步加深我们对大脑发育基础调控机制的理解。
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引用次数: 0
Electron irradiation damage of amorphous epoxy resin at low electron doses. 低电子剂量下非晶态环氧树脂的电子辐照损伤。
Pub Date : 2023-08-04 DOI: 10.1093/jmicro/dfac068
Kaname Yoshida, Hsin-Hui Huang, Tomohiro Miyata, Yohei K Sato, Hiroshi Jinnai

The mechanisms of electron irradiation damage to epoxy resin samples were evaluated using their electron diffraction patterns and electron energy-loss spectra. Their electron diffraction patterns consisted of three indistinct halo rings. The halo ring corresponding to an intermolecular distance of ∼6.4 Å degraded rapidly. Such molecular-scale collapse could have been caused by cross-linking between molecular chains. The degree of electron irradiation damage to the samples changed with the accelerating voltage. The tolerance dose limit of the epoxy resin estimated from the intensity of the halo ring was found to be improved at a higher accelerating voltage. Changes in low-loss electron energy-loss spectra indicated that the mass loss of the epoxy resin was remarkable in the early stage of electron irradiation.

利用电子衍射图和电子能量损失谱分析了环氧树脂样品的电子辐照损伤机理。它们的电子衍射图由三个模糊的晕环组成。对应于分子间距离为~ 6.4 Å的晕环迅速降解。这种分子尺度的坍塌可能是由分子链之间的交联引起的。电子辐照对样品的损伤程度随加速电压的变化而变化。在较高的加速电压下,由晕环强度估计的环氧树脂的耐受剂量限值得到提高。低损耗电子能谱的变化表明,环氧树脂在电子辐照初期的质量损失是显著的。
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引用次数: 1
Extraction of phase information approximating the demagnetization field within a thin-foiled magnet using electron holography observation. 利用电子全息观察提取近似于薄片状磁体退磁场的相位信息。
Pub Date : 2023-08-04 DOI: 10.1093/jmicro/dfac066
Sujin Lee, Atsuko Sato, Takehiro Tamaoka, Kunio Yubuta, Mitsunari Auchi, Taisuke Sasaki, Tadakatsu Ohkubo, Kazuhiro Hono, Yasukazu Murakami

This paper proposes a method that provides a phase image related to the demagnetization field (Hd) within a thin-foil permanent magnet using electron holography. The observation of Hd remains a significant challenge because electron holography in principle allows only imaging of the magnetic flux density (B), which is a mixture of the contributions from magnetization (M), stray magnetic field (Hs) outside of the specimen and Hd inside of the specimen. The phase map approximating Hd, which was determined by processing of the electron holography observation from a Nd2Fe14B single-crystalline specimen, showed a good agreement with the prediction by micromagnetic theory. With respect to permanent magnets, this method can be applied to examinations about the coercivity mechanism, which is sensitive to the demagnetization field. Graphical Abstract.

本文提出了一种利用电子全息技术在薄型永磁体中获得与退磁场相关的相位图像的方法。Hd的观察仍然是一个重大的挑战,因为电子全息术原则上只允许磁通密度(B)的成像,这是磁化(M),杂散磁场(Hs)和样品内部Hd的混合贡献。通过对Nd2Fe14B单晶样品进行电子全息观察,得到了近似Hd的相图,与微磁理论预测结果吻合较好。对于永磁体,该方法可用于对退磁场敏感的矫顽力机理的检验。图形抽象。
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引用次数: 0
Magnetization controlled by crystallization in soft magnetic Fe-Si-B-P-Cu alloys. 软磁Fe-Si-B-P-Cu合金的结晶控制磁化强度。
Pub Date : 2023-08-04 DOI: 10.1093/jmicro/dfac042
Hiroshi Nakajima, Akihiro Osako, Noriharu Yodoshi, Yoshiharu Yamada, Hirofumi Tsukasaki, Ken Harada, Yuki Sakai, Kei Shigematsu, Takumi Nishikubo, Masaki Azuma, Shigeo Mori

Soft magnetic materials have low coercive fields and high permeability. Recently, nanocrystalline alloys obtained using annealing amorphous alloys have attracted much interest since nanocrystalline alloys with small grain sizes of tens of nanometers exhibit low coercive fields comparable to that of amorphous alloys. Since nanocrystalline soft magnetic materials attain remarkable soft magnetic properties by controlling the grain size, the crystal grains' microstructure has a substantial influence on the soft magnetic properties. In this research, we examined the magnetic properties of Fe-Si-B-P-Cu nanocrystalline soft magnetic alloys obtained by annealing amorphous alloys. During crystallization, the observation findings reveal the correlation between the generated microstructures and soft magnetic properties.

