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Fast computational approach with prior dimension reduction for three-dimensional chemical component analysis using CT data of spectral imaging. 利用光谱成像 CT 数据进行三维化学成分分析的先验降维快速计算方法。
Pub Date : 2024-12-05 DOI: 10.1093/jmicro/dfae027
Motoki Shiga, Taisuke Ono, Kenichi Morishita, Keiji Kuno, Nanase Moriguchi

Spectral image (SI) measurement techniques, such as X-ray absorption fine structure (XAFS) imaging and scanning transmission electron microscopy (STEM) with energy-dispersive X-ray spectroscopy (EDS) or electron energy loss spectroscopy (EELS), are useful for identifying chemical structures in composite materials. Machine-learning techniques have been developed for automatic analysis of SI data and their usefulness has been proven. Recently, an extended measurement technique combining SI with a computed tomography (CT) technique (CT-SI), such as CT-XAFS and STEM-EDS/EELS tomography, was developed to identify the three-dimensional (3D) structures of chemical components. CT-SI analysis can be conducted by combining CT reconstruction algorithms and chemical component analysis based on machine-learning techniques. However, this analysis incurs high-computational costs owing to the size of the CT-SI datasets. To address this problem, this study proposed a fast computational approach for 3D chemical component analysis in an unsupervised learning setting. The primary idea for reducing the computational cost involved compressing the CT-SI data prior to CT computation and performing 3D reconstruction and chemical component analysis on the compressed data. The proposed approach significantly reduced the computational cost without losing information about the 3D structure and chemical components. We experimentally evaluated the proposed approach using synthetic and real CT-XAFS data, which demonstrated that our approach achieved a significantly faster computational speed than the conventional approach while maintaining analysis performance. As the proposed procedure can be implemented with any CT algorithm, it is expected to accelerate 3D analyses with sparse regularized CT algorithms in noisy and sparse CT-SI datasets.

光谱图像(SI)测量技术,如 X 射线吸收精细结构(XAFS)成像和扫描透射电子显微镜(STEM)与能量色散 X 射线光谱(EDS)或电子能量损失光谱(EELS),对于确定复合材料中的化学结构非常有用。目前已开发出用于自动分析 SI 数据的机器学习技术,其实用性已得到证实。最近,一种将 SI 与计算机断层扫描(CT)技术(CT-SI)(如 CT-XAFS 和 STEM-EDS/EELS 断层扫描)相结合的扩展测量技术被开发出来,用于识别化学成分的三维(3D)结构。CT-SI 分析可通过结合 CT 重建算法和基于机器学习技术的化学成分分析来进行。然而,由于 CT-SI 数据集的大小,这种分析会产生很高的计算成本。为解决这一问题,本研究提出了一种在无监督学习环境下进行三维化学成分分析的快速计算方法。降低计算成本的主要思路是在 CT 计算之前压缩 CT-SI 数据,并在压缩数据上执行三维重建和化学成分分析。所提出的方法在不丢失三维结构和化学成分信息的情况下大大降低了计算成本。我们使用合成和真实的 CT-XAFS 数据对提出的方法进行了实验评估,结果表明我们的方法在保持分析性能的同时,计算速度明显快于传统方法。由于所提出的程序可以用任何 CT 算法来实现,因此有望在有噪声和稀疏的 CT-SI 数据集中加速稀疏正则化 CT 算法的三维分析。
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引用次数: 0
Wire-tracking of bent electric cable using X-ray CT and deep active learning. 利用 X 射线 CT 和深度主动学习对弯曲电缆进行电线跟踪。
Pub Date : 2024-12-05 DOI: 10.1093/jmicro/dfae028
Yutaka Hoshina, Takuma Yamamoto, Shigeaki Uemura

We have demonstrated a quantification of all component wires in a bent electric cable, which is necessary for discussion of cable products in actual use cases. Quantification became possible for the first time because of our new technologies for image analysis of bent cables. In this paper, various image analysis techniques to detect all wire tracks in a bent cable are demonstrated. Unique cross-sectional image construction and deep active learning schemes are the most important items in this study. These methods allow us to know the actual state of cables under external loads, which makes it possible to elucidate the mechanisms of various phenomena related to cables in the field and further improve the quality of cable products.

