Maede Chabi, Binh Vu, Kristen Brosamer, Sophia Song, Vijay Maranholkar, Zihua Zeng, Youli Zu, Rashmi Kanagal-Shamanna, Jacinta C Conrad, Richard C Willson, Katerina Kourentzi
Due to the slow progression of most cancers, speed of diagnosis is not of primary concern. However, the diagnosis of acute promyelocytic leukemia (APL) is unusually urgent because its hemorrhagic complications can result in death within a few days. APL is highly treatable, but the turnaround time for standard molecular testing often exceeds the window for life-saving treatment, even in advanced medical centers. The hallmark of APL is the fusion of the PML and RARα genes (t(15;17)) resulting in the expression of a growth-promoting PML-RARα fusion protein. Toward timely screening for APL, we have developed a sensitive europium-based lateral flow immunoassay for direct detection of nuclear PML-RARα fusion oncoprotein. We demonstrated a limit of detection of 11% fusion protein positive NB4 cells spiked into healthy peripheral blood mononuclear cells and an integrated filter-based sample preparation workflow showcasing its potential for clinically actionable utility in prompt APL screening. With further validation with clinical human samples this lateral flow immunoassay has the potential to enable fusion-protein based cancer diagnostics at true point-of-care.
{"title":"Lateral flow assay-based detection of nuclear fusion oncoprotein: implications for screening of acute promyelocytic leukemia.","authors":"Maede Chabi, Binh Vu, Kristen Brosamer, Sophia Song, Vijay Maranholkar, Zihua Zeng, Youli Zu, Rashmi Kanagal-Shamanna, Jacinta C Conrad, Richard C Willson, Katerina Kourentzi","doi":"10.1039/d4sd00357h","DOIUrl":"10.1039/d4sd00357h","url":null,"abstract":"<p><p>Due to the slow progression of most cancers, speed of diagnosis is not of primary concern. However, the diagnosis of acute promyelocytic leukemia (APL) is unusually urgent because its hemorrhagic complications can result in death within a few days. APL is highly treatable, but the turnaround time for standard molecular testing often exceeds the window for life-saving treatment, even in advanced medical centers. The hallmark of APL is the fusion of the PML and RARα genes (t(15;17)) resulting in the expression of a growth-promoting PML-RARα fusion protein. Toward timely screening for APL, we have developed a sensitive europium-based lateral flow immunoassay for direct detection of nuclear PML-RARα fusion oncoprotein. We demonstrated a limit of detection of 11% fusion protein positive NB4 cells spiked into healthy peripheral blood mononuclear cells and an integrated filter-based sample preparation workflow showcasing its potential for clinically actionable utility in prompt APL screening. With further validation with clinical human samples this lateral flow immunoassay has the potential to enable fusion-protein based cancer diagnostics at true point-of-care.</p>","PeriodicalId":74786,"journal":{"name":"Sensors & diagnostics","volume":" ","pages":""},"PeriodicalIF":3.5,"publicationDate":"2025-03-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11938210/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143756311","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Supreeth Setty, Heeyeong Jang, Jungyoup Han, Joo Youn Park, Nogi Park, Keun Seok Seo and Chong Ahn
Recently, there has been a growing demand for the development of lab-on-a-chip (LOC) platforms with new assays and detection protocols for point-of-care-test (POCT) applications. So far, chemiluminescence (CL) detection-based immunoassays have shown promising performance for the high-sensitive POCT, but they require automated machines or multiple manual steps to perform the CL-based assay. In this work, a fully automated CL-based immunoassay was developed using a new sequential dual flow LOC with on-chip lyophilized CL substrate, and then a highly specific and sensitive immunoassay using a pair of single chain variable fragment (scFv) capture and detection antibodies was successfully performed. The concept of sequential and automatic control of dual flows, which was strongly desired for ensuring that the reconstituted detection antibody conjugated with horseradish peroxidase flowed first through the reaction zones and then the reconstituted CL substrate flowed, was newly developed and implemented on the LOC. In addition, a new one-component CL substrate in liquid format was introduced and lyophilized for the on-chip lyophilized substrate, developing a new lyophilization process. To evaluate the assay performance on the developed new LOC platform, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) was chosen as a demonstration vehicle. The nucleocapsid (N) protein of SARS-CoV-2 was analyzed using the custom-developed scFv antibody pair from a phage display library system, which showed a better limit of detection (LoD) over the commercially available rapid diagnostic test (RDT) kits for detecting SARS-CoV-2. Finally, a portable reader for reading the CL signal from the CL-based microchannel lateral flow assay (CL-mLFA) was developed and used for evaluating the performance of the SARS-CoV-2 assay on the developed LOC platform. An LoD of approximately 1.6 ng mL−1 was achieved, which was acceptable for the early diagnosis of SARS-CoV-2 infection. The new CL-mLFA platform developed in this work, adopting the sequential dual flow LOC and the lyophilized one-component CL substrate, can be applied to other high-sensitive immunoassays in POCT for diagnosing various chronic or infectious diseases.
