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Exploring phenotypic variability in quantitative and qualitative traits in F2 population of local red rice 地方红米F2群体数量性状和质量性状的表型变异研究
Pub Date : 2025-10-21 DOI: 10.1016/j.repbre.2025.10.001
Masud Perves , Abu Sayeed Md Hasibuzzaman , Rashadul Hasan , Md Mosanna Habib Emon , Maria Chowdhory , Md Shamiul Haque , Arif Hasan , Istiak Ahamad , Sakina Khanam , Shamsun Nahar Begum
Red rice is nutrient-dense, yet local varieties display suboptimal ideotypes characterized by prolonged growth duration, susceptibility to lodging, and open panicles with reduced grain count, constraining its yield. We hybridized a well-adapted, high-yielding variety, Binadhan-17, with a red rice mutant (derived from local red rice) by cross and reciprocal cross, intending to uncover changes in quantitative and qualitative traits in the F2 population. Histograms and descriptive analysis revealed the highest variation in key yield components, with the genotypic coefficient of variation (GCV) close to the phenotypic coefficient of variation (PCV), indicating genetic control over the environment. Variation in Genetic Advance (GA) and Genetic Advance as a Percent of the Mean (GAM) highlights the traits against which selection will be crucial. Days to maturity exhibited a significant negative correlation with grain-related and panicle traits in the cross-population, while plant height positively correlated with effective tillers, panicle length, and filled grains in both populations. The variation in the Rc gene, which governs color, was validated by the SSR marker RM180, effectively distinguishing the red pericarp group from the white group. This is the first analysis integrating Rc gene validation with reciprocal F2 populations in red rice × high-yielding variety crosses, revealing substantial variation in plant architecture and panicle-related traits and offering significant scope for selection in subsequent breeding cycles.
红米营养丰富,但地方品种表现出生长期长、易倒伏、穗开、粒数少等不理想的理想型,制约了其产量。我们将适应性强的高产品种Binadhan-17与一个红米突变体(源自当地红米)进行杂交和倒交,旨在揭示F2群体中数量和质量性状的变化。直方图和描述性分析显示,主要产量成分变异最大,基因型变异系数(GCV)接近表型变异系数(PCV),表明遗传对环境有控制作用。遗传进步(GA)和遗传进步占平均百分比(GAM)的变异突出了选择对其至关重要的性状。在杂交群体中,成熟日数与籽粒相关性状和穗部性状呈显著负相关,而株高与有效分蘖、穗部长度和实粒呈显著正相关。通过SSR标记RM180验证了控制果皮颜色的Rc基因的变异,有效地区分了红色果皮群体和白色果皮群体。这是第一次将Rc基因验证与红米×高产品种杂交的F2互易群体相结合的分析,揭示了植株结构和穗部相关性状的实质性变化,并为后续育种周期的选择提供了重要的空间。
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引用次数: 0
Reproductive biology, hormonal induction efficiency, and larval rearing success of Amblypharyngodon mola (Hamilton, 1822) 双咽鱼的生殖生物学、激素诱导效率和幼虫饲养成功率(Hamilton, 1822)
Pub Date : 2025-10-10 DOI: 10.1016/j.repbre.2025.09.004
Md Sharif Mia , Shyamal Kumar Paul , K.M. Mahfujur Rahman , M. Maksud Alam , Tania Perven , Debasish Saha , Bhakta Supratim Sarker , Srijan Sarker
The status of Amblypharyngodon mola in Bangladesh is categorized as least concern. This experiment aims to examine the breeding biology and produce fry through induced breeding of the species. To achieve, we measured the gonadosomatic index (GSI), fecundity, and sex ratio throughout the year. It was designed 12 treatments (T1-T12) with CPH, hCG, and ovaprim and one control (T0: without hormone dose) with four doses of each hormone and maintaining a fixed sex ratio of 1:1 (M:F). For the evaluation of induced breeding, measured latency time and hatching periods, fertilization, hatching, and survival rates and monitored the water temperature, pH, dissolved oxygen (DO), and total dissolved solids (TDS) of the supplied water. The survival rate of the larvae in cages was assessed after 30 days of rearing under four different conditions, i.e., the control group (without supplementary feed), LR1 (mustard oil cake), LR2 (egg custard), and LR3 (commercial feed powder). Additionally, water quality parameters were evaluated during this period. The highest GSI and absolute fecundity were recorded in mid-October (21.86 ± 2.87 % and 12.462 ± 1639 eggs/female, respectively), while the lowest (3.23 ± 0.41 % and 978 ± 283 eggs/female) were observed in late January. The sex ratio (F:M) ranged from 1.23:1 to 2.0:1 (average of 1.52:1). CPH had a shorter latency duration (6–7 h) than hCG (7–8 h) and ovaprim (8–9 h). Different treatments had 16–18 h hatching periods. The highest rates of fertilization, hatching, and survival were 75.83 ± 9.30, 76.06 ± 7.95 %, and 66.74 ± 4.12 %, respectively, with treatment T2 (CPH 6 mg/kg female and 3 mg/kg male). After 30 days, the highest survival rate (56 ± 6.32 %) was recorded in treatment LR2, followed by 48 ± 5.93 % (LR3), 41 ± 7.23 % (LR1), and 32 ± 6.87 % (control). Physicochemical parameters of water in incubator and cage were optimal. These findings show that fish farmers can benefit from bulk fry production for culture, protecting this species and promoting biodiversity.
