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Biophysical characterization of spCas9 binding and cleavage using real-time electronic biosensors. 利用实时电子生物传感器研究spCas9结合和裂解的生物物理特性。
IF 4.1 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2026-03-09 DOI: 10.1039/d5sd00227c
Deependra Kumar Ban, Kshama Parate, Deepta Bharadwaj, Austin Wong, Lorelai Schoch, Kenneth Visk, Kiana Aran

CRISPR-Cas9 enables curative genome editing but requires precise control of target recognition, particularly when single-nucleotide polymorphisms (SNPs) influence specificity. Conventional biochemical and optical assays often rely on endpoint or ensemble-averaged measurements and therefore fail to resolve the real-time binding dynamics underlying off-target interactions. Here, we report a label-free, non-faradaic electrochemical impedance spectroscopy (nfEIS) platform that directly monitors spCas9-gRNA interactions on gold microelectrodes with single-base resolution at the sickle cell disease (SCD) locus. A guide RNA was designed to perfectly match the SCD mutation (A to T) while introducing a single PAM-proximal mismatch with the wild-type DNA (WD) sequence. Using 63-nucleotide synthetic DNA substrates representing SCD and WD targets, concentration-dependent binding assays were performed to extract equilibrium parameters. Hill-model analysis revealed higher affinity for the SCD target (k D = 0.09 nM) relative to WD (k D = 0.3 nM), confirming strong on-target binding and weakened interaction at the mismatch site. Magnesium dependence evaluation showed that 5 mM Mg2+ enhanced discrimination by stabilizing on-target complexes while destabilizing mismatched binding, whereas at 1 mM Mg2+ this selectivity was lost. Time-resolved kinetic measurements using 1 nM spCas9 and exponential fitting of the curve revealed rapid association (t 1/2 = 1.85 min) and dissociation rates (t 1/2 = 5.24 min) for SCD, consistent with efficient R-loop formation. In contrast, the WD target exhibited slower association (t 1/2 = 2.68 min) and recurring transient binding with delayed dissociation (t 1/2 = 34.38 min), corroborated by endpoint gel assays. Cas9 lacking gRNA showed only weak, unstable interactions. Overall, these results demonstrate that Cas9 specificity arises from both affinity differences and binding-residence dynamics. nfEIS thus provides a real-time, label-free platform for probing Cas9 fidelity, Mg2+-dependent activation, and gRNA design for therapeutic genome editing and diagnostics.

CRISPR-Cas9能够实现治疗性基因组编辑,但需要精确控制目标识别,特别是当单核苷酸多态性(snp)影响特异性时。传统的生化和光学分析通常依赖于端点或集合平均测量,因此无法解决脱靶相互作用下的实时结合动力学。在这里,我们报告了一个无标记的,非法拉第电化学阻抗谱(nfEIS)平台,该平台直接监测spCas9-gRNA在金微电极上的单碱基分辨率的相互作用,在镰状细胞病(SCD)位点。设计了一个向导RNA来完美匹配SCD突变(A到T),同时引入一个与野生型DNA (WD)序列的单pam -近端不匹配。使用代表SCD和WD靶点的63个核苷酸合成DNA底物,进行浓度依赖性结合试验以提取平衡参数。Hill-model分析显示,相对于WD (k D = 0.3 nM), SCD对靶标(k D = 0.09 nM)具有更高的亲和力,证实了强的靶上结合和弱的错配位点相互作用。镁依赖性评估表明,5mm Mg2+通过稳定靶上复合物而破坏不匹配的结合来增强识别,而1mm Mg2+则失去了这种选择性。采用1 nM spCas9进行的时间分辨动力学测量和曲线的指数拟合显示,SCD的快速关联(t1 /2 = 1.85 min)和解离速率(t1 /2 = 5.24 min)与有效的r环形成一致。相反,WD靶蛋白表现出较慢的结合(t1 /2 = 2.68 min)和反复出现的瞬时结合与延迟解离(t1 /2 = 34.38 min),终点凝胶分析证实了这一点。缺乏gRNA的Cas9只表现出微弱的、不稳定的相互作用。总的来说,这些结果表明Cas9的特异性来自亲和力差异和结合-停留动力学。因此,nfEIS为检测Cas9保真度、Mg2+依赖性激活和用于治疗性基因组编辑和诊断的gRNA设计提供了一个实时、无标签的平台。
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引用次数: 0
1,8-Naphthalimide-derived reactivity-based fluorescent probes for detection and imaging of H2S 1,8-萘酰亚胺衍生反应性荧光探针用于H2S的检测和成像
IF 4.1 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2026-01-16 DOI: 10.1039/D5SD00201J
Mannanthara Kunhumon Noushija, Alenthwar Vamshi Krishna and Sankarasekaran Shanmugaraju

