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Mycofabrication of sustainable mycelium-based leather using Talaromyces sp. and irradiated eggplant peel waste. 利用Talaromyces和辐照茄子皮废料制备可持续菌丝体基皮革。
IF 3.7 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-08-22 DOI: 10.1186/s13568-025-01935-0
Reham M M Abdelkader, Ola M Gomaa

Agro-industry and leather manufacturing are considered two of the most polluting industries worldwide due to the huge amount of waste they produce that contributes to pollution. To address the challenges of food waste while contributing to sustainable leather production, this study explores the feasibility of developing an alternative, ecofriendly leather material. Talaormyces sp. was isolated from eggplant peel waste and was identified using phylogenetic ITS region (Genbank accession number: PQ007745); the closest relatedness was with Talaromyces atroroseus. Eggplant peel waste was exposed to electron beam irradiation at 5, 10, 15, 20, and 25 kGy. The results showed that exposure of eggplant peel waste to electron beam irradiation affected its rigidity, color, and tensile strength, where exposure to 15 kGy resulted in flexible material that showed tensile strength of 8 MPa, whereas non-irradiated sheets showed tensile strengths of 5 MPa. Modification and optimization of the cultivation media were performed using Full Factorial Design of Experiment. Sucrose (20, 40 g/L), calcium chloride (0.5, 1 M), and glycerol (10, 20%) were tested as 3 factors, two levels. The results showed that increasing the concentration of sucrose in the cultivation media from 20 to 40 g/L increased the mycelial network and induced exopolysaccharides, which act as the bio-binder in the mycelial-leather forming process. A post-treatment study was performed to ensure that there are no spores in the myco-product. These findings demonstrate that both fungal mycelium and eggplant waste-derived fungal sheets have great potential as ecofriendly materials with leather-like properties.

农用工业和皮革制造业被认为是世界上污染最严重的两个行业,因为它们产生的大量废物造成了污染。为了应对食物浪费的挑战,同时促进可持续的皮革生产,本研究探索了开发一种替代的、环保的皮革材料的可行性。talormyces sp.从茄子皮废弃物中分离得到,采用ITS区进行系统发育鉴定(Genbank登录号:PQ007745);最近的亲缘关系是与Talaromyces atroseus。以5、10、15、20和25 kGy的电子束辐照茄子皮为研究对象。结果表明,电子束辐照对茄子皮废材的硬度、颜色和抗拉强度都有影响,其中15 kGy辐照后的柔性材料的抗拉强度为8 MPa,而未辐照的薄片的抗拉强度为5 MPa。采用全因子试验设计对培养基进行了改良和优化。蔗糖(20、40 g/L)、氯化钙(0.5、1 M)、甘油(10、20%)作为3因素、2个水平进行试验。结果表明,培养基中蔗糖浓度从20 g/L增加到40 g/L,菌丝网络和诱导的胞外多糖在菌丝皮形成过程中起着生物粘合剂的作用。进行了处理后的研究,以确保菌产物中没有孢子。这些发现表明,真菌菌丝体和茄子废料衍生的真菌片都有很大的潜力作为具有皮革性质的生态友好材料。
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引用次数: 0
Antimicrobial and molluscicidal activities of Egyptian soil-derived Streptomyces rochei. 埃及土源罗氏链霉菌的抗菌和杀软体动物活性。
IF 3.7 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-08-22 DOI: 10.1186/s13568-025-01927-0
Nora Elfeky, Aya Abd Elsalam, Sabha El-Sabbagh, Asmaa Abdel-Motleb

Actinomycetes, are abundant sources of bioactive secondary metabolites with potential antibacterial and molluscicidal effects. This work aims to isolate and characterize actinomycetes strains from Egyptian soil, emphasizing the evaluating their antibacterial efficiency, optimizating their metabolite production, and assessing molluscicidal activities against Biomphalaria alexandrina (B. alexandrina), an intermediate host of Schistosoma mansoni (S. mansoni). Nineteen actinomycetes isolates were screened for antimicrobial activity against Escherichia coli (E. coli), Salmonella typhi (S. typhi), Pseudomonas aeruginosa (P. aeruginosa), Staphylococcus aureus (S. aureus), Candida albicans (C. albicans), and Penicillium marneffei (P. marneffei). Isolate No. 10, later identified as Streptomyces rochei ASN (S. rochei ) via 16 S rDNA sequencing and phylogenetic analysis, exhibited broad-spectrum antimicrobial activity and was selected for further study. Production media optimization revealed that modified nutritional agar, starch as a carbon source, sodium nitrate as a nitrogen source, and 25 °C incubation maximized antimicrobial metabolite production. Antibacterial activity increased with extended incubation time, peaking at 8 days. Dose-dependent inhibition was observed when different concentrations (20-80%) of cell-free supernatant (CFS) from S. rochei ASN were applied to test pathogens, with S. aureus, C. albicans, and P. marneffei being most susceptible. Scanning electron microscopy revealed severe cellular and structural damage in treated microbes. The CFS also demonstrated significant molluscicidal activity, with LC₅₀ and LC₉₀ values of 26.85 ppm and 40.95 ppm, respectively. It inhibited the hatchability of B. alexandrina eggs in a concentration- and age-dependent manner, and exerted rapid, dose-dependent mortality against S. mansoni miracidia and cercariae. Histological examinations of exposed snails showed degeneration in both hermaphrodite and digestive glands, including disrupted acinar structures, damaged oocytes and spermatocytes, vacuolated digestive cells, and degenerated secretory cells. S. rochei ASN, isolated from Egyptian soil, exhibits potent antimicrobial and molluscicidal activities. Its bioactivity is significantly influenced by growth conditions and medium composition. The strain holds promise as a natural biocontrol agent against pathogenic microbes and snail vectors involved in schistosomiasis transmission, warranting further pharmacological and ecological investigations.