我们展示了弯曲电缆中所有元件导线的量化,这对于讨论实际应用案例中的电缆产品非常必要。由于我们采用了对弯曲电缆进行图像分析的新技术,量化首次成为可能。本文展示了检测弯曲电缆中所有电线轨迹的各种图像分析技术。独特的横截面图像构建和深度主动学习方案是本研究的重中之重。通过这些方法,我们可以了解电缆在外部载荷作用下的实际状态,从而有可能在现场阐明与电缆相关的各种现象的机理,并进一步提高电缆产品的质量。
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引用次数: 0
Simple derivation of L-absorption spectra of 3d transition metal elements by the self-absorption effect observed in soft X-ray emission spectra. 通过软 X 射线发射光谱中观察到的自吸收效应简单推导出 3d 过渡金属元素的 L 吸收光谱。
Pub Date : 2024-10-04 DOI: 10.1093/jmicro/dfae012
Masami Terauchi, Yohei K Sato, Takaomi D Yokoyama, Takanori Murano

This study proposes a simple evaluation method for deriving L-absorption information from two L-emission spectra of 3d transition metal (TM) elements obtained at two different accelerating voltages. This method realizes a spatial identity for X-ray emission and absorption spectroscopies. This method was evaluated for the Fe L-emission spectra of Fe and its oxides and was applied to the TM L-emission spectra of MnO, Co, CoO and NiO. The derived absorption peak positions were consistent with those obtained previously at synchrotron orbital radiation facilities, which considered the core-hole effect. This simple derivation method could be useful for obtaining X-ray absorption spectroscopy distribution images from X-ray emission spectroscopy mapping data obtained by scanning electron microscopy.

本研究提出了一种简单的评估方法,可从两个不同加速电压下获得的三维过渡金属(TM)元素的两个 L 发射光谱中得出 L 吸收信息。该方法实现了 X 射线发射和吸收光谱的空间识别。对 Fe 及其氧化物的 Fe L 发射光谱进行了评估,并将此方法应用于 MnO、Co、CoO 和 NiO 的 TM L 发射光谱。推导出的吸收峰位置与之前在同步辐射轨道设施上获得的吸收峰位置一致,其中考虑到了核孔效应。这种简单的推导方法可用于从扫描电子显微镜获得的 X 射线发射光谱绘图数据中获取 X 射线吸收光谱分布图像。
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引用次数: 0
Deciphering prefrontal circuits underlying stress and depression: exploring the potential of volume electron microscopy. 解密压力和抑郁的前额叶回路:探索容积电子显微镜的潜力
Pub Date : 2024-10-04 DOI: 10.1093/jmicro/dfae036
Hirotaka Nagai

Adapting to environmental changes and formulating behavioral strategies are central to the nervous system, with the prefrontal cortex being crucial. Chronic stress impacts this region, leading to disorders including major depression. This review discusses the roles for prefrontal cortex and the effects of stress, highlighting similarities and differences between human/primates and rodent brains. Notably, the rodent medial prefrontal cortex is analogous to the human subgenual anterior cingulate cortex in terms of emotional regulation, sharing similarities in cytoarchitecture and circuitry, while also performing cognitive functions similar to the human dorsolateral prefrontal cortex. It has been shown that chronic stress induces atrophic changes in the rodent mPFC, which mirrors the atrophy observed in the subgenual anterior cingulate cortex and dorsolateral prefrontal cortex of depression patients. However, the precise alterations in neural circuitry due to chronic stress are yet to be fully unraveled. The use of advanced imaging techniques, particularly volume electron microscopy, is emphasized as critical for the detailed examination of synaptic changes, providing a deeper understanding of stress and depression at the molecular, cellular and circuit levels. This approach offers invaluable insights into the alterations in neuronal circuits within the medial prefrontal cortex caused by chronic stress, significantly enriching our understanding of stress and depression pathologies.

适应环境变化和制定行为策略是神经系统的核心,而前额叶皮质是其中的关键。慢性压力会影响这一区域,导致包括重度抑郁症在内的各种疾病。这篇综述讨论了前额叶皮层的作用和压力的影响,并强调了人类/原始人和啮齿动物大脑的异同。值得注意的是,啮齿类动物的内侧前额叶皮层(mPFC)在情绪调节方面类似于人类的扣带下前额叶皮层(sgACC),在细胞结构和电路方面有相似之处,同时还具有类似于人类背外侧前额叶皮层(DLPFC)的认知功能。研究表明,慢性压力会诱导啮齿动物 mPFC 发生萎缩性变化,这与在抑郁症患者的 sgACC 和 DLPFC 中观察到的萎缩现象相似。然而,慢性压力导致的神经回路的确切变化仍有待全面揭示。研究人员强调,使用先进的成像技术,尤其是体视电子显微镜,对于详细检查突触变化至关重要,可从分子、细胞和回路层面加深对压力和抑郁的理解。这种方法为我们深入了解慢性应激导致的 mPFC 神经元回路的改变提供了宝贵的见解,极大地丰富了我们对应激和抑郁病理的认识。
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引用次数: 0
Limitations and drawbacks of DQE estimation methods applied to electron detectors. 应用于电子探测器的 DQE 估算方法的局限性和缺点。
Pub Date : 2024-10-04 DOI: 10.1093/jmicro/dfae016
Olivier Marcelot, Cécile Marcelot, Sébastien Rolando