Hydrogen sulfide (H2S) is both an important biological signaling molecule and a toxic environmental pollutant, making its precise detection essential for biomedical research and environmental monitoring. Among the various sensing platforms available, amino-1,8-naphthalimide (Nap)-based fluorescent probes have become powerful tools for real-time H2S detection due to their high sensitivity, excellent selectivity, biocompatibility, and quick response. Nap fluorophores offer several inherent advantages—including strong and tunable emission, prominent intramolecular charge-transfer (ICT) characteristics, large Stokes shifts, and easy structural modification—making them especially attractive as scaffolds for developing activity-based probes. This review highlights recent developments in Nap-derived fluorescent sensors for H2S detection, categorizing the probes based on their reactive sites and sensing mechanisms, such as thiolysis, reduction, and nucleophilic substitution. For each category, we explore structure–function relationships, photophysical properties, sensing performance, and practical applications in biological and environmental settings. Finally, we address current challenges and future directions in designing next-generation Nap-based probes with enhanced ratiometric responses, targeted subcellular localization, two-photon excitation capabilities, and improved suitability for in vivo imaging. Overall, this review offers a comprehensive perspective to guide the rational development of innovative fluorescent tools for accurate and efficient H2S detection.

硫化氢(H2S)是一种重要的生物信号分子,也是一种有毒的环境污染物,它的精确检测对于生物医学研究和环境监测至关重要。在现有的传感平台中,氨基-1,8-萘酰亚胺(Nap)荧光探针以其高灵敏度、高选择性、生物相容性和快速响应能力成为实时检测H2S的有力工具。Nap荧光团具有几个固有的优势,包括强而可调的发射,突出的分子内电荷转移(ICT)特性,大的斯托克斯位移和易于结构修饰,使它们作为开发基于活性的探针的支架特别有吸引力。本文重点介绍了用于H2S检测的nap衍生荧光传感器的最新进展,并根据其反应位点和传感机制(如硫解、还原和亲核取代)对探针进行了分类。对于每个类别,我们探索结构-功能关系,光物理性质,传感性能以及在生物和环境设置中的实际应用。最后,我们提出了当前的挑战和未来的方向,设计下一代基于nap的探针,增强比率响应,靶向亚细胞定位,双光子激发能力,并提高了体内成像的适用性。综上所述,本文综述为合理开发创新的荧光检测工具以实现准确高效的H2S检测提供了全面的视角。
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引用次数: 0
Correction: Highly selective detection of ethanol in biological fluids and alcoholic drinks using indium ethylenediamine functionalized graphene 更正:使用铟乙二胺功能化石墨烯对生物液体和酒精饮料中的乙醇进行高选择性检测
IF 4.1 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2025-12-09 DOI: 10.1039/D5SD90045J
Ramin Boroujerdi, Amor Abdelkader and Richard Paul

Correction for ‘Highly selective detection of ethanol in biological fluids and alcoholic drinks using indium ethylenediamine functionalized graphene’ by Ramin Boroujerdi et al., Sens. Diagn., 2022, 1, 566–578, https://doi.org/10.1039/D2SD00011C.

对Ramin Boroujerdi等人的“使用铟乙二胺功能化石墨烯对生物液体和酒精饮料中的乙醇进行高选择性检测”的修正,Sens. Diagn。, 2022, 1, 566-578, https://doi.org/10.1039/D2SD00011C。
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引用次数: 0
Correction: High resolution voltammetric and field-effect transistor readout of carbon fiber microelectrode biosensors 校正:碳纤维微电极生物传感器的高分辨率伏安和场效应晶体管读数。
IF 4.1 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2025-12-09 DOI: 10.1039/D5SD90047F
Whirang Cho, Harmain Rafi, Seulki Cho, Arvind Balijepalli and Alexander G. Zestos

Correction for ‘High resolution voltammetric and field-effect transistor readout of carbon fiber microelectrode biosensors’ by Whirang Cho et al., Sens. Diagn., 2022, 1, 460–464, https://doi.org/10.1039/D2SD00023G.