软磁材料具有低矫顽力和高磁导率的特点。近年来,利用非晶合金退火获得的纳米晶合金引起了人们的广泛关注,因为几十纳米的小晶粒尺寸的纳米晶合金具有与非晶合金相当的低矫顽力场。由于纳米晶软磁材料通过控制晶粒尺寸来获得优异的软磁性能,因此晶粒的微观结构对材料的软磁性能有重要影响。在这项研究中,我们测试了Fe-Si-B-P-Cu纳米晶软磁合金的磁性能。在结晶过程中,观察结果揭示了生成的微结构与软磁性能之间的相关性。
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引用次数: 1
Different atomic contrasts in HAADF images and EELS maps of rutile TiO2. 金红石型TiO2的HAADF图像和EELS图的不同原子对比。
Pub Date : 2023-08-04 DOI: 10.1093/jmicro/dfac067
Chisaki Iwashimizu, Mitsutaka Haruta, Takashi Nemoto, Hiroki Kurata

High-angle annular dark-field (HAADF) imaging and elemental mapping at the atomic scale by scanning transmission electron microscopy (STEM) combined with electron energy-loss spectroscopy (EELS) are widely used for material characterization, in which quantitative understanding of the contrast of the image is required. Here, we report an unexpected image contrast in the elemental mapping of rutile TiO2, where the Ti L2,3 map shows an anisotropic elliptical shape that extends along the long axis in the octahedral structure, while the atomic contrast of Ti columns in the HAADF image is almost circular. Multi-slice simulation reveals that unique electron channeling related to the rutile structure and the difference of the potentials between HAADF and EELS cause the different atomic contrasts in the two images.

扫描透射电子显微镜(STEM)结合电子能量损失谱(EELS)的高角度环形暗场(HAADF)成像和原子尺度元素映射被广泛用于材料表征,其中需要定量了解图像的对比度。在这里,我们报告了金红石型TiO2元素映射中意想不到的图像对比,其中Ti L2,3映射显示出沿八面体结构长轴延伸的各向异性椭圆形状,而HAADF图像中Ti柱的原子对比几乎是圆形的。多层模拟结果表明,与金红石结构有关的独特的电子通道以及HAADF和EELS之间的电势差异导致了两种图像的不同原子对比度。
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引用次数: 0
Correction to: Advances in fluorescence microscopy for orthohantavirus research. 更正:荧光显微镜用于正汉坦病毒研究的进展。
Pub Date : 2023-08-04 DOI: 10.1093/jmicro/dfad013
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引用次数: 0
Using elemental staining and mapping techniques for simultaneous visualization of biological structures in the nucleus by multichannel electron microscopy. 利用元素染色和绘图技术,通过多通道电子显微镜同时可视化细胞核中的生物结构。
Pub Date : 2023-08-04 DOI: 10.1093/jmicro/dfad022
Hilmar Strickfaden, Natnael Abate, Christian Förster, Frank Wuest, D Alan Underhill, Michael J Hendzel

Transmission electron microscopy (TEM) has been essential in defining the structural organization of the cell due to its ability to image cell structures at molecular resolution. However, the absence of colour has made it very difficult to compare the distributions and relationships of two or more types of biomolecules simultaneously if they lack clear morphological distinctions. Furthermore, single-channel information limits functional analysis, particularly in the nucleoplasm, where fibrillar material could be chromatin, ribonucleic acid or protein. Where specific stains exist to discriminate among these molecules, they cannot be combined because conventional TEM is a single-channel technology. A potential path around this barrier is through electron spectroscopic imaging (ESI). ESI can map the distributions of chemical elements within an ultrathin section. Here, we present methods to stain specific molecules with elements that ESI can visualize to enable multichannel electron microscopy.

透射电子显微镜(TEM)由于其在分子分辨率上成像细胞结构的能力,在定义细胞的结构组织方面是必不可少的。然而,如果两种或两种以上的生物分子缺乏明确的形态区别,那么颜色的缺失使得同时比较它们的分布和关系变得非常困难。此外,单通道信息限制了功能分析,特别是在核质中,其中纤维物质可能是染色质,核糖核酸或蛋白质。由于传统的透射电镜是一种单通道技术,因此存在特定的染色剂来区分这些分子,它们不能结合在一起。绕过这一屏障的一个潜在途径是通过电子光谱成像(ESI)。ESI可以绘制出超薄切片中化学元素的分布。在这里,我们提出了用ESI可以可视化的元素染色特定分子的方法,以启用多通道电子显微镜。
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引用次数: 0
The Third Japan-Canada Microscopy Societies Joint Symposium 2022. 第三届日本-加拿大显微镜学会联合研讨会。
Pub Date : 2023-08-04 DOI: 10.1093/jmicro/dfad039
Ken Harada, Misa Hayashida
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引用次数: 0
期刊
Microscopy (Oxford, England)
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