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Diploid Interspecific Recombinant Inbred Lines for Genetic Mapping in Potato 用于马铃薯遗传制图的二倍体种间重组近交系
IF 1.5 4区 农林科学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-17 DOI: 10.1007/s12230-024-09953-7
Shelley Jansky, Andy Hamernik, Jeffrey B. Endelman

Recombinant inbred line (RIL) populations are powerful mapping tools in many crops but have not yet been created using cultivated potato germplasm. We crossed the doubled monoploid cultivated clone DM 1–3 with the self-compatible diploid inbred wild clone M6 to create a diploid F1 hybrid. One F1 plant was self- pollinated to generate a phenotypically diverse F2 population, which was selfed to create 87 RILs. This is the first report of a RIL population developed from a cultivated x wild hybrid in potato. Poor fertility was a significant challenge in creating RILs. Nevertheless, we generated inbred lines that ranged from high to low fertility, vigor, and tuber production. F6 RILs ranged from 98 to 68% homozygosity, based on 2884 SNP markers. Considering the phenotypic variability between the two parents and among the RILs, we expect the RIL population to be valuable for mapping traits important to the potato industry.

重组近交系(RIL)群体是许多作物的强大制图工具,但尚未利用栽培马铃薯种质创建过重组近交系。我们将加倍单倍体栽培克隆 DM 1-3 与自交不亲和的二倍体近交野生克隆 M6 杂交,产生了二倍体 F1 杂交种。一株 F1 通过自花授粉产生了表型多样化的 F2 群体,该群体通过自交产生了 87 个 RIL。这是首次报道由马铃薯栽培×野生杂交种培育出的 RIL 群体。繁殖力差是产生 RILs 的一个重大挑战。尽管如此,我们还是培育出了育性、活力和块茎产量从高到低的近交系。基于 2884 个 SNP 标记,F6 RIL 的同源性从 98% 到 68% 不等。考虑到两个亲本之间以及 RIL 之间的表型变异性,我们预计 RIL 群体对于绘制马铃薯产业的重要性状图谱很有价值。
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引用次数: 0
Use of an Impact Recording Device to Determine the Risk of Bruising in Packaged Potatoes 使用冲击记录装置确定包装马铃薯的瘀伤风险
IF 1.5 4区 农林科学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-03 DOI: 10.1007/s12230-024-09952-8
R. L. Hendricks, N. Olsen, M. Thornton, P. Hatzenbuehler

Handling potatoes individually or collectively in packages can create opportunities for potatoes to develop quality defects including blackspot and shatter bruise. Three trials were conducted to examine how handling packaged potatoes can influence the risk for physical damage including shatter and blackspot bruise. An impact recording device was used to record peak acceleration (max g-force) in common fresh market packaging options (boxes or bales) at four drop heights (15 to 91 cm) on to three different surface types. When boxed potatoes were dropped onto concrete or a plastic slip, the potatoes on the bottom of the box had the highest risk of damage (greater than 100 g-force). When drop heights were lowered, or when cushioning material was added to hard surfaces (e.g., wooden pallet on top of concrete floor), the risk for impact damage was decreased throughout the box. When palletizing boxed potatoes, the risk of bruise decreased after the first layer was stacked on the pallet. Drop heights need to be below 15 cm, especially when making the first layer in a palletized stack of packaged potatoes to reduce potential bruising. The risk of high peak accelerations was not seen in the dropped or stationary bales for any of the drop heights examined. This study provided information for educating personnel on handling packaged potatoes and determining situations in which robotic stacking equipment needs to be adjusted to lower drop heights of packaged potatoes.

单独处理马铃薯或在包装中集体处理马铃薯都有可能导致马铃薯出现质量缺陷,包括黑斑和破碎瘀伤。我们进行了三项试验,以研究处理包装马铃薯如何影响物理损坏(包括破碎和黑斑瘀伤)的风险。使用撞击记录装置记录常见的新鲜市场包装选项(盒或包)在四种跌落高度(15 厘米至 91 厘米)下跌落到三种不同表面类型时的峰值加速度(最大 g 力)。当盒装马铃薯掉落到混凝土或塑料滑板上时,盒底部的马铃薯受损风险最高(大于 100 g-力)。如果降低下落高度,或在坚硬表面上添加缓冲材料(如在水泥地面上放置木托盘),整个箱子受到冲击损坏的风险就会降低。将盒装马铃薯码垛时,第一层马铃薯堆放在托盘上后,撞伤的风险就会降低。跌落高度需要低于 15 厘米,尤其是在用托盘堆放包装马铃薯的第一层时,以减少潜在的擦伤。在检查的任何下落高度中,下落或静止的马铃薯包都没有出现峰值加速度过高的风险。这项研究为教育人员如何处理包装好的马铃薯以及确定在何种情况下需要调整机器人堆垛设备以降低包装好的马铃薯的下落高度提供了信息。
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引用次数: 0
Development of KASP Markers for the Potato Virus Y Resistance Gene Rychc Using Whole-Genome Resequencing Data 利用全基因组重测序数据为马铃薯病毒 Y 抗性基因 Rychc 开发 KASP 标记
IF 1.5 4区 农林科学 Q1 Agricultural and Biological Sciences Pub Date : 2024-03-28 DOI: 10.1007/s12230-024-09944-8
Kenji Asano, Jeffrey B. Endelman