[更正文章DOI: 10.1039/D2SD00023G.]。
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引用次数: 0
Correction: Turn-on fluorescent sensors for Cu-rich amyloid β peptide aggregates 更正:打开荧光传感器富铜β淀粉样蛋白肽聚集体。
IF 4.1 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2025-12-09 DOI: 10.1039/D5SD90046H
Yiran Huang, Liang Sun and Liviu M. Mirica

Correction for ‘Turn-on fluorescent sensors for Cu-rich amyloid β peptide aggregates’ by Yiran Huang et al., Sens. Diagn., 2022, 1, 709–713, https://doi.org/10.1039/D2SD00028H.

[这更正了文章DOI: 10.1039/D2SD00028H.]。
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引用次数: 0
Reproducible single-molecule optofluidic-SERS analysis on nanostar-activated diatom biosilica capsules 纳米星活化硅藻生物硅胶囊的可重复单分子光流体sers分析
IF 4.1 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2025-11-29 DOI: 10.1039/D5SD00161G
Subhavna Juneja, Sudipta Biswas, Kang Rong and Alan X. Wang

Single-molecule (SM) analysis with surface-enhanced Raman scattering (SERS) usually requires sophisticated engineering on plasmonic nanostructures to provide extremely strong hot-spots to enhance the intrinsically weak signal. In this work, we report a cell-sized biosilica capsule based on the diatom Pinnularia sp. frustule decorated with high-density bimetallic nanostars consisting of gold and silver, capable of achieving reproducible single-molecule SERS analysis. Such a plasmonic nanostar-activated biological photonic crystal nanostructure synthesized by a simple self-assembly method enhances hot-spots universally, which is proved by finite difference time domain simulation. The cell-sized biosilica capsule also concentrates trace-levels of target molecules from ultra-small fluidic droplets through a drop-on-demand inkjet-printing technique. We experimentally demonstrated reproducible SM optofluidic-SERS sensing from 120 nL of 10−15 M rhodamine 6G solution containing only 72 molecules through statistical analysis of mapping data over the cell-sized biosilica capsule, achieving a 3× higher signal-to-noise ratio and 9× better SM detection possibility compared to that on the glass substrate.

利用表面增强拉曼散射(SERS)进行单分子(SM)分析通常需要在等离子体纳米结构上进行复杂的工程设计,以提供极强的热点来增强本质微弱的信号。在这项工作中,我们报道了一种基于硅藻Pinnularia sp. frustle的细胞大小的生物硅胶囊,该胶囊用由金和银组成的高密度双金属纳米星装饰,能够实现可重复的单分子SERS分析。用一种简单的自组装方法合成的等离子体纳米星激活的生物光子晶体纳米结构普遍增强了热点,并通过时域有限差分仿真证明了这一点。细胞大小的生物硅胶囊还可以通过按需喷墨打印技术从超小的流体液滴中浓缩痕量的目标分子。通过统计分析细胞大小的生物硅胶囊上的映射数据,我们实验证明了在120 nL仅含有72个分子的10 - 15 M罗丹明6G溶液中可重复的SM光流- sers传感,与在玻璃基板上相比,实现了3倍的高信噪比和9倍的SM检测可能性。
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引用次数: 0
Adenosine detection technologies: recent advances and applications in the central nervous system 腺苷检测技术:最新进展及其在中枢神经系统中的应用
IF 4.1 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2025-11-19 DOI: 10.1039/D5SD00170F
Yuqin Liao, Jiayuan Jing, Wenkai Jin, Xiangdong Tian, Tianhuan Peng, Lei Zhang and Quan Yuan

Adenosine, a pivotal endogenous neuromodulator, plays a critical role in maintaining homeostasis related to sleep and emotion regulation. Mounting evidence indicates that dysregulated adenosine homeostasis is intricately involved in the pathological processes of brain disorders. Thus, the quantification of adenosine levels is crucial for evaluating disease states in the brain. Currently, numerous reviews have focused on adenosine detection technologies and their applications in tumor immunology and cardiovascular diseases. However, there have been few systematic reviews of adenosine monitoring in the central nervous system. Here, we first systematically summarize recent advances in adenosine detection technologies. Subsequently, we discuss the implications of adenosine detection in the regulation of central nervous system homeostasis. Finally, we highlight current challenges and future prospects, aiming to provide insights for the diagnosis, treatment, and prognosis of neurological disorders.