放线菌是生物活性次生代谢物的丰富来源,具有潜在的抗菌和杀螺作用。本研究旨在从埃及土壤中分离和鉴定放线菌菌株,重点评价其抗菌效率,优化其代谢产物的产生,并评估其对曼氏血吸虫(S. mansoni)中间寄主alexandrina (B. alexandrina)的杀螺活性。筛选了19株放线菌对大肠杆菌(E. coli)、伤寒沙门氏菌(S. typhi)、铜绿假单胞菌(P. aeruginosa)、金黄色葡萄球菌(S. aureus)、白色念珠菌(C. albicans)和马尔尼菲青霉(P. marneffei)的抑菌活性。分离物10号经16s rDNA测序和系统发育分析鉴定为罗氏链霉菌ASN (S. rochei),具有广谱抗菌活性,被选为进一步研究对象。生产培养基优化表明,改性营养琼脂,淀粉为碳源,硝酸钠为氮源,25°C孵育可最大限度地产生抗菌代谢物。抗菌活性随着培养时间的延长而增加,在8天达到峰值。用不同浓度(20-80%)的罗氏金黄色葡萄球菌无细胞上清(CFS)检测病原菌,观察到剂量依赖性抑制作用,其中金黄色葡萄球菌、白色念珠菌和马尔尼菲假单胞菌最敏感。扫描电子显微镜显示处理过的微生物有严重的细胞和结构损伤。CFS也表现出显著的杀螺活性,LC₅₀和LC₉₀的值分别为26.85 ppm和40.95 ppm。对绿僵菌卵的孵化率具有浓度依赖性和年龄依赖性,对马氏马氏球菌和尾蚴具有快速的剂量依赖性致死作用。暴露的蜗牛的组织学检查显示雌雄同体和消化腺的变性,包括腺泡结构破坏,卵母细胞和精母细胞受损,消化细胞空泡化,分泌细胞变性。S. rochei ASN,分离自埃及土壤,显示出有效的抗菌和杀软体动物活性。其生物活性受生长条件和培养基组成的显著影响。该菌株有望作为一种天然生物防治剂,防治血吸虫病传播中的病原微生物和蜗牛媒介,值得进一步的药理学和生态学研究。
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引用次数: 0
Autonomous microfluidic influenza A/B subtyping system using on-chip multiplex isothermal amplification for field-deployable surveillance. 采用片上多路等温扩增的自主微流控流感A/B亚型系统,用于现场可部署监测。
IF 3.7 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-08-21 DOI: 10.1186/s13568-025-01933-2
Si-Ming Lu, Jia-Long Wang, Yang Li, Ling Zhang, Hang-Ping Yao, Li-Guo Liang

Influenza viruses present significant challenges to global health. A rapid recombinase polymerase amplification (RPA)-based detection system for multiple influenza strains (A, H1N1/H2N2/H3N2/H5N1/H7N9 and B) has been developed to address the limitations of 2-h Real-Time Quantitative Polymerase Chain Reaction (RT-qPCR) tests. By using optimized primers targeting key viral proteins (M, NA, HA, PA), the method achieves detection in 10 min with 0.99 log linearity (1-106 copies/μL). Clinical validation demonstrated 100% sensitivity and specificity, effectively distinguishing infections from healthy controls. This portable platform shows strong potential for point-of-care (POC) applications in resource-limited settings, offering timely diagnosis and epidemic control through its rapid and accurate detection capabilities.

