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Encapsulation, vacuolation and phagocytosis of the opportunistic fungal pathogen Cryptococcus in the liver of an immunocompetent host. 机会性真菌病原体隐球菌在免疫能力强的宿主肝脏中的包封、空泡化和吞噬作用。
IF 1.9 Pub Date : 2025-08-01 DOI: 10.1093/jmicro/dfaf003
Chul Jong Yoon, Je Geun Chi, Ki Woo Kim

The cellular characteristics of the opportunistic fungal pathogen Cryptococcus species were investigated in the infected liver of an immunocompetent host using transmission electron microscopy (TEM). With no records of immunodeficiency, the 3-year-old female patient displayed a high-grade fever, lethargy and increasing jaundice. TEM analysis revealed the presence of round yeast cells in the patient's liver. These fungal yeast cells exhibited an array of cellular events in the host's liver: (i) the formation of polysaccharide capsules outside the cell wall, (ii) vacuolation in the cytoplasm and (iii) phagocytosis by Kupffer cells. The yeast cells were surrounded by electron-transparent polysaccharide capsules (approximately 5 μm thick). A series of yeast vacuolations were observed at different stages of cell development. As vacuoles occupied the cytoplasm of yeast cells, the polysaccharide capsules were thinner and more electron-dense than those of intact yeast cells. Certain yeast cells were phagocytosed by Kupffer cells through the budding scars or discontinued regions in the cell walls. These observations suggested that the patient was suffering from liver cryptococcosis. This study provides insights into the behavior of opportunistic fungal pathogens in the livers of immunocompetent patients.

利用透射电子显微镜(TEM)研究了机会真菌病原体隐球菌在免疫正常宿主感染肝脏中的细胞特征。3岁女性患者无免疫缺陷记录,表现为高热、嗜睡和日益加重的黄疸。透射电镜分析显示,患者肝脏中存在圆形酵母细胞。这些真菌酵母细胞在宿主肝脏中表现出一系列细胞事件:(i)细胞壁外形成多糖囊,(ii)细胞质空泡化,(iii) Kupffer细胞吞噬。酵母细胞被约5 μm厚的电子透明多糖胶囊包裹。在细胞发育的不同阶段观察到一系列的酵母液泡形成。由于液泡占据了酵母细胞的细胞质,多糖胶囊比完整酵母细胞更薄,电子密度更高。某些酵母细胞被库普弗细胞通过芽殖疤痕或细胞壁中断区域吞噬。这些观察提示患者患有肝隐球菌病。这项研究提供了机会性真菌病原体在免疫正常患者肝脏中的行为。
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引用次数: 0
Self-absorption effect in soft X-ray emission spectra utilized for bandgap evaluation of semiconductors. 软x射线发射光谱中的自吸收效应用于半导体带隙评价。
IF 1.9 Pub Date : 2025-08-01 DOI: 10.1093/jmicro/dfaf008
Masami Terauchi, Yohei K Sato

The self-absorption effects observed in the background intensity just above the Si L-emission spectra of Si and β-Si3N4, and the C K-emission spectra of diamond and graphite were examined. Based on comparisons with reported results, the energy positions of absorption edges - representing the bottom of conduction bands (CBs) - were assigned. The self-absorption profiles in the background intensities were consistent with previously reported data. The simultaneous observation of valence band and CB edges allowed the determination of a bandgap energy of 1.1 eV for Si, which agrees with the indirect bandgap energy of Si. For β-Si3N4, the bandgap energy was evaluated as 5.1 eV. For diamond, the edge positions were matched with reported values, and the bandgap energy was calculated to be 5.0 eV, slightly smaller than the optical gap of 5.5 eV. These observations suggest that both edges can be expected for semiconductors in principle. On the other hand, C K-emission spectrum of graphite, a semimetal also showed an edge structure, which was assigned to the self-absorption edge due to the transitions from 1s to σ* antibonding state of sp2 bonding.