The detective quantum efficiency (DQE) is generally accepted as the main figure of merit for the comparison between electron detectors, and most of the time given as a unique number at the Nyquist frequency while it is known to vary with electron dose. It is usually estimated, thanks to a method improved by McMullan in 2009. The purpose of this work is to analyze and to criticize this DQE extraction method on the basis of measurement and model results, and to give recommendations for fair comparison between detectors, wondering if the DQE is the right figure of merit for electron detectors.

DQE 通常被认为是比较电子探测器优劣的主要指标,在大多数情况下,它是奈奎斯特频率下的唯一数字,但它会随电子剂量的变化而变化。它通常是通过麦克马伦(McMullan)在 2009 年改进的方法估算出来的。这项工作的目的是在测量和模型结果的基础上,分析和批评这种DQE提取方法,并就探测器之间的公平比较提出建议,质疑DQE是否是电子探测器的正确优越性。
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引用次数: 0
Retraction of: Ultrastructural immunohistochemical study of L-type amino acid transporter 1-4F2 heavy chain in tumor microvasculatures of N-butyl-N-(4-hydroxybutyl) nitrosamine (BBN) induced rat bladder carcinoma. 撤回:N-丁基-N-(4-羟基丁基)亚硝胺(BBN)诱导的大鼠膀胱癌肿瘤微血管中L型氨基酸转运体1-4F2重链的超微结构免疫组化研究
Pub Date : 2024-10-04 DOI: 10.1093/jmicro/dfae033
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引用次数: 0
Application of Hilbert-differential phase contrast to scanning transmission electron microscopy. 扫描透射电子显微镜中的希尔伯特-差分相位对比应用。
Pub Date : 2024-10-04 DOI: 10.1093/jmicro/dfae015
Haruka Iga, Toshiki Shimizu, Hiroki Minoda

We report a novel class of scanning transmission electron microscopy with Hilbert-differential phase contrast (HDP-STEM) that displays nanostructures of thin samples in a topographical manner. A semicircular π-phase plate (PP) was used as an optical device for manipulating electron waves in HDP-STEM. This is the different design from the Zernike PP used in our previous phase plate STEM (P-STEM), but both must be placed in the front focal plane of the condenser lens. HDP-STEM images of multiwalled carbon nanotubes showed higher contrast than those obtained by conventional bright-field STEM. As the PP of the HDP-STEM is nonsymmetrical, several different images were obtained by changing the detection conditions. A two-dimensional electron detector was also used to remove the scattering contrast component in the same way as with the Zernike PP and obtain an image containing only (differential) phase contrast.

我们报告了一种新型希尔伯特差分相衬扫描透射电子显微镜(HDP-STEM),它能以地形方式显示薄样品的纳米结构。在 HDP-STEM 中,半圆形 π 相板(PP)被用作操纵电子波的光学设备。这种设计不同于我们之前在相板 STEM(P-STEM)中使用的 Zernike PP,但两者都必须置于聚光透镜的前焦平面。多壁碳纳米管的 HDP-STEM 图像显示出比传统明场 STEM 更高的对比度。由于 HDP-STEM 的 PP 是非对称的,因此可以通过改变检测条件获得几种不同的图像。此外,还使用了二维电子探测器,以与泽奈克PP相同的方式去除散射对比成分,获得仅包含(差分)相位对比的图像。
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引用次数: 0
Effective alignment method using a diamond notch knife for correlative array tomography. 使用金刚石缺口刀进行相关阵列断层扫描的有效对准方法。
Pub Date : 2024-10-04 DOI: 10.1093/jmicro/dfae013
Yumi Goto, Noriko Takeda-Kamiya, Kaori Yamaguchi, Mikio Yamazaki, Kiminori Toyooka

Correlative array tomography, combining light and electron microscopy via serial sections, plays a crucial role in the three-dimensional ultrastructural visualization and molecular distribution analysis in biological structures. To address the challenges of aligning fluorescence and electron microscopy images and aligning serial sections of irregularly shaped biological specimens, we developed a diamond notch knife, a new tool for puncturing holes using a diamond needle. The diamond needle featured a triangular and right-angled tip, enabling the drilling of deep holes upon insertion into the polished block face. This study describes the application of the diamond notch knife in correlative array tomography.