流感病毒对全球卫生构成重大挑战。为解决2小时实时定量聚合酶链式反应(RT-qPCR)检测方法的局限性,建立了一种基于快速重组聚合酶扩增(RPA)的流感病毒(A、H1N1/H2N2/H3N2/H5N1/H7N9和B)检测系统。该方法利用优化后的引物靶向关键病毒蛋白(M、NA、HA、PA),检测时间为10 min,线性度为0.99 (1 ~ 106 copies/μL)。临床验证显示100%的敏感性和特异性,有效地将感染与健康对照区分开。这种便携式平台在资源有限的环境中显示出在护理点(POC)应用的巨大潜力,通过其快速准确的检测能力提供及时诊断和流行病控制。
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引用次数: 0
Phytochemical analysis and antimicrobial activity of Silybum marianum L. via multi-solvent extraction. 水飞蓟多溶剂萃取植物化学分析及抑菌活性研究。
IF 3.7 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-08-20 DOI: 10.1186/s13568-025-01925-2
Nashaat N Mahmoud, Mohamed T Selim

Milk thistle (Silybum marianum L.) is an essential medicinal plant belonging to the family Asteraceae. The active ingredient of milk thistle is silymarin, a key component used to treat numerous physical and biological ailments. This study aimed to compare the nutritional composition, total phenolic, flavonoid, and tannin contents, and the antimicrobial activities of S. marianum stems, leaves, and flowers extracted using five different solvents. Phytochemical assays were used to evaluate the total phenolic, flavonoid, and tannin contents in petroleum ether, ethyl acetate, acetone, methanol, and water extracts from different plant parts. The proximate composition showed that the leaves had a higher percentage of moisture (11.53%). In contrast, the flowers showed increased lipid content, carbohydrate, and protein concentration (5.17, 69.86, and 10.03%, respectively), and stems showed elevated ash content (28.67%) compared to leaves and flowers. In S. marianum, the highest yield was obtained from the flowers, while the leaves and stems produced progressively lower amounts, respectively. Among the solvents tested, extraction with water made the largest yield, followed in decreasing order by methanol, acetone, ethyl acetate, and petroleum ether. The findings of the study revealed that alkaloids, tannins, flavonoids, glycosides, steroids, quinones, phenols, anthraquinones, cardiac glycosides, and terpenoids were found by phytochemical analysis of S. marianum in different parts. At the same time, saponins and anthocyanins were completely absent in all parts. On the other hand, coumarins are present in leaves and flowers and are completely lacking in stems. The highest levels of phenol content, tannins, and flavonoids were found in the methanol extract of the flowers (183.12 ± 11.02 mg gallic acid equivalent/g (mg GAE/g), 187.43 ± 15.91 mg quercetin equivalents/g (mg QE/g), and 94.40 ± 16.04 mg TAE/g, respectively). In contrast, the water extract of stems had the lowest amount (5.45 ± 1.32 mg GAE/g, 9.60 ± 1.5 mg QE/g, and 3.27 ± 1.53 mg TAE/g, respectively). Antimicrobial tests revealed the extract's ability to inhibit several Gram-positive bacteria (S. aureus ATCC 6538 and B.subtilis ATCC 6633), Gram-negative bacteria (P. aeruginosa ATCC 9027, S. typhimurium ATCC 14028, E. coli ATCC 11229), and eukaryotic strains such as unicellular fungi (C.albicans ATCC 10231). These results confirm the potential of milk thistle extract as a naturally occurring antimicrobial agent.