腺苷是一种重要的内源性神经调节剂,在维持与睡眠和情绪调节相关的体内平衡中起着至关重要的作用。越来越多的证据表明,失调的腺苷稳态复杂地参与了脑疾病的病理过程。因此,腺苷水平的量化对于评估大脑疾病状态至关重要。目前,关于腺苷检测技术及其在肿瘤免疫学和心血管疾病中的应用的综述较多。然而,很少有关于腺苷在中枢神经系统监测的系统综述。在这里,我们首先系统地总结了腺苷检测技术的最新进展。随后,我们讨论了腺苷检测在中枢神经系统稳态调节中的意义。最后,我们强调了当前的挑战和未来的前景,旨在为神经系统疾病的诊断、治疗和预后提供见解。
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引用次数: 0
A nucleic acid-based electrochemical detection method for post hoc sample analysis 一种用于样品事后分析的基于核酸的电化学检测方法。
IF 4.1 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2025-11-17 DOI: 10.1039/D5SD00164A
Logan T. Echeveria, Sadi Shahriar, Allison M. Yorita and Erkin Seker

This work introduces a new electrochemical sensing approach, where the liquid sample containing nucleic acid targets can be blotted onto an electrode that is pre-functionalized with probe DNA. The post-hybridization signal and probe DNA signal (obtained by melting the hybrid) can be successively measured later, making the sensing scheme resilient to probe layer deterioration and circumventing the need to measure probe signal immediately before sample collection, ultimately mitigating the need for electrochemical sensing equipment at the sample collection site.

这项工作引入了一种新的电化学传感方法,其中含有核酸靶点的液体样品可以被印迹到用探针DNA预功能化的电极上。杂交后的信号和探针DNA信号(通过熔化杂交得到)可以随后依次测量,使得传感方案对探针层退化具有弹性,并且避免了在样品采集前立即测量探针信号的需要,最终减少了对样品采集现场电化学传感设备的需求。
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引用次数: 0
Artificial intelligence-powered signal analysis of loop-mediated isothermal amplification (LAMP) for the screening of Kaposi sarcoma at the point of care 人工智能驱动的环介导等温扩增(LAMP)信号分析在护理点筛查卡波西肉瘤。
IF 4.1 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2025-11-11 DOI: 10.1039/D5SD00068H
Darke Hull, Juan Boza, Jason Manning, Xinying Chu, Ethel Cesarman, Aggrey Semeere, Jeffrey Martin and David Erickson

Unlike the polymerase chain reaction (PCR), loop-mediated isothermal amplification (LAMP) lacks a consistent thermal cycle, making quantification particularly challenging. Previously, we demonstrated that LAMP can accurately diagnose Kaposi sarcoma (KS) from skin lesion biopsies at the point of care (receiver operating characteristic area under the curve (AUC) = 0.967). A common approach in LAMP analysis involves setting a minimum absorbance threshold and time cutoff for positivity, which can introduce bias. We present a less biased, automated signal processing approach involving the fitting of a signal curve to five, two-parameter algebraic function fits, and the training of an artificial intelligence (AI) model on those parameters and their variances. An extreme gradient boosting (XGB) model was trained and tested on a primary dataset consisting of 1317 LAMP curves (from 451 unique patient samples with replicates). Five-fold k-validation on the train/test set yielded an receiver operating curve (ROC) area under the curve (AUC) of 0.952 ± 0.029. Each of the five-fold models were then validated on a separate secondary dataset of 966 LAMP curves (from 414 unique patient samples with replicates) and achieved an AUC of 0.950 ± 0.005. While the traditional methodology (which did not implement k-validation or a test/train split) outperformed the AI model's train/test set performance, the AI model generalized better and achieved a higher accuracy on the validation set (0.950 ± 0.005 vs. 0.9347). It performed even better when the analysis was applied directly to the raw signal data without additional pre-processing steps such as artifact filtering. This suggests that the AI model is more generalizable to new data and is able to discriminate KS-present and KS-absent samples better than traditional methods.