{"title":"A new sequential dual flow lab-on-a-chip with a lyophilized one-component chemiluminescence substrate for high-sensitive microchannel lateral flow assay (mLFA)","authors":"Supreeth Setty, Heeyeong Jang, Jungyoup Han, Joo Youn Park, Nogi Park, Keun Seok Seo and Chong Ahn","doi":"10.1039/D4SD00352G","DOIUrl":"https://doi.org/10.1039/D4SD00352G","url":null,"abstract":"<p >Recently, there has been a growing demand for the development of lab-on-a-chip (LOC) platforms with new assays and detection protocols for point-of-care-test (POCT) applications. So far, chemiluminescence (CL) detection-based immunoassays have shown promising performance for the high-sensitive POCT, but they require automated machines or multiple manual steps to perform the CL-based assay. In this work, a fully automated CL-based immunoassay was developed using a new sequential dual flow LOC with on-chip lyophilized CL substrate, and then a highly specific and sensitive immunoassay using a pair of single chain variable fragment (scFv) capture and detection antibodies was successfully performed. The concept of sequential and automatic control of dual flows, which was strongly desired for ensuring that the reconstituted detection antibody conjugated with horseradish peroxidase flowed first through the reaction zones and then the reconstituted CL substrate flowed, was newly developed and implemented on the LOC. In addition, a new one-component CL substrate in liquid format was introduced and lyophilized for the on-chip lyophilized substrate, developing a new lyophilization process. To evaluate the assay performance on the developed new LOC platform, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) was chosen as a demonstration vehicle. The nucleocapsid (N) protein of SARS-CoV-2 was analyzed using the custom-developed scFv antibody pair from a phage display library system, which showed a better limit of detection (LoD) over the commercially available rapid diagnostic test (RDT) kits for detecting SARS-CoV-2. Finally, a portable reader for reading the CL signal from the CL-based microchannel lateral flow assay (CL-mLFA) was developed and used for evaluating the performance of the SARS-CoV-2 assay on the developed LOC platform. An LoD of approximately 1.6 ng mL<small><sup>−1</sup></small> was achieved, which was acceptable for the early diagnosis of SARS-CoV-2 infection. The new CL-mLFA platform developed in this work, adopting the sequential dual flow LOC and the lyophilized one-component CL substrate, can be applied to other high-sensitive immunoassays in POCT for diagnosing various chronic or infectious diseases.</p>","PeriodicalId":74786,"journal":{"name":"Sensors & diagnostics","volume":" 4","pages":" 320-335"},"PeriodicalIF":3.5,"publicationDate":"2025-03-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2025/sd/d4sd00352g?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143809061","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Kevin Alexander Janus, Madita Zach, Stefan Achtsnicht, Aleksander Drinic, Alexander Kopp, Michael Keusgen and Michael Josef Schöning
In this work, different surface treatment and modification procedures (KCl, Na2CO3, H2O2, O2 plasma, multi-walled carbon nanotubes (MWCNTs)) are applied to a screen-printed carbon-based electrode on bioabsorbable silk-fibroin, aiming to reduce the applied working potential in operation. The screen-printed carbon electrode houses the enzyme glucose oxidase for glucose monitoring, and is encapsulated by the biocompatible material Ecoflex. The working electrode is characterized amperometrically at different working potentials (0.6 to 1.2 V vs. the Ag/AgCl reference electrode) at physiological glucose concentrations ranging from 0.5 to 10 mM. The surface morphology of the electrode is analyzed utilizing scanning electron microscopy and contact angle measurements. Addition of 2 wt% MWCNTs to the carbon screen-printing paste allowed the reduction of the applied working potential from 1.2 to 0.8 V, resulting in a mean glucose sensitivity of 2.5 ± 0.6 μA cm−2 mM−1. Moreover, the bioabsorbability (i.e., the degradation behavior) of the different surface-treated carbon electrodes on silk-fibroin is studied over several months using the enzyme protease XIV from Streptomyces griseus.