水飞蓟(Silybum marianum L.)是菊科重要药用植物。水飞蓟的有效成分是水飞蓟素,这是一种用于治疗许多身体和生物疾病的关键成分。本研究旨在比较五种不同溶剂提取的苦参茎、叶和花的营养成分、总酚、类黄酮和单宁含量及其抑菌活性。采用植物化学法测定了不同植物部位的石油醚、乙酸乙酯、丙酮、甲醇和水提取物中总酚、类黄酮和单宁的含量。近似值表明,叶片水分含量较高(11.53%)。相比之下,花的脂肪含量、碳水化合物含量和蛋白质含量分别高于叶和花(5.17%、69.86和10.03%),茎的灰分含量高于叶和花(28.67%)。在美洲蓟中,花的产量最高,而叶和茎的产量分别逐渐降低。在各种溶剂中,水萃取得率最高,其次为甲醇、丙酮、乙酸乙酯、石油醚。通过植物化学分析发现,苦参不同部位含有生物碱、单宁、黄酮类、苷类、甾体、醌类、酚类、蒽醌类、心苷类和萜类化合物。同时,各部位皂苷和花青素均完全不存在。另一方面,香豆素存在于叶子和花中,而在茎中完全缺乏。甲醇提取物中酚、单宁和黄酮类化合物含量最高(分别为183.12±11.02 mg没食子酸当量/g (mg GAE/g)、187.43±15.91 mg槲皮素当量/g (mg QE/g)和94.40±16.04 mg TAE/g)。茎部水提物的GAE含量最低,分别为5.45±1.32 mg /g、9.60±1.5 mg QE/g和3.27±1.53 mg TAE/g。抗菌试验表明,该提取物能够抑制几种革兰氏阳性细菌(金黄色葡萄球菌ATCC 6538和枯草芽孢杆菌ATCC 6633)、革兰氏阴性细菌(铜绿假单胞菌ATCC 9027、鼠伤寒沙门氏菌ATCC 14028、大肠杆菌ATCC 11229)和真核细菌,如单细胞真菌(白色念珠菌ATCC 10231)。这些结果证实了水飞蓟提取物作为天然抗菌剂的潜力。
{"title":"Phytochemical analysis and antimicrobial activity of Silybum marianum L. via multi-solvent extraction.","authors":"Nashaat N Mahmoud, Mohamed T Selim","doi":"10.1186/s13568-025-01925-2","DOIUrl":"10.1186/s13568-025-01925-2","url":null,"abstract":"<p><p>Milk thistle (Silybum marianum L.) is an essential medicinal plant belonging to the family Asteraceae. The active ingredient of milk thistle is silymarin, a key component used to treat numerous physical and biological ailments. This study aimed to compare the nutritional composition, total phenolic, flavonoid, and tannin contents, and the antimicrobial activities of S. marianum stems, leaves, and flowers extracted using five different solvents. Phytochemical assays were used to evaluate the total phenolic, flavonoid, and tannin contents in petroleum ether, ethyl acetate, acetone, methanol, and water extracts from different plant parts. The proximate composition showed that the leaves had a higher percentage of moisture (11.53%). In contrast, the flowers showed increased lipid content, carbohydrate, and protein concentration (5.17, 69.86, and 10.03%, respectively), and stems showed elevated ash content (28.67%) compared to leaves and flowers. In S. marianum, the highest yield was obtained from the flowers, while the leaves and stems produced progressively lower amounts, respectively. Among the solvents tested, extraction with water made the largest yield, followed in decreasing order by methanol, acetone, ethyl acetate, and petroleum ether. The findings of the study revealed that alkaloids, tannins, flavonoids, glycosides, steroids, quinones, phenols, anthraquinones, cardiac glycosides, and terpenoids were found by phytochemical analysis of S. marianum in different parts. At the same time, saponins and anthocyanins were completely absent in all parts. On the other hand, coumarins are present in leaves and flowers and are completely lacking in stems. The highest levels of phenol content, tannins, and flavonoids were found in the methanol extract of the flowers (183.12 ± 11.02 mg gallic acid equivalent/g (mg GAE/g), 187.43 ± 15.91 mg quercetin equivalents/g (mg QE/g), and 94.40 ± 16.04 mg TAE/g, respectively). In contrast, the water extract of stems had the lowest amount (5.45 ± 1.32 mg GAE/g, 9.60 ± 1.5 mg QE/g, and 3.27 ± 1.53 mg TAE/g, respectively). Antimicrobial tests revealed the extract's ability to inhibit several Gram-positive bacteria (S. aureus ATCC 6538 and B.subtilis ATCC 6633), Gram-negative bacteria (P. aeruginosa ATCC 9027, S. typhimurium ATCC 14028, E. coli ATCC 11229), and eukaryotic strains such as unicellular fungi (C.albicans ATCC 10231). These results confirm the potential of milk thistle extract as a naturally occurring antimicrobial agent.</p>","PeriodicalId":7537,"journal":{"name":"AMB Express","volume":"15 1","pages":"122"},"PeriodicalIF":3.7,"publicationDate":"2025-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12367635/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144938841","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dissecting the role of gut microbiota heterogeneity in the onset of chronic lung diseases. 剖析肠道微生物群异质性在慢性肺部疾病发病中的作用。
IF 3.7 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-08-18 DOI: 10.1186/s13568-025-01930-5
Ya Lin, Xiaoxiao Zhang, Ziyi Zuo, Yijia Xiao

Evidence from observational studies and clinical trials has reported that gut microbiota (GM) was associated with chronic lung diseases (CLDs). However, the causal relationships between GM and CLDs have yet to be fully ascertained. The Mendelian randomization (MR) based causal analysis was performed using the genome-wide association study (GWAS) summary statistics from the MiBioGen and FinnGen consortium. GM served as exposure, and CLDs were taken for outcomes. Inverse variance weighted, MR-Egger, and weighted median methods were utilized to examine the causal association between GM and CLDs. The sensitivity analyses were then conducted to validate the robustness of the results. Further, the reverse MR analysis was performed to evaluate the possibility of reverse causation. Finally, the in-silico in-situ microbiota resequencing (ISSMR) of high-throughput sequencing data was utilized as a supplement to dissect the role of microbiota spatial distribution disturbance on the onset of idiopathic pulmonary fibrosis (IPF) and chronic obstructive pulmonary disease (COPD). This study revealed that GM had causal associations with CLDs. Conversely, reverse MR analysis suggested that the presence of COPD and IPF may causally influence the abundance of specific GM. And ISSMR further provided clues to the interaction of intra-tissue as well as gut microbe disturbance in IPF and COPD from synergistic or independent perspectives. In short, the MR analysis revealed a causal relationship between GM and CLDs from a host genetic perspective, and ISSMR extended the host-microbe regulatory modality from a microbe genetic perspective, thus together providing novel insights into the gut microbiota-mediated development mechanism of CLDs.