通过序列切片将光学显微镜和电子显微镜结合起来的相关阵列层析技术,在生物结构的三维超微结构可视化和分子分布分析中发挥着至关重要的作用。为了解决荧光显微镜和电子显微镜图像对齐以及不规则形状生物标本序列切片对齐的难题,我们开发了一种使用钻石针刺孔的新工具--钻石切口刀。金刚石针的针尖呈三角形直角,可在插入抛光块面后钻出深孔。本研究介绍了金刚石缺口刀在相关阵列断层扫描中的应用。
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引用次数: 0
Electron holography observation of electron spin polarization around charged insulating wire. 带电绝缘线周围电子自旋极化的电子全息观察。
Pub Date : 2024-07-30 DOI: 10.1093/jmicro/dfad056
Takafumi Sato, Keiko Shimada, Zentaro Akase, Hideyuki Magara, Takeshi Tomita, Daisuke Shindo

We report direct observation by electron holography of the spin polarization of electrons in a vacuum region around a charged SiO2 wire coated with Pt-Pd. Irradiating the SiO2 wire with 300 keV electrons caused the wire to become positively charged due to the emission of secondary electrons. The spin polarization of these electrons interacting with the charged wire was observed in situ using a phase reconstruction process under an external magnetic field. The magnetic field of the spin-polarized electrons was simulated taking into account the distribution of secondary electrons and the effect of the external magnetic field.

我们报道了用电子全息术直接观察到电子自旋极化在真空区周围的带电SiO2线包覆Pt-Pd。用300 kev的电子照射SiO2导线,由于二次电子的发射,使导线带正电。在外加磁场作用下,用相重构法原位观察了这些电子与带电导线相互作用的自旋极化。考虑二次电子的分布和外加磁场的影响,对自旋极化电子的磁场进行了模拟。
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引用次数: 0
Three-dimensional nanostructure analysis of non-stained Nafion in fuel-cell electrode by combined ADF-STEM tomography. 利用 ADF-STEM 层析成像技术对燃料电池电极中未染色的 Nafion 进行三维纳米结构分析。
Pub Date : 2024-07-30 DOI: 10.1093/jmicro/dfae002
Takuji Ube

The polymer electrolyte fuel cell (PEFC) is one of the strongest candidates for a next-generation power source for vehicles which do not emit CO2 gas as exhaust gas. The key factor in PEFCs is the nano-scaled electrochemical reactions that take place on the catalyst material and an ionomer supported by a carbon support. However, because the nano-scaled morphological features of the key materials in the catalyst compound cannot be observed clearly by transmission electron microscopy, improvement of PEFC performance had been approached by an imaginal schematic diagram based on an electrochemical analysis. In this study, we revealed the nano-scaled morphological features of the PEFC electrode in three dimensions and performed a quantitative analysis of the nanostructure by the newly developed 'Combined ADF-STEM tomography technique'. This method combines information from plural annular darkfield detectors with different electron collection angles and can emphasize the difference of the electron scattering intensity between the ionomer and carbon in the cross-sectional image of the reconstructed three-dimensional (3D) data. Therefore, this segmentation method utilizing image contrast does not require a high electron beam current like that used in energy dispersive X-ray analysis, and thus is suitable for electron beam damage-sensitive materials. By eliminating the process of manually determining the thresholds for obtaining classified component data from grayscale data, the obtained 3D structures have sufficient accuracy to allow quantitative analysis and specify the nano-scaled structural parameters directly related to power generation characteristics.

聚合物电解质燃料电池(PEFC)是不排放二氧化碳(CO2)废气的汽车下一代动力源的最有力候选者之一。PEFC 的关键因素是催化剂材料和由碳支撑物支撑的离子体上发生的纳米级电化学反应。然而,由于透射电子显微镜无法清晰地观察到催化剂化合物中关键材料的纳米级形态特征,因此人们一直通过基于电化学分析的想象示意图来提高 PEFC 的性能。在本研究中,我们通过新开发的 "ADF-STEM 层析成像组合技术 "揭示了 PEFC 电极的三维纳米尺度形态特征,并对纳米结构进行了定量分析。该方法结合了多个具有不同电子收集角度的 ADF 探测器的信息,可以在重建的三维数据的横截面图像中强调离子体和碳之间电子散射强度的差异。因此,这种利用图像对比度的分割方法不需要像 EDX 分析那样的高电子束电流,因此适用于对电子束损伤敏感的材料。由于省去了从灰度数据中获取分类成分数据的人工确定阈值的过程,所获得的三维结构具有足够的准确性,可以进行定量分析,并明确与发电特性直接相关的纳米级结构参数。
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引用次数: 0
期刊
Microscopy (Oxford, England)
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