在Si和β-Si3N4的Si - l发射光谱和金刚石和石墨的C - k发射光谱上方的背景强度处观察到自吸收效应。根据与报告结果的比较,分配了代表传导带(CB)底部的吸收边的能量位置。背景强度下的自吸收曲线与先前报道的数据一致。同时观察价带(VB)和价带(CB)的边缘,可以确定Si的带隙能为1.1 eV,这与Si的间接带隙能一致。β-Si3N4的能带能为5.1 eV。对于金刚石,边缘位置与报道值相匹配,计算出带隙能量为5.0 eV,略小于光隙5.5 eV。这些观测结果表明,这两种边缘观测在原则上都可以用于半导体。另一方面,半金属石墨的C - k发射光谱也表现出边缘结构,由于sp2键从1s到σ*反键态的转变,该边缘结构属于自吸收边缘。
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引用次数: 0
Disodium hydrogen phosphate facilitates the gold enhancement reaction of nanogold in the pre-embedding immunoelectron microscopy. 在预包埋免疫电镜下,磷酸氢二钠有利于纳米金的金强化反应。
IF 1.9 Pub Date : 2025-08-01 DOI: 10.1093/jmicro/dfaf009
Kana Okuma, Junji Yamaguchi, Soichiro Kakuta, Koichiro Ichimura

Immunoelectron microscopy is a technique for analyzing molecular localization at the ultrastructural level. In the pre-embedding immunoelectron microscopy, samples are immunolabeled with extremely small gold particles. Gold enhancement then enlarges the gold particles to an easily visible size. During the examination of the optimal conditions, we found that phosphate buffer accelerates the enhancement reaction. Furthermore, disodium hydrogen phosphate was identified as responsible for this effect. Disodium hydrogen phosphate enabled the gold labeling of deep regions within thick tissue samples. In conclusion, our method is useful for increasing the sensitivity, especially in the deeper region of the sample.

免疫电镜是一种在超微结构水平上分析分子定位的技术。在预包埋免疫电子显微镜中,样品用极小的金颗粒进行免疫标记。然后,黄金增强将黄金颗粒放大到容易看到的大小。在优化条件的考察中,我们发现磷酸盐缓冲液加速了强化反应。此外,磷酸氢二钠被确定为造成这种效果的原因。磷酸氢二钠能够在厚组织样品的深层区域进行金标记。总之,我们的方法有助于提高灵敏度,特别是在样品的深层区域。
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引用次数: 0
Mechanical characterization of nanomaterials revealed by the microscopic nanomechanical measurement method. 微观纳米力学测量方法揭示纳米材料的力学特性。
IF 1.9 Pub Date : 2025-08-01 DOI: 10.1093/jmicro/dfaf019
Yoshifumi Oshima, Jiaqi Zhang, Chunmeng Liu, Jiaming Liu, Keisuke Ishizuka, Toyoko Arai, Masahiko Tomitori

Mechanical properties of nanomaterials (∼10 nm or less in size) have attracted much attention for their application in nanoelectromechanical and advanced sensors. Recently, an in situ transmission electron microscope holder with a length extension resonator (LER) of quartz crystal as a force sensor, called the microscopic nanomechanical measurement (MNM) method, has been developed. It enables us to estimate not only Young's modulus but also critical shear stress for nanomaterials precisely. In this review, the principle of this novel method is introduced, and the mechanical characterization of nanomaterials revealed by this method is presented. (i) The size dependence of Young's modulus of gold nanocontacts when stretched in the [111] direction was measured, which could be explained by summing the bulk and surface Young's moduli weighted according to the ratio of internal to surface atoms. Bulk and surface Young's moduli were estimated to be 119 and 22 GPa, respectively. (ii) Young's modulus of MoS2 nanoribbons with armchair edge increased with decreasing the width, which indicated that the armchair edge bonds were stiffer than those inside the nanoribbon. (iii) By measuring the stiffness of Pt atomic chains consisting of two to five atoms, bond stiffnesses at the middle of the chain and at the connection to the base were estimated to be 25 and 23 N/m, respectively, which were higher than the bulk bond stiffness. (iv) Critical shear stress of Au nanocontacts was estimated to be 0.94 GPa by measuring the LER amplitude dependence of dissipative energy.