{"title":"Modification of a bioabsorbable carbon electrode on silk-fibroin carriers: setting the composition and adjustment of the working potential†","authors":"Kevin Alexander Janus, Madita Zach, Stefan Achtsnicht, Aleksander Drinic, Alexander Kopp, Michael Keusgen and Michael Josef Schöning","doi":"10.1039/D4SD00371C","DOIUrl":"https://doi.org/10.1039/D4SD00371C","url":null,"abstract":"<p >In this work, different surface treatment and modification procedures (KCl, Na<small><sub>2</sub></small>CO<small><sub>3</sub></small>, H<small><sub>2</sub></small>O<small><sub>2</sub></small>, O<small><sub>2</sub></small> plasma, multi-walled carbon nanotubes (MWCNTs)) are applied to a screen-printed carbon-based electrode on bioabsorbable silk-fibroin, aiming to reduce the applied working potential in operation. The screen-printed carbon electrode houses the enzyme glucose oxidase for glucose monitoring, and is encapsulated by the biocompatible material Ecoflex. The working electrode is characterized amperometrically at different working potentials (0.6 to 1.2 V <em>vs.</em> the Ag/AgCl reference electrode) at physiological glucose concentrations ranging from 0.5 to 10 mM. The surface morphology of the electrode is analyzed utilizing scanning electron microscopy and contact angle measurements. Addition of 2 wt% MWCNTs to the carbon screen-printing paste allowed the reduction of the applied working potential from 1.2 to 0.8 V, resulting in a mean glucose sensitivity of 2.5 ± 0.6 μA cm<small><sup>−2</sup></small> mM<small><sup>−1</sup></small>. Moreover, the bioabsorbability (<em>i.e.</em>, the degradation behavior) of the different surface-treated carbon electrodes on silk-fibroin is studied over several months using the enzyme protease XIV from <em>Streptomyces griseus</em>.</p>","PeriodicalId":74786,"journal":{"name":"Sensors & diagnostics","volume":" 4","pages":" 353-362"},"PeriodicalIF":3.5,"publicationDate":"2025-03-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2025/sd/d4sd00371c?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143809064","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Kawin Khachornsakkul, Darrien Johnsen and Sameer Sonkusale
This article presents a simple and cost-effective headspace paper-based analytical device (hPAD) for the quantification of ammonia in human biological samples. The aim of this approach is to enhance the detection selectivity for ammonia in complex samples. The detection principle leverages basic chemistry, wherein ammonia reacts with copper sulfate (CuSO4) to form the complex ion tetraamminecopper(II) sulfate ([Cu(NH3)4]SO4), resulting in a colour change from pale blue to dark blue on a paper substrate. The quantitative analysis of ammonia is straightforward through placement of the sensor on the inside lid of the sample vial, and the resulting colour change is measured using a smartphone and image processing software. Upon optimization, the developed assay demonstrated a linear range between 2.5 and 40.0 μM (R2 = 0.9955) with a detection limit (LOD) of 0.90 μM. The sensor also exhibited high precision, with the highest relative standard deviation (RSD) recorded at 6.17%. Moreover, the method showed remarkable selectivity, as the sensor showed no response to common interfering molecules in a complex biological matrix. The technique is fast, requiring only 4 min for the reaction, and does not necessitate any heating procedures. Furthermore, the developed method provides excellent accuracy for detecting ammonia levels in both human serum and urine samples, with recovery rates ranging from 93.4% to 107.6%. Therefore, the hPAD offers a simple and affordable solution by sensing in the headspace that overcomes the limitations of direct measurement in the sample, which may be affected by the colour, pH, other existing ions and molecules in the sample solution. Overall, this approach is suitable for various applications in both medical and environmental analysis.