孟加拉国的弱咽鱼的状况被归类为最不受关注的。本试验旨在通过对该鱼种的诱导育种,研究该鱼种的育种生物学,并进行鱼苗生产。为了实现这一目标,我们测量了全年的性腺指数(GSI)、繁殖力和性别比例。设计了12组(T1-T12)使用CPH、hCG和ovaprim的治疗组和一个对照组(T0:不使用激素剂量),每种激素使用4个剂量,并保持固定的性别比例1:1 (M:F)。为评价诱导繁殖,测定了潜伏期、孵化期、受精率、孵化率和成活率,并监测了供水的水温、pH、溶解氧(DO)和总溶解固形物(TDS)。在对照组(不添加饲料)、LR1(芥菜油饼)、LR2(蛋羹)和LR3(商品饲料粉)4种不同条件下,饲养30 d后对笼内幼虫存活率进行评估。此外,还对这一时期的水质参数进行了评价。GSI和绝对繁殖力在10月中旬最高(分别为21.86±2.87%和12.462±1639个卵/只),在1月下旬最低(3.23±0.41%和978±283个卵/只)。性别比(F:M)在1.23:1至2.0:1之间,平均为1.52:1。CPH的潜伏期(6 ~ 7 h)短于hCG (7 ~ 8 h)和ovaprim (8 ~ 9 h)。不同处理的孵化期为16 ~ 18 h。当CPH浓度为T2(雌CPH浓度为6 mg/kg,雄CPH浓度为3 mg/kg)时,受精率、孵化率和成活率分别为75.83±9.30%、76.06±7.95%和66.74±4.12%。30 d后,LR2组存活率最高(56±6.32%),其次为LR3组(48±5.93%)、LR1组(41±7.23%)和对照组(32±6.87%)。培养箱和笼中水的理化参数最优。这些发现表明,养鱼户可以从养殖、保护该物种和促进生物多样性的大量鱼苗生产中受益。
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引用次数: 0
Chromosomal localization and variation analysis of 5S rDNA in autotriploid Carassius auratus 自三倍体鲫鱼5S rDNA染色体定位及变异分析
Pub Date : 2025-10-02 DOI: 10.1016/j.repbre.2025.09.003
Kun Zhang , Yuxin Zhang , Xu Huang , Chongqing Wang , Xidan Xu , Xiaowei Xu , Li Yang , Tingting Yu , Xiang Luo , Qingwen Xiao , Yue Zhou , Qinbo Qin
Polyploidization can induce a flurry of genetic events and plays an important role in speciation. In this study, we comparatively analyzed the molecular organization, chromosomal locus in natural autotriploid (3nCC, 3n = 150) and artificial autotriploid gynogenetic (3nG, 3n = 150) Carassius auratus, diploid Carassius auratus (2nCC, 2n = 100) and Carassius auratus red var. (RCC, 2n = 100). Three distinct 5S rDNA sequence types were identified across 3nCC, 3nG 2nCC and RCC. Among these, the sequences in 3nG and 3nCC matched perfectly with those in RCC and 2nCC, respectively. The NTS regions of 5S rDNA in 3nG and 3nCC showed significant base variations compared to RCC and 2nCC, separately. FISH with 5S rDNA probe indicated that the expected number of maternal chromosomal loci was found in both 3nCC and 3nG. These observations indicated that they provide theoretical support for the study of the evolutionary modes and characteristics of rDNA in vertebrates.