纳米材料(尺寸小于等于10nm)的力学性能由于其在纳米机电传感器和先进传感器中的应用而受到广泛关注。近年来,研究了一种以石英晶体长度扩展谐振器(LER)作为力传感器的原位透射电子显微镜(TEM)支架,称为微观纳米机械测量(MNM)方法。它使我们不仅可以精确地估计杨氏模量,而且可以精确地估计纳米材料的临界剪切应力。本文介绍了这种新方法的原理,并介绍了该方法所揭示的纳米材料的力学特性。(1)测量了金纳米触点在[111]方向拉伸时杨氏模量的尺寸依赖性,这可以用根据内表面原子的比例加权的体积和表面杨氏模量的总和来解释。体积和表面杨氏模量分别为119和22 GPa。(2)扶手椅边MoS2纳米带的杨氏模量随着宽度的减小而增大,扶手椅边的化学键比纳米带内部的化学键更硬。(3)通过测量2 ~ 5个原子组成的Pt原子链的刚度,估计链中部和与碱连接处的键刚度分别为25 N/m和23 N/m,高于体键刚度。(4)通过测量耗散能的LER幅值依赖性,估计金纳米触点的临界剪切应力为0.94 GPa。
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引用次数: 0
Efficient data sampling scheme to reduce acquisition time in statistical ALCHEMI. 统计炼金术中减少采集时间的有效数据采样方案。
IF 1.9 Pub Date : 2025-08-01 DOI: 10.1093/jmicro/dfaf004
Akimitsu Ishizuka, Masahiro Ohtsuka, Shunsuke Muto

The distribution of dopants in host crystals significantly influences the chemical and electronic properties of materials. Therefore, determining this distribution is crucial for optimizing material performance. The previously developed statistical ALCHEMI (St-ALCHEMI), an extension of the atom-location by channeling-enhanced microanalysis (ALCHEMI) technique, utilizes variations in electron channeling based on the beam direction relative to the crystal orientation. It statistically analyzes spectra collected across multiple beam directions. However, the total experimental time can be extensive, particularly for low dopant concentrations, where typical experiments can span several hours. In this study, we propose a scheme based on efficient sampling point selection that reduces the experimental time required while maintaining accuracy. Guidelines for selecting beam directions were derived from theoretical and experimental analyses of data redundancy. The strategies include choosing directions that exhibit greater variances in the host ionization channeling patterns and lower correlation coefficients between them. Additionally, an edge detection scheme using the dual tree complex wavelet transform, applied to electron channeling patterns, is proposed to significantly reduce measurement time. Our findings suggest that effective sampling can reduce experimental duration by at least two orders of magnitude without compromising accuracy. Implementing the proposed guidelines shortens total measurement times, minimizes electron irradiation damage and improves S/N ratio through extended data acquisition per tilt.

掺杂剂在基体晶体中的分布对材料的化学和电子性能有重要影响。因此,确定这种分布对于优化材料性能至关重要。先前开发的统计ALCHEMI (St-ALCHEMI)是通过通道增强微分析(ALCHEMI)技术对原子定位的扩展,它利用了基于相对于晶体方向的光束方向的电子通道变化。它统计地分析在多个光束方向上收集的光谱。然而,总的实验时间可能很长,特别是对于低掺杂浓度,典型的实验可能跨越几个小时。在本研究中,我们提出了一种基于有效采样点选择的方案,在保持准确性的同时减少了所需的实验时间。通过对数据冗余的理论和实验分析,导出了波束方向的选择准则。这些策略包括选择在宿主电离通道模式中表现出较大差异的方向和它们之间较低的相关系数。此外,提出了一种基于对偶树复小波变换的边缘检测方案,并将其应用于电子通道图,从而大大缩短了测量时间。我们的研究结果表明,有效的采样可以在不影响准确性的情况下将实验时间减少至少两个数量级。实施拟议的指南缩短了总测量时间,最大限度地减少了电子辐照损伤,并通过延长每次倾斜的数据采集时间提高了信噪比。
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引用次数: 0
Experimental investigation and simulation of SEM image intensity behaviors for developing thickness-controlled S/TEM lamella preparation via FIB-SEM. FIB-SEM制备厚度可控S/TEM薄片的SEM图像强度行为的实验研究与模拟。
IF 1.9 Pub Date : 2025-08-01 DOI: 10.1093/jmicro/dfaf006
Jun Uzuhashi, Yuanzhao Yao, Tadakatsu Ohkubo, Takashi Sekiguchi