{"title":"Headspace paper-based analytical device for ammonia quantification in human biological samples","authors":"Kawin Khachornsakkul, Darrien Johnsen and Sameer Sonkusale","doi":"10.1039/D4SD00361F","DOIUrl":"https://doi.org/10.1039/D4SD00361F","url":null,"abstract":"<p >This article presents a simple and cost-effective headspace paper-based analytical device (hPAD) for the quantification of ammonia in human biological samples. The aim of this approach is to enhance the detection selectivity for ammonia in complex samples. The detection principle leverages basic chemistry, wherein ammonia reacts with copper sulfate (CuSO<small><sub>4</sub></small>) to form the complex ion tetraamminecopper(<small>II</small>) sulfate ([Cu(NH<small><sub>3</sub></small>)<small><sub>4</sub></small>]SO<small><sub>4</sub></small>), resulting in a colour change from pale blue to dark blue on a paper substrate. The quantitative analysis of ammonia is straightforward through placement of the sensor on the inside lid of the sample vial, and the resulting colour change is measured using a smartphone and image processing software. Upon optimization, the developed assay demonstrated a linear range between 2.5 and 40.0 μM (<em>R</em><small><sup>2</sup></small> = 0.9955) with a detection limit (LOD) of 0.90 μM. The sensor also exhibited high precision, with the highest relative standard deviation (RSD) recorded at 6.17%. Moreover, the method showed remarkable selectivity, as the sensor showed no response to common interfering molecules in a complex biological matrix. The technique is fast, requiring only 4 min for the reaction, and does not necessitate any heating procedures. Furthermore, the developed method provides excellent accuracy for detecting ammonia levels in both human serum and urine samples, with recovery rates ranging from 93.4% to 107.6%. Therefore, the hPAD offers a simple and affordable solution by sensing in the headspace that overcomes the limitations of direct measurement in the sample, which may be affected by the colour, pH, other existing ions and molecules in the sample solution. Overall, this approach is suitable for various applications in both medical and environmental analysis.</p>","PeriodicalId":74786,"journal":{"name":"Sensors & diagnostics","volume":" 4","pages":" 345-352"},"PeriodicalIF":3.5,"publicationDate":"2025-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2025/sd/d4sd00361f?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143809063","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Mannanthara Kunhumon Noushija, Alenthwar Vamshi Krishna, Ruhila Taj Mehboob Ali and Sankarasekaran Shanmugaraju
The design and fabrication of sensor probes to check food freshness and assess food quality is an essential area of research. Every year, millions of people are affected by food poisoning and fall victim to foodborne-related health problems. Cadaverine (1,5-pentanediamine) is a biogenic amine and an important biomarker to determine food freshness. Measuring cadaverine concentration allows us to assess the quality and freshness of food. Recently, fluorescence-based sensing methods have been used extensively as a viable probe to measure cadaverine concentrations. In this review article, we have summarized reactivity-based small-molecule fluorescence chemosensors reported to date for sensing and quantification of cadaverine. We provide a detailed discussion of the design, synthesis, and fluorescence-sensing properties of several small-molecule sensors employed for cadaverine detection. Lastly, the limitations of existing fluorescence sensors and our view on future perspectives for developing practically useful fluorescence sensor systems for real-time monitoring of the concentrations of cadaverine biomarkers have been stated. Given its importance, this review article will attract and greatly benefit scientists working in related research areas.