多倍体化可以引起一系列遗传事件,并在物种形成中起重要作用。本研究比较分析了天然自三倍体(3nCC, 3n = 150)和人工自三倍体雌体(3nG, 3n = 150)、二倍体(2nCC, 2n = 100)和红鲫(RCC, 2n = 100)的分子结构和染色体位点。在3nCC、3nG、2nCC和RCC中鉴定出三种不同的5S rDNA序列类型。其中,3nG和3nCC的序列分别与RCC和2nCC的序列完全匹配。与RCC和2nCC相比,3nG和3nCC的5S rDNA NTS区分别表现出显著的碱基差异。采用5S rDNA探针的FISH检测结果显示,在3nCC和3nG中均发现了预期数量的母体染色体位点。这些结果为研究脊椎动物rDNA的进化模式和特征提供了理论支持。
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引用次数: 0
Comprehensive screening and evaluation of diverse Mediterranean barley genotypes for salt tolerance using multiple agro-morphological and tolerance indices criteria 利用多种农业形态和耐盐指标综合筛选和评价地中海大麦耐盐基因型
Pub Date : 2025-09-25 DOI: 10.1016/j.repbre.2025.09.002
Said Bouhraoua , Mohamed Ferioun , Abdelali Boussakouran , Douae Belahcen , Khalil Hammani , Said Louahlia
Salinity tolerance in barley is essential for food security and as a model for crop resilience to climate change. Twenty-three barley genotypes were evaluated under non-saline (0 dS/m) and saline (12 dS/m) irrigation regimes. To evaluate the salinity resilience of various barley genotypes, grain yield was assessed under both salinity treatment. Eight tolerance indices were calculated to comprehensively characterize performance: Salinity Susceptibility Index (SSI), Tolerance Index (TOL), Stress Tolerance Index (STI), Harmonic Mean Productivity (HMP), Geometric Mean (GM), Geometric Mean Productivity (GMP), Yield Stability Index (YSI), and Mean Productivity (MP). Analysis of variance showed genotype variation and showed that salinity had a considerable impact on agro-morphological parameters. Grain yield shown significant correlations with GMP, STI, MP, and HMP in non-stress situations, indicating that these measurements correctly estimate high performance. Principal component analysis (PCA) and heatmap visualization identified four genotypes ‘Assiya’, ‘Laanaceur’, ‘Tombari’, and ‘Giza130’ as top performers under non-saline irrigation, displaying elevated values across these indices. Under saline stress (Ys), grain yield correlated positively with Yield Index (YI), YSI, and GM, highlighting their relevance for stress resilience. Three genotypes ‘Massine’, ‘Tozeur’, and ‘Giza125’ exhibited the highest yields and index scores under salinity, suggesting superior tolerance. In contrast, ‘Manal’, ‘Amira’, ‘Elarich’, ‘Rihane’, and ‘Temellalet’ were more sensitive to salt stress. Overall, STI, MP, HMP, and GMP demonstrated consistent, significant positive associations with grain yield across both irrigation treatments, underscoring their utility as robust selection criteria. These findings support using these indices in breeding programs targeting Mediterranean barley genotypes with enhanced salinity tolerance.