来自观察性研究和临床试验的证据表明,肠道微生物群(GM)与慢性肺部疾病(CLDs)有关。然而,GM和CLDs之间的因果关系尚未完全确定。基于孟德尔随机化(MR)的因果分析使用来自MiBioGen和FinnGen联盟的全基因组关联研究(GWAS)汇总统计数据进行。GM作为暴露,CLDs作为结果。采用反方差加权、MR-Egger和加权中位数方法来检验GM和CLDs之间的因果关系。然后进行敏感性分析以验证结果的稳健性。此外,进行反向MR分析以评估反向因果关系的可能性。最后,利用高通量测序数据的in-silico原位微生物群重测序(ISSMR)作为补充,剖析微生物群空间分布紊乱在特发性肺纤维化(IPF)和慢性阻塞性肺疾病(COPD)发病中的作用。本研究揭示转基因与CLDs有因果关系。相反,反向MR分析提示COPD和IPF的存在可能对特异性GM的丰度产生因果关系。ISSMR进一步从协同或独立的角度为IPF和COPD中组织内和肠道微生物紊乱的相互作用提供了线索。总之,MR分析从宿主遗传角度揭示了转基因与CLDs之间的因果关系,而ISSMR从微生物遗传角度扩展了宿主-微生物调控模式,从而共同为肠道微生物介导的CLDs发展机制提供了新的见解。
{"title":"Dissecting the role of gut microbiota heterogeneity in the onset of chronic lung diseases.","authors":"Ya Lin, Xiaoxiao Zhang, Ziyi Zuo, Yijia Xiao","doi":"10.1186/s13568-025-01930-5","DOIUrl":"10.1186/s13568-025-01930-5","url":null,"abstract":"<p><p>Evidence from observational studies and clinical trials has reported that gut microbiota (GM) was associated with chronic lung diseases (CLDs). However, the causal relationships between GM and CLDs have yet to be fully ascertained. The Mendelian randomization (MR) based causal analysis was performed using the genome-wide association study (GWAS) summary statistics from the MiBioGen and FinnGen consortium. GM served as exposure, and CLDs were taken for outcomes. Inverse variance weighted, MR-Egger, and weighted median methods were utilized to examine the causal association between GM and CLDs. The sensitivity analyses were then conducted to validate the robustness of the results. Further, the reverse MR analysis was performed to evaluate the possibility of reverse causation. Finally, the in-silico in-situ microbiota resequencing (ISSMR) of high-throughput sequencing data was utilized as a supplement to dissect the role of microbiota spatial distribution disturbance on the onset of idiopathic pulmonary fibrosis (IPF) and chronic obstructive pulmonary disease (COPD). This study revealed that GM had causal associations with CLDs. Conversely, reverse MR analysis suggested that the presence of COPD and IPF may causally influence the abundance of specific GM. And ISSMR further provided clues to the interaction of intra-tissue as well as gut microbe disturbance in IPF and COPD from synergistic or independent perspectives. In short, the MR analysis revealed a causal relationship between GM and CLDs from a host genetic perspective, and ISSMR extended the host-microbe regulatory modality from a microbe genetic perspective, thus together providing novel insights into the gut microbiota-mediated development mechanism of CLDs.</p>","PeriodicalId":7537,"journal":{"name":"AMB Express","volume":"15 1","pages":"119"},"PeriodicalIF":3.7,"publicationDate":"2025-08-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12361015/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144870880","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Correction: Molecular identification, antibiotic susceptibility, and biofilm formation of airborne bacteria. 更正:分子鉴定、抗生素敏感性和空气传播细菌的生物膜形成。
IF 3.7 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-08-18 DOI: 10.1186/s13568-025-01934-1
Malik Asif Hussain, Mubashir Zafar, Yusuf Saleem Khan, Kamaleldin B Said, Sadaf Anwar, Mohd Saeed, Mohammad A Abdulhakeem, Mejdi Snoussi, Mohd Adnan Kausar
{"title":"Correction: Molecular identification, antibiotic susceptibility, and biofilm formation of airborne bacteria.","authors":"Malik Asif Hussain, Mubashir Zafar, Yusuf Saleem Khan, Kamaleldin B Said, Sadaf Anwar, Mohd Saeed, Mohammad A Abdulhakeem, Mejdi Snoussi, Mohd Adnan Kausar","doi":"10.1186/s13568-025-01934-1","DOIUrl":"10.1186/s13568-025-01934-1","url":null,"abstract":"","PeriodicalId":7537,"journal":{"name":"AMB Express","volume":"15 1","pages":"118"},"PeriodicalIF":3.7,"publicationDate":"2025-08-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12361021/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144870879","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mediators linking gut microbiota and sporadic Creutzfeldt-Jakob disease: a Mendelian randomization study. 连接肠道微生物群和散发性克雅氏病的介质:一项孟德尔随机研究
IF 3.7 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-08-18 DOI: 10.1186/s13568-025-01932-3
Jie Shao, Tengfei Su, Jinyan Wang, Xiang Yin, Yue Lang, Yuxin Fu, Li Cui