{"title":"Reactivity-based small-molecule fluorescence probes for sensing biogenic amine cadaverine – a biomarker to determine food freshness","authors":"Mannanthara Kunhumon Noushija, Alenthwar Vamshi Krishna, Ruhila Taj Mehboob Ali and Sankarasekaran Shanmugaraju","doi":"10.1039/D4SD00358F","DOIUrl":"https://doi.org/10.1039/D4SD00358F","url":null,"abstract":"<p >The design and fabrication of sensor probes to check food freshness and assess food quality is an essential area of research. Every year, millions of people are affected by food poisoning and fall victim to foodborne-related health problems. Cadaverine (1,5-pentanediamine) is a biogenic amine and an important biomarker to determine food freshness. Measuring cadaverine concentration allows us to assess the quality and freshness of food. Recently, fluorescence-based sensing methods have been used extensively as a viable probe to measure cadaverine concentrations. In this review article, we have summarized reactivity-based small-molecule fluorescence chemosensors reported to date for sensing and quantification of cadaverine. We provide a detailed discussion of the design, synthesis, and fluorescence-sensing properties of several small-molecule sensors employed for cadaverine detection. Lastly, the limitations of existing fluorescence sensors and our view on future perspectives for developing practically useful fluorescence sensor systems for real-time monitoring of the concentrations of cadaverine biomarkers have been stated. Given its importance, this review article will attract and greatly benefit scientists working in related research areas.</p>","PeriodicalId":74786,"journal":{"name":"Sensors & diagnostics","volume":" 4","pages":" 293-309"},"PeriodicalIF":3.5,"publicationDate":"2025-02-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2025/sd/d4sd00358f?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143809059","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
MicroRNAs (miRNAs) regulate gene expression and are important biomarkers in molecular diagnostics, prognosis, and personalized medicine. The miRNAs that are found within exosomes, also known as exo-miRs, have been shown to demonstrate increased levels of both abundance and stability. Thus, exo-miRs show potential as a reliable biomarker for further investigation. Due to the programmable nanostructures, biocompatibility, and excellent molecular recognition ability, biosensing platforms based on DNA nanomaterial are considered promising for detecting exo-miRs in clinical analysis, including cancer, neurodegenerative disorders, and infectious diseases. Although considerable advancements have been achieved in exo-miR-based testing, there are ongoing challenges in accurately detecting and analyzing multiple targets concurrently at low concentrations in complex biological samples. The primary focus of our research is to thoroughly analyze the biogenesis of exo-miRs, carefully assess their levels of expression in various clinical diseases, and comprehensively investigate their correlations with a wide range of diseases, including cancer, infection, and neurodegenerative disorders. We also examined recent progress in DNA nanomaterial-based detection methods for exo-miRs. This study explores the challenges and intricacies faced during the creation and execution of exo-miR tests within a clinical setting to diagnose diseases. The successful development and implementation of DNA nanomaterials for exo-miR detection can significantly revolutionize the early detection, monitoring, and management of various medical conditions, leading to enhanced healthcare outcomes.
微RNA(miRNA)可调控基因表达,是分子诊断、预后和个性化医疗的重要生物标志物。在外泌体中发现的 miRNA(也称为外miRs)已被证明在丰度和稳定性方面都显示出更高的水平。因此,外miRs显示出作为可靠生物标记物的潜力,有待进一步研究。基于 DNA 纳米材料的生物传感平台具有可编程纳米结构、生物相容性和出色的分子识别能力,因此被认为有望在癌症、神经退行性疾病和传染病等临床分析中检测外显子-miRs。虽然基于外显子-miR 的检测已取得了长足的进步,但在复杂的生物样本中同时准确检测和分析低浓度的多个靶点仍面临挑战。我们研究的主要重点是彻底分析外显子-miR 的生物发生,仔细评估它们在各种临床疾病中的表达水平,并全面研究它们与癌症、感染和神经退行性疾病等多种疾病的相关性。我们还研究了基于 DNA 纳米材料的外显子-miRs 检测方法的最新进展。本研究探讨了在临床环境中创建和执行外显子-miR 检测以诊断疾病所面临的挑战和错综复杂的问题。用于外显子-miR检测的DNA纳米材料的成功开发和实施将极大地改变各种疾病的早期检测、监测和管理,从而提高医疗保健效果。
{"title":"Biological properties and DNA nanomaterial biosensors of exosomal miRNAs in disease diagnosis","authors":"Zhikun Zhang, Md. Ahasan Ahamed and Dayong Yang","doi":"10.1039/D4SD00373J","DOIUrl":"https://doi.org/10.1039/D4SD00373J","url":null,"abstract":"<p >MicroRNAs (miRNAs) regulate gene expression and are important biomarkers in molecular diagnostics, prognosis, and personalized medicine. The miRNAs that are found within exosomes, also known as exo-miRs, have been shown to demonstrate increased levels of both abundance and stability. Thus, exo-miRs show potential as a reliable biomarker for further investigation. Due to the programmable nanostructures, biocompatibility, and excellent molecular recognition ability, biosensing platforms based on DNA nanomaterial are considered promising for detecting exo-miRs in clinical analysis, including cancer, neurodegenerative disorders, and infectious diseases. Although considerable advancements have been achieved in exo-miR-based testing, there are ongoing challenges in accurately detecting and analyzing multiple targets concurrently at low concentrations in complex biological samples. The primary focus of our research is to thoroughly analyze the biogenesis of exo-miRs, carefully assess their levels of expression in various clinical diseases, and comprehensively investigate their correlations with a wide range of diseases, including cancer, infection, and neurodegenerative disorders. We also examined recent progress in DNA nanomaterial-based detection methods for exo-miRs. This study explores the challenges and intricacies faced during the creation and execution of exo-miR tests within a clinical setting to diagnose diseases. The successful development and implementation of DNA nanomaterials for exo-miR detection can significantly revolutionize the early detection, monitoring, and management of various medical conditions, leading to enhanced healthcare outcomes.