大麦的耐盐性对粮食安全至关重要,也是作物抵御气候变化能力的典范。在无盐水(0 dS/m)和盐水(12 dS/m)灌溉条件下,对23种大麦基因型进行了评价。为了评价不同基因型大麦的耐盐性,对两种盐处理下的籽粒产量进行了评估。计算了8个耐受性指标:盐敏感性指数(SSI)、耐受性指数(TOL)、耐应力指数(STI)、调和平均生产率(HMP)、几何平均生产率(GM)、几何平均生产率(GMP)、产量稳定性指数(YSI)和平均生产率(MP)。方差分析显示基因型差异,盐度对农业形态参数有较大影响。在非胁迫情况下,粮食产量与GMP、STI、MP和HMP显著相关,表明这些测量正确地估计了高产能。主成分分析(PCA)和热图可视化确定了四个基因型“Assiya”、“Laanaceur”、“Tombari”和“Giza130”在非盐水灌溉下表现最佳,这些指数都显示出较高的值。在盐胁迫(Ys)条件下,粮食产量与产量指数(YI)、YSI和GM呈正相关,表明它们与胁迫恢复能力相关。3个基因型‘masine’、‘Tozeur’和‘Giza125’在盐度条件下表现出最高的产量和指数得分,表明具有较强的耐受性。相比之下,“Manal”、“Amira”、“Elarich”、“Rihane”和“Temellalet”对盐胁迫更敏感。总的来说,STI、MP、HMP和GMP在两种灌溉处理中都与粮食产量表现出一致的、显著的正相关,强调了它们作为强有力的选择标准的效用。这些发现支持将这些指标用于地中海大麦耐盐性增强基因型的育种计划。
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引用次数: 0
Generation of fast-growth grass carp by mutation of mstnb via CRISPR/Cas9 system 利用CRISPR/Cas9系统突变mstnb生成快速生长草鱼
Pub Date : 2025-09-19 DOI: 10.1016/j.repbre.2025.09.001
Pengfei Zhao , Yuan Shen , Jiaxiang Cheng , Liang Zhang , Zeting Qu , Wenbo Li , Xingyong Liu , Minghui Li , Shengfei Dai
Myostatin (mstn) is a highly conserved negative regulator of myogenesis and myofiber growth in vertebrates. In recent years, the CRISPR/Cas9 (Clustered Regularly Interspaced Short Palindromic Repeats) system has been widely used for genetic breeding in aquaculture. Targeted disruption of mstn in various teleost species has led to enhanced growth traits. In this study, two mstn paralogs, designated mstna and mstnb, were identified in grass carp (Ctenopharyngodon idella). Tissue distribution analysis using RT-PCR revealed that mstnb, but not mstna, was expressed in muscle tissue, suggesting a potential role for the mstnb gene in grass carp muscle growth. To investigate the role of mstnb in skeletal muscle growth, we adopted CRISPR/Cas9 to disrupt the mstnb gene by co-injecting Cas9 protein and sgRNA into one-cell stage embryos. Approximately 85 % of injected F0 individuals carried mutations at the mstnb target site, including various frameshift indel mutations. Compared to their wild-type counterparts, the mstnb F0 mutants showed significantly increased body weight and length. Quantitative real-time PCR analysis confirmed a significant reduction in mstnb expression in the F0 mutants. Additionally, two growth-related genes, myod1 and vegfba, exhibited significant upregulation in mutant muscle tissue. Histological examination revealed no significant difference in the thickness of individual muscle fibers between WT siblings and the F0 mutants. However, a significant increase in the total number of muscle fibers was observed in the mstnb F0 mutants. We successfully generated mstnb mutants with enhanced muscle growth, which may promote grass carp production in aquaculture practice. Overall, our study provided a valuable resource for the genetic breeding of grass carp.
肌生长抑制素(mstn)是脊椎动物肌肉生成和肌纤维生长的高度保守的负调控因子。近年来,CRISPR/Cas9 (Clustered Regularly Interspaced Short Palindromic Repeats)系统被广泛应用于水产养殖的遗传育种。在各种硬骨鱼物种中,有针对性地破坏mstn导致了生长性状的增强。本研究在草鱼(Ctenopharyngodon idella)中鉴定了两个mstn的类似物mstna和mstnb。组织分布分析显示,肌肉组织中表达mstnb,而非mstna,提示mstnb基因可能在草鱼肌肉生长中发挥作用。为了研究mstnb在骨骼肌生长中的作用,我们采用CRISPR/Cas9方法,将Cas9蛋白和sgRNA共注入单细胞期胚胎,破坏mstnb基因。大约85%的注射F0个体在mstnb靶位点携带突变,包括各种移码indel突变。与野生型相比,mstnb F0突变体的体重和长度显著增加。实时荧光定量PCR分析证实,F0突变体中mstnb的表达显著降低。此外,两个生长相关基因myod1和vegfba在突变的肌肉组织中表现出显著的上调。组织学检查显示,在WT兄弟姐妹和F0突变体之间,单个肌纤维的厚度没有显著差异。然而,在mstnb F0突变体中观察到肌纤维总数显著增加。我们成功地获得了肌肉生长增强的mstnb突变体,这可能在养殖实践中促进草鱼的生产。本研究为草鱼遗传育种提供了宝贵的资源。
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引用次数: 0
From bench to bedside: Mouse models in translating infertility research to clinical applications in assisted reproduction 从实验室到床边:小鼠模型在将不育研究转化为辅助生殖临床应用中的应用