While gut microbiome associations with sporadic Creutzfeldt-Jakob disease (sCJD) are recognized, causal mechanisms and mediation via cerebrospinal fluid (CSF) metabolites remain unestablished. Using bidirectional Mendelian randomization (MR) with mediation analysis and integrating genome-wide association study (GWAS) summary statistics from gut microbiota (​​composition in the FINRISK 2002 prospective cohort, n = 5,959​​), CSF metabolites (from the Wisconsin Alzheimer's Disease Research Center ​​Registry and Wisconsin Registry for Alzheimer's Prevention​​, n = 291), and sCJD case-control data (5,208 cases vs. 511,675 controls), we identified five microbial taxa influencing sCJD risk. Protective effects were observed for the family Atopobiaceae [odds ratio (OR) = 0.527, 95% confidence interval (CI) = 0.321-0.864, P = 0.011], the species Enterococcus faecalis (OR = 0.647, 95% CI = 0.427-0.980, P = 0.040), and the genus Lactobacillus (group B) (OR = 0.768, 95% CI = 0.602-0.981, P = 0.035). Conversely, the species Bacteroides eggerthii (OR = 1.228, 95% CI = 1.027-1.468, P = 0.025) and the order Chloroflexales (OR = 3.455, 95% CI = 1.214-9.835, P = 0.020) were pathogenic. Mediation analysis revealed that S-methylcysteine mediates 8.8% of ​​the effect of order Chloroflexales on sCJD risk​​, establishing it as a significant biological mediator in this pathogenic pathway. These findings provide novel biomarkers for early sCJD risk stratification, identify ​​the family Atopobiaceae, the species Enterococcus faecalis, and the genus Lactobacillus (group B)​​ as probiotic candidates for primary prevention, reveal S-methylcysteine pathway modulation as therapeutic entry points, and establish mechanistic foundations for disrupting gut-CSF transmission​​ in prion diseases.

虽然肠道微生物组与散发性克雅氏病(sCJD)的关联已得到确认,但因果机制和脑脊液(CSF)代谢物的介导作用仍未确定。采用双向孟德尔随机化(MR)和中介分析,整合全基因组关联研究(GWAS)汇总统计数据,包括肠道微生物群(FINRISK 2002前瞻性队列的组成,n = 5,959)、脑脊液代谢物(来自威斯康星州阿尔茨海默病研究中心登记处和威斯康星州阿尔茨海默病预防登记处,n = 291)和sCJD病例对照数据(5208例与511,675例对照),我们确定了影响sCJD风险的五个微生物分类群。对阿托宾科菌[优势比(OR) = 0.527, 95%可信区间(CI) = 0.321 ~ 0.864, P = 0.011]、粪肠球菌(OR = 0.647, 95% CI = 0.427 ~ 0.980, P = 0.040)、乳酸菌属(B组)(OR = 0.768, 95% CI = 0.602 ~ 0.981, P = 0.035)均有保护作用。相反,鸡蛋拟杆菌属(Bacteroides eggerthii) (OR = 1.228, 95% CI = 1.027 ~ 1.468, P = 0.025)和氯藻目(Chloroflexales) (OR = 3.455, 95% CI = 1.214 ~ 9.835, P = 0.020)致病。中介分析显示,s -甲基半胱氨酸介导了8.8%的氯蚤对sCJD风险的影响,确立了s -甲基半胱氨酸在该致病途径中的重要生物学介质地位。这些发现为早期sCJD风险分层提供了新的生物标志物,确定了Atopobiaceae科,粪肠球菌和乳杆菌属(B组)作为一级预防的候选益生菌,揭示了s -甲基半胱氨酸途径调节作为治疗切入点,并建立了破坏prion疾病中肠- csf传播的机制基础。
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引用次数: 0
Therapeutic potential of recombinant IL-22BP in psoriasis: suppression of IL-22/STAT3 signaling in mice. 重组IL-22BP对银屑病的治疗潜力:抑制小鼠IL-22/STAT3信号
IF 3.7 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-08-18 DOI: 10.1186/s13568-025-01931-4
Xiuze Chen, Tao Zeng, Fang Fang, Qinyu Tian, Yingying Li, Wenlin Zhou, Binqian Gong, Na Tian, Jizhou Zhang, Yechen Xiao