</p>","PeriodicalId":74786,"journal":{"name":"Sensors & diagnostics","volume":" 4","pages":" 273-292"},"PeriodicalIF":3.5,"publicationDate":"2025-02-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2025/sd/d4sd00373j?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143809058","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A method was developed for quantifying single-stranded DNA (ssDNA) through enzymatic digestion and using commercially available glucose test strips. The process involves the initial digestion of ssDNA using a combination of exonuclease 1 and alkaline phosphatase enzymes, leading to the liberation of phosphates from the ssDNA backbone as free orthophosphate. Subsequently, the orthophosphates react with maltose and maltose phosphorylase, producing equivalent amounts of glucose to orthophosphate. The resulting glucose, which can be related to the ssDNA concentration, can be measured amperometrically with an off-the-shelf glucose test strip connected to a mini potentiostat. This method offers versatility, allowing the determination of ssDNA, regardless of nucleotide-count or sequence, with increased sensitivity as the number of nucleotides (NT) in the DNA increases. The method exhibits a limit of detection of 780 nM for 22-NT, 527 nM for 53-NT, 422 nM for 75-NT, and 329 nM for 87-NT ssDNA, and a linear range of 0–2 μM. To selectively quantify a specific ssDNA target, a magnetic microparticle-based isolation step was incorporated, demonstrating high selectivity for quantifying a particular ssDNA target from a mixture. The method holds potential for label-free quantification of ssDNA that can have an impact in myriad fields.
{"title":"Label-free quantification of single-stranded DNA utilizing enzymatic digestion and an off-the-shelf glucose test strip†","authors":"Faisal Hossain and Michael J. Serpe","doi":"10.1039/D4SD00318G","DOIUrl":"https://doi.org/10.1039/D4SD00318G","url":null,"abstract":"<p >A method was developed for quantifying single-stranded DNA (ssDNA) through enzymatic digestion and using commercially available glucose test strips. The process involves the initial digestion of ssDNA using a combination of exonuclease 1 and alkaline phosphatase enzymes, leading to the liberation of phosphates from the ssDNA backbone as free orthophosphate. Subsequently, the orthophosphates react with maltose and maltose phosphorylase, producing equivalent amounts of glucose to orthophosphate. The resulting glucose, which can be related to the ssDNA concentration, can be measured amperometrically with an off-the-shelf glucose test strip connected to a mini potentiostat. This method offers versatility, allowing the determination of ssDNA, regardless of nucleotide-count or sequence, with increased sensitivity as the number of nucleotides (NT) in the DNA increases. The method exhibits a limit of detection of 780 nM for 22-NT, 527 nM for 53-NT, 422 nM for 75-NT, and 329 nM for 87-NT ssDNA, and a linear range of 0–2 μM. To selectively quantify a specific ssDNA target, a magnetic microparticle-based isolation step was incorporated, demonstrating high selectivity for quantifying a particular ssDNA target from a mixture. The method holds potential for label-free quantification of ssDNA that can have an impact in myriad fields.</p>","PeriodicalId":74786,"journal":{"name":"Sensors & diagnostics","volume":" 3","pages":" 256-264"},"PeriodicalIF":3.5,"publicationDate":"2025-02-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2025/sd/d4sd00318g?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143612037","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Olgac Özarslan, Begum Kubra Tokyay, Cansu Soylemez, Mehmet Tugrul Birtek, Zihni Onur Uygun, İpek Keles, Begum Aydogan Mathyk, Cihan Halicigil and Savas Tasoglu
The development of paper-based systems has revolutionized point-of-care (POC) applications by enabling rapid, robust, accurate and sensitive biochemical analysis, infectious disease diagnosis, and fertility monitoring, in particular, in male fertility monitoring, offering portable, cost-effective solutions compared to traditional methods. This innovation addresses high costs and limited accessibility of male fertility testing in resource-poor settings. Male infertility, a significant issue globally, often faces stigma, hindering men from seeking care. This study introduces a novel approach to male fertility testing using colorimetric analysis of paper-based assays, enhanced by synthetic imagery and the YOLOv8 (You Only Look Once) object detection algorithm. Synthetic imagery was employed to train and fine-tune YOLOv8, enhancing its capability to accurately detect color changes in paper-based tests. This colorimetric detection leverages smartphone imaging, making it both accessible and scalable. Initial experiments demonstrate that YOLOv8’s precision and efficiency, when combined with synthetic data, significantly enhance the system's ability to recognize and analyze colorimetric signals, positioning it as a promising tool for male fertility POC diagnostics. In our study, we evaluated 39 semen samples for pH and sperm count using standard clinical tests, comparing these results with a novel paper-based semen analysis kit. This kit utilizes reaction zones that exhibit color changes when exposed to semen samples, with images captured using a smartphone under varied lighting conditions. Despite a limited number of images, our synthetically trained YOLOv8 model achieved an accuracy of 0.86, highlighting its potential to improve the reliability of colorimetric analysis for both home and clinical use.