Pub Date : 2025-09-01 DOI: 10.1016/j.repbre.2025.08.003
Pallav Sengupta , Sulagna Dutta
The use of animal models, principally mice, has been instrumental in advancing our understanding of reproductive biology. Mice serve as a powerful tool due to their genetic and physiological similarities to humans, short reproductive cycles, and ease of genetic manipulation. This review highlights the pivotal role of mouse models in reproductive research, emphasizing the genetic approaches used to elucidate gene functions. Reverse genetics, involving gene expression modifications followed by phenotypic analysis, and forward genetics, which starts with phenotypic observations to identify genetic causes, are key methodologies discussed. Mouse models have provided significant insights into various aspects of reproduction, including spermatogenesis, oogenesis, hormonal regulation, and the impact of specific genes on fertility. Notable examples include the use of knockout and transgenic mice to study gene functions related to fertility and the development of models for studying human reproductive disorders such as polycystic ovarian syndrome and endometriosis. Additionally, the review addresses the importance of mouse models in assisted reproductive technologies (ART), exploring their contributions to understanding ART-induced epigenetic changes and long-term outcomes. This comprehensive examination underscores the indispensable role of mice in reproductive biology research, paving the way for translating these findings into clinical applications for human infertility.
动物模型的使用,主要是小鼠,在促进我们对生殖生物学的理解方面发挥了重要作用。由于小鼠在遗传和生理上与人类相似,生殖周期短,易于基因操作,因此它们是一种强大的工具。本文综述了小鼠模型在生殖研究中的关键作用,强调了用于阐明基因功能的遗传方法。反向遗传学,包括基因表达修饰,然后进行表型分析,正向遗传学,从表型观察开始确定遗传原因,是讨论的关键方法。小鼠模型为生殖的各个方面提供了重要的见解,包括精子发生、卵子发生、激素调节以及特定基因对生育能力的影响。值得注意的例子包括使用基因敲除和转基因小鼠来研究与生育有关的基因功能,以及开发用于研究人类生殖疾病(如多囊卵巢综合征和子宫内膜异位症)的模型。此外,本文还讨论了小鼠模型在辅助生殖技术(ART)中的重要性,探讨了它们对理解ART诱导的表观遗传变化和长期结果的贡献。这项全面的研究强调了小鼠在生殖生物学研究中不可或缺的作用,为将这些发现转化为人类不育的临床应用铺平了道路。
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引用次数: 0
Captive breeding practices and insights on four indigenous Betta species of Sarawak 砂拉越四种本地斗鱼的圈养养殖实践和见解
Pub Date : 2025-08-28 DOI: 10.1016/j.repbre.2025.08.002
Ahmad Syafiq Ahmad Nasir , Mohd Armeen Zulkanaini , Jeffery Mahmud , Ruhana Hassan , Mohamad Faizul Mat Isa , Samsur Mohamad
Sarawak, located on the island of Borneo, is home to several indigenous Betta species, many of which face threats from habitat degradation. Despite their ecological and ornamental significance, limited information exists on their captive breeding potential. This study investigated the reproductive behavior and larval development of four native Betta species (Betta brownorum, Betta ibanorum, Betta macrostoma, and Betta taeniata) under controlled conditions. A total of 46 wild specimens were collected from four locations across Sarawak and subjected to species-specific breeding trials in aquaria. B. brownorum, a bubble-nester, exhibited nest-building and egg deposition behavior, with hatching observed within 3–4 days. In contrast, the three mouthbrooding species exhibited paternal incubation, which lasted 3–4 weeks. Larval development was monitored over time, showing steady increases in total length and distinct developmental stages were documented. These findings confirm the feasibility of captive breeding in all four species and highlight differences in reproductive strategy and larval growth patterns. The outcomes provide valuable baseline data for conservation planning and the development of ex-situ breeding programs for Sarawak's threatened Betta species.