High-quality thin lamellae are essential for state-of-the-art scanning transmission electron microscopy (S/TEM) analyses. While the preparation of S/TEM lamellae using focused ion beam (FIB) scanning electron microscopy has been established since the early twenty-first century, two critical factors have only recently been addressed: precise control over lamella thickness and a systematic understanding of FIB-induced damage. This study conducts an experimental investigation and simulation to explore how the intensities of backscattered and secondary electrons (BSEs and SEs, respectively) depend on lamella thickness for semiconductor (Si), insulator (Al2O3), and metallic (stainless-steel) materials. The BSE intensity shows a simple linear relationship with the lamella thickness for all materials below a certain thickness, whereas the relationship between the SE intensity and thickness is more complex. In conclusion, the BSE intensity is a reliable indicator for accurately determining lamella thickness across various materials during FIB thinning processing, while the SE intensity lacks consistency due to material and detector variability. This insight enables the integration of real-time thickness control into S/TEM lamella preparation, significantly enhancing lamella quality and reproducibility. These findings pave the way for more efficient, automated processes in high-quality S/TEM analysis, making the preparation method more reliable for a range of applications.

高质量的薄薄片是最先进的扫描透射电子显微镜(S/TEM)分析必不可少的。虽然自21世纪初以来,利用聚焦离子束(FIB)扫描电子显微镜(SEM)制备S/TEM片层已经建立起来,但两个关键因素直到最近才得到解决:精确控制片层厚度和对FIB诱导损伤的系统理解。本研究进行了实验研究和模拟,以探讨半导体(Si)、绝缘体(Al2O3)和金属(不锈钢)材料的背散射和二次电子(分别为bse和SEs)的强度如何依赖于片层厚度。在一定厚度以下的材料中,BSE强度与片层厚度呈简单的线性关系,而SE强度与片层厚度之间的关系则更为复杂。综上所述,在FIB减薄过程中,BSE强度是准确确定各种材料薄片厚度的可靠指标,而SE强度由于材料和探测器的可变性而缺乏一致性。这种洞察力使实时厚度控制集成到S/TEM薄片制备中,显着提高了薄片质量和再现性。这些发现为高质量S/TEM分析中更高效、自动化的过程铺平了道路,使制备方法在一系列应用中更加可靠。
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引用次数: 0
Nanoscale visualization of crack tips inside molten corium-concrete interaction debris using 3D-FIB-SEM with multiphase positional misalignment correction. 利用具有多相位置偏差校正功能的 3D-FIB-SEM 对熔融铈-混凝土相互作用碎片内部的裂缝尖端进行纳米级可视化。
IF 1.9 Pub Date : 2025-08-01 DOI: 10.1093/jmicro/dfaf005
Hotaka Miyata, Kenta Yoshida, Kenji Konashi, Yufeng Du, Toru Kitagaki, Takahisa Shobu, Yusuke Shimada

Characterizing molten corium-concrete interaction (MCCI) fuel debris in Fukushima reactors is essential to develop efficient methods for its removal. To enhance the accuracy of microscopic observation and focused ion beam microsampling of MCCI fuel debris, we developed a 3D focused ion beam scanning electron microscopy technique with a multiphase positional misalignment correction method. This system automatically aligns voxel positions, corrects contrast and removes artifacts from a series of over 500 scanning electron microscopy images. The multiphase positional misalignment correction method, which focuses on time-modulated contrast, considerably reduces charge-up artifacts in glass phases, enabling 3D morphological observation and analytical transmission electron microscopy of crack tips in two types of MCCI debris at the 3D/nanoscale for the first time. In the Fe-ZrSiO4-based debris, metallic balls composed of Fe, Cr2O3 and ZrO2 with dimples on the surface of about 2-58 µm in diameter were observed at the crack tips. In the (Zr, U)SiO4-based debris, a core-shell structure composed of a (U, Zr)O2 core with a diameter of about 1-5 μm and a (Zr, U)SiO4 shell with a diameter of about 2-9 μm in complex MCCI fuel debris at the crack tips.