{"title":"Leveraging synthetic imagery and YOLOv8 for a novel colorimetric approach to paper-based point-of-care male fertility testing†","authors":"Olgac Özarslan, Begum Kubra Tokyay, Cansu Soylemez, Mehmet Tugrul Birtek, Zihni Onur Uygun, İpek Keles, Begum Aydogan Mathyk, Cihan Halicigil and Savas Tasoglu","doi":"10.1039/D4SD00348A","DOIUrl":"https://doi.org/10.1039/D4SD00348A","url":null,"abstract":"<p >The development of paper-based systems has revolutionized point-of-care (POC) applications by enabling rapid, robust, accurate and sensitive biochemical analysis, infectious disease diagnosis, and fertility monitoring, in particular, in male fertility monitoring, offering portable, cost-effective solutions compared to traditional methods. This innovation addresses high costs and limited accessibility of male fertility testing in resource-poor settings. Male infertility, a significant issue globally, often faces stigma, hindering men from seeking care. This study introduces a novel approach to male fertility testing using colorimetric analysis of paper-based assays, enhanced by synthetic imagery and the YOLOv8 (You Only Look Once) object detection algorithm. Synthetic imagery was employed to train and fine-tune YOLOv8, enhancing its capability to accurately detect color changes in paper-based tests. This colorimetric detection leverages smartphone imaging, making it both accessible and scalable. Initial experiments demonstrate that YOLOv8’s precision and efficiency, when combined with synthetic data, significantly enhance the system's ability to recognize and analyze colorimetric signals, positioning it as a promising tool for male fertility POC diagnostics. In our study, we evaluated 39 semen samples for pH and sperm count using standard clinical tests, comparing these results with a novel paper-based semen analysis kit. This kit utilizes reaction zones that exhibit color changes when exposed to semen samples, with images captured using a smartphone under varied lighting conditions. Despite a limited number of images, our synthetically trained YOLOv8 model achieved an accuracy of 0.86, highlighting its potential to improve the reliability of colorimetric analysis for both home and clinical use.</p>","PeriodicalId":74786,"journal":{"name":"Sensors & diagnostics","volume":" 4","pages":" 336-344"},"PeriodicalIF":3.5,"publicationDate":"2025-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2025/sd/d4sd00348a?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143809062","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Denise Gregucci, Maria Maddalena Calabretta, Faisal Nazir, Robert Josue Rodriguez Arias, Federico Biondi, Riccardo Desiderio and Elisa Michelini
Paper-based sensors have been widely used thanks to their potential for creating simple, low-cost, and sustainable analytical devices, making them particularly suitable for environmental monitoring. The aim of this work is to develop a ready-to-use colorimetric paper sensor, based on the Griess reaction, for nitrite on-site monitoring. We here address the requirement for a sustainable, sensitive, and low-cost nitrite sensor that combines, for the first time i) the use of paper as a support, ii) the immobilization of Griess reagents, iii) the origami strategy for triggering chemical reactions without the need for handling chemicals, and iv) a smartphone as a detector for quantitative measurements. While previous sensors for nitrite detection rely on a complex assay workflow and require separate instrumentation, our paper sensor simply needs a smartphone or, for qualitative results, the naked eye for instrument-free detection. The paper sensor showed satisfactory analytical performance for analysis of drinking water with recoveries from 87 to 110% and limits of detection and quantification for NO2− of 0.27 mg L−1 and 1.11 mg L−1, respectively. The sustainability of the sensor was also evaluated supporting its potential use for rapid monitoring of nitrites across a range of applications, including water quality assessment in agricultural runoff, wastewater treatment, and surface water monitoring.