沙捞越位于婆罗洲岛上,是几种本地斗鱼物种的家园,其中许多物种面临栖息地退化的威胁。尽管它们具有生态和观赏意义,但圈养繁殖潜力的信息有限。本研究在控制条件下,研究了褐鳟(Betta brownorum)、ibanorum (Betta ibanorum)、大口斗鱼(Betta macrostoma)和taeniata (Betta taeniata)四种本地斗鱼的繁殖行为和幼虫发育。在砂拉越的四个地点共收集了46个野生标本,并在水族馆进行了特定物种的繁殖试验。泡状巢鸟褐背蜂表现出造巢和产卵行为,3 ~ 4 d内孵化。而三种口孵品种均表现为雄代孵化,潜伏期为3 ~ 4周。随着时间的推移,对幼虫的发育进行了监测,显示出总长度稳步增长,并记录了不同的发育阶段。这些发现证实了圈养繁殖在所有四个物种中的可行性,并突出了繁殖策略和幼虫生长模式的差异。研究结果为砂拉越受威胁的斗鱼物种的保护规划和迁地繁殖计划的发展提供了有价值的基线数据。
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引用次数: 0
Evaluation of interspecific crossing line x tester (C. annuum and C. frutescens) on chili fruit based on image processing and multivariate analysis 基于图像处理和多变量分析的辣椒果实种间杂交系x检测方法评价
Pub Date : 2025-08-27 DOI: 10.1016/j.repbre.2025.08.001
Muhammad Fuad Anshori , Abd Haris Bahrun , Nuniek Widiayani , Dwi Lestari , Reynaldi Laurenze , Muhammad Faried , Nirwansyah Amier , Nurafika Nurafika
Developing interspecific crosses of chili peppers is one way to expand the range expected by the market. Common interspecific crosses were Capsicum annum and Capsicum frutescens. However, systematic and detailed evaluations of the effects of these crosses on fruit quality have rarely been conducted. Therefore, the objectives of this study were (1) to determine effective evaluation criteria for chili fruit from interspecific crosses of C. annuum and C. frutescens, and (2) to identify the effect of interspecific crosses on for offspring based on evaluation criteria. This study was conducted in two stages. The first stage was a reciprocal line x tester cross between C. frutescens (Sonar, Bara, Bhaskara) and C. annuum (Pilar and Igo). The second stage involved evaluation of the line × tester hybrids. The evaluation was conducted in a randomized complete block design with genotypes, 12 interspecies hybrids, and five elders as the main factors, repeated three times. Observations focused on five agronomic characters, and 14 image-processing characters were systematically analyzed using multivariate analysis. Based on the results of this study, the characteristics of HUE (H2 = 68.18 %), fruit area (H2 = 84.85 %), and fruit weight (H2 = 50.00 %) can be used as criteria for assessing the crossing potential between the two species. These characters demonstrate that C. frutescens influences the fruit agronomic potential of the hybrid progeny compared to C. annuum, both as a line and tester. Even so, HUE can distinguish between the influence of the two species when acting as females and males. Therefore, the HUE is recommended as an adequate colorimetric criterion for assessing the interaction potential of the hybrid progeny of the two species.