与聚合酶链反应(PCR)不同,环介导的等温扩增(LAMP)缺乏一致的热循环,使得定量尤其具有挑战性。先前,我们证明LAMP可以准确地从护理点的皮肤病变活检中诊断卡波西肉瘤(KS)(受试者工作特征曲线下面积(AUC) = 0.967)。LAMP分析中的一种常见方法包括为正性设置最小吸光度阈值和时间截止,这可能会引入偏差。我们提出了一种偏差较小的自动信号处理方法,包括信号曲线拟合到五个双参数代数函数拟合,以及对这些参数及其方差的人工智能(AI)模型的训练。在包含1317条LAMP曲线(来自451个具有重复的独特患者样本)的主要数据集上训练并测试了极端梯度增强(XGB)模型。在训练/测试集上进行5倍k验证,受试者工作曲线(ROC)曲线下面积(AUC)为0.952±0.029。然后在966个LAMP曲线(来自414个具有重复的独特患者样本)的独立二级数据集上验证每个五重模型,并获得0.950±0.005的AUC。虽然传统方法(没有实现k验证或测试/训练分割)优于AI模型的训练/测试集性能,但AI模型的泛化效果更好,并且在验证集上实现了更高的精度(0.950±0.005 vs. 0.9347)。当分析直接应用于原始信号数据时,它的性能甚至更好,而不需要额外的预处理步骤,如伪影滤波。这表明人工智能模型对新数据的可泛化性更强,并且能够比传统方法更好地区分ks存在和ks缺失的样本。
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引用次数: 0
Enhancing wearable piezoelectric sensors via micro-textured P(VDF–TrFE)/BaTiO3 nanofiber mats for physiological monitoring 微织构P(VDF-TrFE)/BaTiO3纳米纤维垫增强可穿戴压电传感器生理监测
IF 4.1 Q2 CHEMISTRY, ANALYTICAL Pub Date : 2025-11-11 DOI: 10.1039/D5SD00175G
Yan Xu, Shiman Yang, Cheng Liu, Haoyu Wu, Kaiping Huang, Wenhui Xu, Jiahe Wang and Yichun Ding

The advancement of wearable electronics for personalized healthcare demands flexible, high-performance pressure sensors capable of detecting both subtle physiological signals and large mechanical motions. In this work, we present a highly sensitive piezoelectric pressure sensor based on a micro-textured PVDF–TrFE/BaTiO3 composite nanofiber mat, fabricated via a facile electrospinning process. A commercial paper napkin was employed as a template collector to directly imprint a micro-structured architecture onto the nanofiber mat, eliminating the need for complex processes. The addition of BaTiO3 (BTO) nanoparticles significantly enhanced the piezoelectric response. The optimized piezoelectric sensor demonstrated outstanding performance with a sensitivity of ∼197 mV kPa−1, a fast response time of 3.5 ms, excellent frequency stability, and durability over 5000 loading cycles. Practical applicability was successfully verified through real-time monitoring of diverse physiological activities including arterial pulse, respiration, vocal vibrations, eye blinking, joint motion, and plantar pressure detection. These results underscore the potential of our sensor for use in wearable health monitoring, sports biomechanics, and human–machine interfaces, offering a scalable and cost-effective route to high-performance pressure sensing.

个性化医疗保健的可穿戴电子设备的进步需要灵活、高性能的压力传感器,能够检测细微的生理信号和大的机械运动。在这项工作中,我们提出了一种基于微纹理PVDF-TrFE /BaTiO3复合纳米纤维垫的高灵敏度压电压力传感器,通过简单的静电纺丝工艺制造。商业纸餐巾被用作模板收集器,直接将微结构结构印在纳米纤维垫子上,从而消除了复杂工艺的需要。BaTiO3 (BTO)纳米颗粒的加入显著增强了压电响应。优化后的压电传感器表现出优异的性能,灵敏度为~ 197 mV kPa−1,响应时间为3.5 ms,频率稳定性好,耐用性超过5000次加载循环。通过实时监测动脉脉搏、呼吸、声音振动、眨眼、关节运动、足底压力检测等多种生理活动,成功验证了其实用性。这些结果强调了我们的传感器在可穿戴健康监测、运动生物力学和人机界面方面的潜力,为高性能压力传感提供了可扩展和经济高效的途径。
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引用次数: 0
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Sensors & diagnostics
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