Psoriasis is a persistent immune-mediated inflammatory disorder that adversely affects the skin. Interleukin-22 (IL-22) is integral to the development and pathophysiology of psoriasis, and targeting IL-22 may serve as a promising therapeutic approach for treating the condition. IL-22 binding protein (IL-22BP) exhibits a binding affinity for IL-22 that far surpasses that of IL-22RA1 and functions as a natural antagonist of IL-22. Traditional IL-22BP production methods predominantly rely on eukaryotic animal cell expression systems, which generally require complex processes, resulting in low yield and high production costs. This study reports the expression of long-acting IL-22BP with a high yield and purity over 90% in Escherichia coli by fusion with the albumin-binding structural domain ABD. The biological functions of rhIL-22BP-ABD were assessed utilizing cell lines and a murine model. Our findings indicated that rhIL-22BP-ABD successfully suppressed IL-22-induced proliferation of HaCaT cells in vitro and alleviated imiquimod-induced psoriasis inflammation in mice. Furthermore, rhIL-22BP-ABD can effectively inhibit the signaling of its downstream signaling pathway STAT3 and the associated inflammatory factors by binding to IL-22, which is beneficial to the recovery of psoriasis. These findings provide a basis for forthcoming extensive studies on the rhIL-22BP-ABD protein for industrial manufacturing and pharmaceutical development.

牛皮癣是一种持续的免疫介导的炎症性疾病,对皮肤有不利影响。白介素-22 (IL-22)在银屑病的发展和病理生理中是不可或缺的,靶向IL-22可能是治疗银屑病的一种有希望的治疗方法。IL-22结合蛋白(IL-22BP)对IL-22的结合亲和力远远超过IL-22RA1,是IL-22的天然拮抗剂。传统的IL-22BP生产方法主要依靠真核动物细胞表达系统,工艺复杂,产量低,生产成本高。本研究报道了通过与白蛋白结合结构域ABD融合,在大肠杆菌中高产纯度超过90%的长效IL-22BP的表达。利用细胞系和小鼠模型对rhIL-22BP-ABD的生物学功能进行了评价。我们的研究结果表明,rhIL-22BP-ABD成功地抑制了il -22诱导的HaCaT细胞的体外增殖,并减轻了咪喹莫德诱导的小鼠银屑病炎症。此外,rhIL-22BP-ABD可通过与IL-22结合,有效抑制其下游信号通路STAT3的信号通路及相关炎症因子,有利于银屑病的康复。这些发现为今后对rhIL-22BP-ABD蛋白进行工业生产和药物开发的广泛研究提供了基础。
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引用次数: 0
Antibacterial activity of fungus comb extracts from Senegalese fungus-farming termites. 塞内加尔养殖白蚁菌冠提取物的抑菌活性。
IF 3.7 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-08-13 DOI: 10.1186/s13568-025-01917-2
Mapenda Gaye, Amira Zhor Rim Zinai, Nicholas Armstrong, Gaetan Herbette, Valérie Monnier, Hubert Bassene, Georges Diatta, Masse Sambou, Cheikh Sokhna, Didier Raoult, Florence Fenollar, Oleg Mediannikov

Fungus-farming termites (Macrotermitinae), predominantly found in Africa, are eusocial insects with significant ecological roles. Historically, they have been valued in traditional medicine, human diets, and livestock feed. These termites share a long-standing symbiotic relationship with Termitomyces fungi, which has evolved over millions of years and is critical to their survival and ecological impact. This mutualism promotes a unique monoculture of Termitomyces in the fungus comb while suppressing fungal and bacterial antagonists, likely due to the comb's structural or chemical properties, sparking interest among researchers. In this study, we conducted an extensive examination of 11 fungus combs associated with five termite species collected in Senegal. Our analysis revealed significant antibacterial properties in the crude extracts of the combs, notably against multidrug-resistant strains. Chemical analyses led to the identification of dicrotalic acid (Meglutol) in the active fractions of two combs from agricultural areas. This compound, likely of plant origin, suggests a link between termite feeding habits and the antimicrobial potential of the combs. Although the exact bioactive compounds responsible for the antimicrobial activity have not yet been fully identified, the presence of various metabolites may explain the maintenance of Termitomyces monocultures and the suppression of pathogens. This also illustrates the complex ecological relationship between Termitomyces and termites, which may work together to produce natural bioactive compounds that suppress pathogens.