发展辣椒种间杂交是扩大市场预期范围的一种途径。常见的种间杂交是辣椒(Capsicum annum)和辣椒(Capsicum frutescens)。然而,对这些杂交品种对果实品质的影响却很少进行系统和详细的评价。因此,本研究的目的是:(1)确定种间杂交对辣椒果实的有效评价标准;(2)根据评价标准确定种间杂交对后代的影响。本研究分两个阶段进行。第一阶段是C. frutescens (Sonar、Bara、Bhaskara)与C. annuum (Pilar和Igo)的互交x线测试。第二阶段涉及对系×试验杂交种的评价。采用随机完全区组设计,以基因型、12个种间杂交种、5个长辈为主要因素进行评价,重复3次。采用多变量分析对5个农艺性状和14个图像处理性状进行系统分析。根据本研究结果,色相(H2 = 68.18%)、果面积(H2 = 84.85%)和果重(H2 = 50.00%)特征可作为评价两种杂交潜力的标准。这些性状表明,无论是作为品系还是作为试验品系,果参对杂交后代的果实农艺潜力都有影响。即便如此,HUE还是可以区分出这两个物种在扮演雌性和雄性角色时的影响。因此,色相被推荐为评估两个物种杂交后代相互作用潜力的适当比色标准。
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引用次数: 0
A transcriptome-based analysis reveals the role of Hedgehog signaling in regulating slow muscle autophagy in Chinese perch 基于转录组的分析揭示了刺猬信号在调节中华鲈鱼缓慢肌肉自噬中的作用
Pub Date : 2025-07-17 DOI: 10.1016/j.repbre.2025.07.001
Yangyang Meng, Wei Zeng, Xin Liao, Lingtao Nie, Junzhao Wang, Xin Zhu, Jianshe Zhang, Wuying Chu
As one of the structural tissues of fish skeletal muscles, slow muscle plays an important role in physiological and metabolic activities. The Hedgehog (Hh) signaling pathway has been reported to be involved in regulating the development and metabolism of slow muscle in fish. The underlying molecular mechanisms by which the Hedgehog (Hh) signaling pathway governs metabolic homeostasis within the slow muscle tissue of fish remain an enigma. In order to reveal the functional regulatory role of the Hh signaling pathway in the slow muscle of Chinese perch (Siniperca chuatsi), Cyclopamine was used to inhibit the Hh signaling pathway and Illumina sequencing technology was employed to explore the effect of inhibiting the Hh signaling pathway on slow muscle transcriptomes. In this study, a total of 666 differentially expressed genes (DEGs) were obtained between the control and Cyclopamine-treated groups. Functional enrichment analyses showed that the DEGs are mainly enriched in signaling pathways related to autophagy and metabolism, such as the mTOR signaling pathway, the autophagy pathway and the FoxO signaling pathway. The Western blotting analysis showed that the autophagy levels increased after treatment with Cyclopamine. Transmission electron microscopy results showed that the number of autophagic lysosomes was reduced in the Cyclopamine-treated group. The above results suggest that the Hh signaling pathway may play a key role in the regulation of autophagy and metabolism in slow muscle of Chinese perch, thus ensuring normal physiological activities in their muscles. In addition, the present study provides a direction for further elucidating the role of Hh signaling pathway in regulating the dynamic balance of metabolism in the slow muscle of Chinese perch.
慢肌是鱼类骨骼肌的结构组织之一,在生理和代谢活动中起着重要作用。据报道,Hedgehog (Hh)信号通路参与调节鱼类慢肌的发育和代谢。Hedgehog (Hh)信号通路控制鱼类慢肌肉组织内代谢稳态的潜在分子机制仍然是一个谜。为了揭示Hh信号通路在中华鲈鱼慢肌中的功能调控作用,我们利用环巴胺抑制Hh信号通路,并利用Illumina测序技术探索抑制Hh信号通路对慢肌转录组的影响。在本研究中,在对照组和环胺处理组之间共获得666个差异表达基因(deg)。功能富集分析显示,deg主要富集于与自噬和代谢相关的信号通路,如mTOR信号通路、自噬通路和FoxO信号通路。Western blotting分析显示,环巴胺治疗后细胞自噬水平升高。透射电镜结果显示,环胺处理组自噬溶酶体数量减少。上述结果提示Hh信号通路可能在调节中华鲈鱼慢肌的自噬和代谢中发挥关键作用,从而保证其肌肉的正常生理活动。此外,本研究为进一步阐明Hh信号通路在调节中华鲈鱼慢肌代谢动态平衡中的作用提供了方向。
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引用次数: 0
Levels of serum and seminal fluid RANKL and osteoprotegerin in differentiating oligozoospermic and idiopathic infertile males: a case-control study 血清和精液RANKL和骨保护素水平在鉴别少精子症和特发性不育男性中的作用:一项病例对照研究
Pub Date : 2025-07-14 DOI: 10.1016/j.repbre.2025.05.002
Osamah A. Layih, Basil O. Saleh