{"title":"An origami colorimetric paper-based sensor for sustainable on-site and instrument-free analysis of nitrite†","authors":"Denise Gregucci, Maria Maddalena Calabretta, Faisal Nazir, Robert Josue Rodriguez Arias, Federico Biondi, Riccardo Desiderio and Elisa Michelini","doi":"10.1039/D4SD00308J","DOIUrl":"https://doi.org/10.1039/D4SD00308J","url":null,"abstract":"<p >Paper-based sensors have been widely used thanks to their potential for creating simple, low-cost, and sustainable analytical devices, making them particularly suitable for environmental monitoring. The aim of this work is to develop a ready-to-use colorimetric paper sensor, based on the Griess reaction, for nitrite on-site monitoring. We here address the requirement for a sustainable, sensitive, and low-cost nitrite sensor that combines, for the first time i) the use of paper as a support, ii) the immobilization of Griess reagents, iii) the origami strategy for triggering chemical reactions without the need for handling chemicals, and iv) a smartphone as a detector for quantitative measurements. While previous sensors for nitrite detection rely on a complex assay workflow and require separate instrumentation, our paper sensor simply needs a smartphone or, for qualitative results, the naked eye for instrument-free detection. The paper sensor showed satisfactory analytical performance for analysis of drinking water with recoveries from 87 to 110% and limits of detection and quantification for NO<small><sub>2</sub></small><small><sup>−</sup></small> of 0.27 mg L<small><sup>−1</sup></small> and 1.11 mg L<small><sup>−1</sup></small>, respectively. The sustainability of the sensor was also evaluated supporting its potential use for rapid monitoring of nitrites across a range of applications, including water quality assessment in agricultural runoff, wastewater treatment, and surface water monitoring.</p>","PeriodicalId":74786,"journal":{"name":"Sensors & diagnostics","volume":" 3","pages":" 239-246"},"PeriodicalIF":3.5,"publicationDate":"2025-01-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2025/sd/d4sd00308j?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143612035","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Nitric oxide (NO) is a ubiquitous and important biological mediator. However, its detection and chemical analysis are challenging due to its short lifetime in biological conditions. Paper-based NO sensors combining the ease of fabrication and affordability of paper with the quantitative capabilities of electrochemical methods are presented for the detection and quantification of NO in cultured cells. Nafion-coated and eugenol-functionalized paper devices were built and characterized using a NO donor. The electrochemical interferences from nitrite, a common interferent for NO sensing, were successfully screened out. Finally, preliminary data were obtained from 100 000 endothelial cells cultured directly, in an extracellular matrix, on the paper device. In response to vascular endothelial growth factor exposure, NO secretion was detected and quantified.
{"title":"Paper sensors for the measurement of nitric oxide release from endothelial cells","authors":"Syed Hassan Ali and Raphaël Trouillon","doi":"10.1039/D4SD00154K","DOIUrl":"https://doi.org/10.1039/D4SD00154K","url":null,"abstract":"<p >Nitric oxide (NO) is a ubiquitous and important biological mediator. However, its detection and chemical analysis are challenging due to its short lifetime in biological conditions. Paper-based NO sensors combining the ease of fabrication and affordability of paper with the quantitative capabilities of electrochemical methods are presented for the detection and quantification of NO in cultured cells. Nafion-coated and eugenol-functionalized paper devices were built and characterized using a NO donor. The electrochemical interferences from nitrite, a common interferent for NO sensing, were successfully screened out. Finally, preliminary data were obtained from 100 000 endothelial cells cultured directly, in an extracellular matrix, on the paper device. In response to vascular endothelial growth factor exposure, NO secretion was detected and quantified.</p>","PeriodicalId":74786,"journal":{"name":"Sensors & diagnostics","volume":" 4","pages":" 310-319"},"PeriodicalIF":3.5,"publicationDate":"2025-01-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2025/sd/d4sd00154k?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143809060","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}