农真菌白蚁(Macrotermitinae)主要分布在非洲,是一种具有重要生态作用的真社会性昆虫。从历史上看,它们在传统医学、人类饮食和牲畜饲料中都很有价值。这些白蚁与白蚁真菌有着长期的共生关系,白蚁真菌已经进化了数百万年,对它们的生存和生态影响至关重要。这种共生关系促进了真菌梳中白蚁菌的独特单一培养,同时抑制了真菌和细菌拮抗剂,可能是由于梳的结构或化学性质,引起了研究人员的兴趣。在这项研究中,我们对在塞内加尔收集的与五种白蚁有关的11个真菌梳进行了广泛的检查。我们的分析显示,梳子的粗提取物具有显著的抗菌特性,特别是对多重耐药菌株。化学分析鉴定了两种来自农业地区的梳子的活性组分中含有双氯乙酸(Meglutol)。这种化合物可能来自植物,表明白蚁的摄食习惯和梳子的抗菌潜力之间存在联系。尽管对抗菌活性负责的确切生物活性化合物尚未完全确定,但各种代谢物的存在可能解释了白蚁单株培养的维持和病原体的抑制。这也说明了白蚁和白菌之间复杂的生态关系,它们可能共同产生抑制病原体的天然生物活性化合物。
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引用次数: 0
Inflammation biomarkers mediate causal inference of the effect of skin microbiota on the risk of allergic diseases. 炎症生物标志物介导皮肤微生物群对过敏性疾病风险影响的因果推断。
IF 3.7 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-08-12 DOI: 10.1186/s13568-025-01924-3
Yuting Zhang, Yanjuan Wu, Xiaofen Su, Qiming Gan, Yutong Ding, Jingcun Wang, Xinni Wang, Nuofu Zhang, Kang Wu

Alterations in skin microbiota composition have been linked to allergic diseases, but the causal relationship remains unclear. To investigate the causal relationship between skin microbiota, allergic diseases, and inflammation biomarkers using Mendelian randomization (MR). We integrated summary statistics from genome-wide association studies (GWAS) of skin microbiota inflammation biomarkers, and seven allergic diseases. Inverse variance weighting (IVW) served as the primary statistical method, with supplementary analyses using MR-Egger regression, weighted median, and Weighted mode. Sensitivity analyses, including Cochran's Q test, MR-Egger intercept test and MR-PRESSO outlier detection, were conducted to validate and stabilize our findings. Two-step MR analyses were performed to identify potential mediating inflammation biomarkers between skin microbiota and allergic diseases.We identified 43 significant causal relationships between the skin microbiota and seven allergic diseases: allergic disease as a whole, asthma (adult, pediatric, allergic), allergic conjunctivitis, allergic rhinitis, atopic dermatitis, allergic urticaria and eczema, which included 20 protective and 23 risk causal relationships, respectively. Mediation analysis showed that specific biomarkers, such as C-C motif chemokine 19 and CD40L receptor levels, Interleukin-18 and TNF-β mediated these associations. This MR study provides robust evidence supporting causal relationships between specific skin microbiota taxa and allergic diseases, as well as potential mediating roles of inflammation biomarkers.

皮肤微生物群组成的改变与过敏性疾病有关,但因果关系尚不清楚。利用孟德尔随机化(MR)研究皮肤微生物群、过敏性疾病和炎症生物标志物之间的因果关系。我们整合了皮肤微生物群炎症生物标志物和7种过敏性疾病的全基因组关联研究(GWAS)的汇总统计数据。以方差逆加权(IVW)为主要统计方法,辅以MR-Egger回归、加权中位数和加权模式进行分析。进行敏感性分析,包括科克伦Q检验、MR-Egger截距检验和MR-PRESSO异常值检测,以验证和稳定我们的发现。进行两步磁共振分析,以确定皮肤微生物群和过敏性疾病之间潜在的介导炎症生物标志物。我们确定了皮肤微生物群与七种过敏性疾病之间的43个显著因果关系:过敏性疾病整体、哮喘(成人、儿童、过敏性)、过敏性结膜炎、过敏性鼻炎、特应性皮炎、过敏性荨麻疹和湿疹,其中分别包括20个保护性因果关系和23个风险因果关系。中介分析表明,特定的生物标志物,如C-C基序趋化因子19和CD40L受体水平,白细胞介素-18和TNF-β介导了这些关联。这项MR研究提供了强有力的证据,支持特定皮肤微生物群与过敏性疾病之间的因果关系,以及炎症生物标志物的潜在介导作用。
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