Infertility is defined as the inability to conceive after one year of unprotected intercourse, with male factors accounting to about 50 % of cases. The study aimed to investigate the potential role of receptor activator of nuclear factor kappa-B ligand (RANKL) and osteoprotegerin (OPG) in differentiating between oligozoospemia and idiopathic subtypes of male infertility. A case-control study was conducted at the infertility center of Al-Batool Teaching Hospital in Diyala Governorate, Iraq, by the Department of Biochemistry, College of Medicine, University of Baghdad between April 2024 and January 2025. The study included 82 males, aged 20–55 years, divided into three groups based on seminal fluid analysis: 30 normozoospermic males (control group), 25 oligozoospermia patients, and 27 patients with idiopathic infertility. Serum and seminal fluid levels of (RANKL) and (OPG) were measured using enzyme-linked immunosorbent assays. Serum RANKL levels were significantly elevated in oligozoospermic patients (297.93 ± 85.99 pg/mL) compared to idiopathic infertility (147.16 ± 49.58 pg/mL) and normozoospermic controls (116.29 ± 20.95 pg/mL; p < 0.001). A similar pattern was observed in seminal RANKL levels, with oligozoospermia patients showing higher levels (402.39 ± 132.79 pg/mL) than controls (175.84 ± 24.46 pg/mL) (p < 0.001). In contrast, serum (OPG) levels were highest in normozoospermic controls (3.45 ± 0.98 ng/mL) and lowest in oligozoospermic patients (1.29 ± 0.56 ng/mL; p < 0.001). Seminal OPG exhibited the most pronounced differences, with controls (at 2.88 ± 0.89 ng/mL) compared to (1.00 ± 0.45 ng/mL) in oligozoospermic patients (p < 0.001). Reservoir operating characteristics (ROC) analysis demonstrated exceptional diagnostic utility for serum RANKL Area under the curve (AUC: 0.999) and OPG (AUC: 0.980) in differentiating oligozoospermia from normozoospermia. Serum RANKL showed 100 % sensitivity and 96.67 % specificity at a threshold >148.1 pg/mL, while OPG showed 100 % sensitivity and 92 % specificity at 2.2 ng/mL. For distinguishing idiopathic cases from normozoospermia, serum RANKL and OPG showed moderate diagnostic value (AUC 0.683 and 0.637). Seminal fluid measurements of both markers demonstrated moderate to excellent diagnostic performance for both comparisons. In conclusion, serum RANKL and OPG levels may serve as valuable biomarkers for differentiate between subtypes of male infertility.
不孕症的定义是在无保护的性交一年后无法怀孕,其中男性因素约占50%。本研究旨在探讨核因子κ b配体受体激活因子(RANKL)和骨保护素(OPG)在鉴别少精子症和特发性男性不育症亚型中的潜在作用。巴格达大学医学院生物化学系于2024年4月至2025年1月在伊拉克迪亚拉省Al-Batool教学医院的不孕不育中心进行了一项病例对照研究。该研究纳入了82名年龄在20-55岁的男性,根据精液分析分为三组:30名正常精子患者(对照组),25名少精子患者和27名特发性不育症患者。采用酶联免疫吸附法测定血清和精液中RANKL和OPG水平。少精子患者血清RANKL水平(297.93±85.99 pg/mL)显著高于特发性不育症(147.16±49.58 pg/mL)和正常精子对照组(116.29±20.95 pg/mL;p & lt;0.001)。在精液RANKL水平中也观察到类似的模式,少精症患者的RANKL水平(402.39±132.79 pg/mL)高于对照组(175.84±24.46 pg/mL) (p <;0.001)。相比之下,正常精子对照组血清(OPG)水平最高(3.45±0.98 ng/mL),少精子患者最低(1.29±0.56 ng/mL;p & lt;0.001)。精子OPG表现出最显著的差异,与对照组(2.88±0.89 ng/mL)相比,少精子患者(1.00±0.45 ng/mL) (p <;0.001)。ROC分析显示,血清RANKL曲线下面积(AUC: 0.999)和OPG (AUC: 0.980)在区分少精症和正常精子症方面具有卓越的诊断价值。血清RANKL在阈值为148.1 pg/mL时灵敏度为100%,特异性为96.67%,而OPG在≤2.2 ng/mL时灵敏度为100%,特异性为92%。血清RANKL和OPG对特发性病例与正常精子症的鉴别诊断价值中等(AUC分别为0.683和0.637)。精液中两种标记物的测量在两种比较中均表现出中等至优异的诊断性能。综上所述,血清RANKL和OPG水平可作为区分男性不育症亚型的有价值的生物标志物。
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Reproduction and breeding
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