表征福岛反应堆熔融核混凝土相互作用(MCCI)燃料碎片对开发有效的清除方法至关重要。为了提高聚焦离子束(FIB)对MCCI燃料碎片的显微观察和显微采样精度,提出了一种带有多相位置错位(MPPM)校正方法的三维FIB扫描电子显微镜(SEM)技术。该系统自动对齐体素位置,校正对比度,并从一系列超过500 SEM图像中去除伪影。MPPM校正方法侧重于时间调制对比度,大大减少了玻璃相中的充电伪影,首次在3D/纳米尺度上对两种MCCI碎屑的裂纹尖端进行了三维形态观察和透射电子显微镜分析。在Fe- zrsio4基碎屑中,在裂纹尖端处观察到由Fe、Cr2O3和ZrO2组成的金属球,表面上有直径约为2 ~ 58µm的韧窝。在(Zr, U)SiO4基碎屑中,在裂纹尖端的复杂熔融堆芯-混凝土相互作用燃料碎屑中,形成了由直径约为1 ~ 5 μm的(U, Zr)O2芯和直径约为2 ~ 9 μm的(Zr, U)SiO4壳组成的核壳结构。
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引用次数: 0
Ultra-low accelerating voltage scanning electron microscopy with multiple imaging detectors-imaging and analysis at the 'sweet spot'†. 超低加速电压扫描电子显微镜与多成像探测器。
IF 1.9 Pub Date : 2025-08-01 DOI: 10.1093/jmicro/dfaf022
Kaoru Sato, Masayasu Nagoshi, Takaya Nakamura, Hiroshi Imoto

This paper describes the positioning of the ultra-low accelerating voltage scanning electron microscope (ULV-SEM) equipped with multiple imaging detectors in the history of SEM development. ULV-SEM provides rich information once the user finds the 'sweet spot' for both secondary electron and backscattered electron images based on an understanding of the signal acceptance of the instrument. Use of multiple imaging detectors allows acquisition of various images with a single scan. X-ray microanalysis under the same experimental conditions as the observation 'sweet spot' has become possible with a windowless X-ray spectrometer optimized for use at a short working distance.

本文介绍了配备多成像探测器的超低加速电压扫描电镜(ULV-SEM)在扫描电镜发展史上的定位。一旦用户找到二次电子和背散射电子图像的“最佳点”,基于对仪器信号接受度的理解,ULV-SEM提供了丰富的信息。使用多个成像探测器可以通过一次扫描获取各种图像。在与观测“甜点”相同的实验条件下,通过优化用于短工作距离的无窗x射线光谱仪,可以进行x射线微分析。
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引用次数: 0
Physical basics of scanning electron microscopy in volume electron microscopy. 体积电子显微镜中扫描电子显微镜的物理基础。
Pub Date : 2025-06-26 DOI: 10.1093/jmicro/dfaf016
Mitsuo Suga, Yusuke Hirabayashi

Volume electron microscopy (vEM) has become a widely adopted technique for acquiring three-dimensional structural information of biological specimens. In addition to the traditional use of transmission electron microscopy, recent advances in the resolution of scanning electron microscopy (SEM) made it suitable for vEM application. Currently, various types of SEM with different advantages have been utilized. For selecting the appropriate type of SEM to obtain optimal vEM images for the purpose of individual research, it is important to understand the physics underlying each SEM technology. This article aims to explain the physics for signal electron generation, various objective lens configurations and detection systems, employed in SEM to enhance high-resolution imaging and improve signal detection conditions.

体积电子显微镜(vEM)已成为一种广泛采用的获取生物标本三维结构信息的技术。除了传统的透射电子显微镜(TEM)外,扫描电子显微镜(SEM)分辨率的最新进展使其适合于vEM应用。目前,各种类型的SEM具有不同的优点。为了选择合适的SEM类型来获得最佳的vEM图像,了解每种SEM技术背后的物理原理是很重要的。本文旨在解释信号电子产生的物理原理,各种物镜配置,以及用于扫描电镜的检测系统,以提高高分辨率成像和改善信号检测条件。
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引用次数: 0
Bioimaging and image analysis at scale. 大规模生物成像和图像分析。
Pub Date : 2025-06-26 DOI: 10.1093/jmicro/dfaf026
Yusuke Hirabayashi, Shuichi Onami
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引用次数: 0
期刊
Microscopy (Oxford, England)
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