Potato virus Y is the most important potato virus worldwide, affecting tuber yield and quality. The resistance gene Rychc, derived from the potato wild relative Solanum chacoense, provides broad spectrum and durable resistance to the virus and has been used to develop resistant cultivars. Several DNA markers have been developed and have contributed to the efficient selection of resistant individuals. In this study, we developed Kompetitive Allele Specific PCR markers for Rychc using whole-genome resequencing data for a diverse set of 25 PVY susceptible cultivars and a Rychc-positive clone. Marker Ry_4099 targets two variants in the 3ʹ-UTR and was able to discriminate all five allele dosages in a tetraploid test population. Marker Ry_3331 targets two variants in Exon 4 and, although it only provides presence/absence information, it discriminates between the two known resistant alleles of Rychc. These markers will greatly contribute to efficient development of resistant cultivars.

马铃薯病毒 Y 是全球最重要的马铃薯病毒,影响块茎的产量和质量。抗性基因 Rychc 源自马铃薯野生近缘植物 Solanum chacoense,对病毒具有广谱和持久的抗性,已被用于培育抗性栽培品种。目前已开发出几种 DNA 标记,有助于高效筛选抗性个体。在本研究中,我们利用 25 个 PVY 易感栽培品种和一个 Rychc 阳性克隆的全基因组重测序数据,开发了 Rychc 的竞争性等位基因特异性 PCR 标记。标记 Ry_4099 针对 3ʹ-UTR 中的两个变体,能够区分四倍体测试群体中的所有五个等位基因剂量。标记 Ry_3331 针对外显子 4 中的两个变异,虽然只能提供存在/不存在信息,但它能区分 Rychc 的两个已知抗性等位基因。这些标记将极大地促进抗性栽培品种的高效开发。
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引用次数: 0
Fluctuations in Radiation Use Efficiency Throughout the Growth Cycle in Diploid Potato Crop 二倍体马铃薯作物整个生长周期中辐射利用效率的波动
IF 1.5 4区 农林科学 Q1 Agricultural and Biological Sciences Pub Date : 2024-03-28 DOI: 10.1007/s12230-023-09938-y

Abstract

The capture of incoming solar radiation under unlimited light, water, and nutrient conditions by plant canopies and converting it into biomass has been described as radiation use efficiency (RUE). RUE has been computed as a function of biomass accumulation and intercepted photosynthetically active radiation without considering the loss of photoassimilates due to respiratory processes. This study evaluated the RUE in diploid potato crop (Solanum phureja Juz. et Buk.) across six experiments in Colombia. Total biomass was measured during the crop season from the early vegetative stage through maturity. However, this proposal involves not only the total biomass accumulated concerning the amount of photosynthetically active radiation intercepted but also took into account the losses by respiration, following Thornley respiration approach. This research demonstrates that the RUE is not a constant value as the respiration process leads to RUE values being variable in a non-linear way over time. The daily RUE simulation, conducted through an interpolation process, revealed significant variation from emergence to the end of the cycle. This indicates an error in assuming a constant RUE throughout the entire growth period, particularly in assessing its physiological impact across the entire growth and development crop cycle.

摘要 植物冠层在无限光照、水分和养分条件下捕获进入的太阳辐射并将其转化为生物量的过程被称为辐射利用效率(RUE)。辐射利用效率是作为生物量积累和截获的光合有效辐射的函数来计算的,而不考虑呼吸过程造成的光同化物的损失。本研究评估了二倍体马铃薯作物(Solanum phureja Juz.在作物生长期内,从植株初期到成熟期,对总生物量进行了测量。不过,这项建议不仅涉及截获的光合有效辐射量所积累的总生物量,还考虑到了桑利呼吸法的呼吸损失。这项研究表明,RUE 并不是一个恒定值,因为呼吸过程会导致 RUE 值随时间以非线性方式变化。通过内插法进行的每日 RUE 模拟显示,从萌发到周期结束,RUE 值变化很大。这表明在整个生长期假设 RUE 值恒定是错误的,特别是在评估其对作物整个生长发育周期的生理影响时。
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引用次数: 0
The Potato Association of America 107th Annual Business Meeting July 23, 2023, 1:30– 3:30 pm MT Delta Prince Edward Island Ash Room 美国马铃薯协会第 107 届商务年会 2023 年 7 月 23 日下午 1:30-3:30 MT Delta 爱德华王子岛白蜡厅
IF 1.5 4区 农林科学 Q1 Agricultural and Biological Sciences Pub Date : 2024-03-22 DOI: 10.1007/s12230-024-09943-9
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引用次数: 0
Field Screening of Solanum demissum Confirms its late Blight Resistance in the Toluca Valley, Mexico 墨西哥托卢卡谷地对 Solanum demissum 的实地筛选证实了其对晚疫病的抗性
IF 1.5 4区 农林科学 Q1 Agricultural and Biological Sciences Pub Date : 2024-03-12 DOI: 10.1007/s12230-024-09945-7
Gabriela Díaz-García, Guillermo Andrés Enciso-Maldonado, Luis Antonio Díaz-García, Juan Porfirio Legaria-Solano, John Bamberg, Hector Lozoya-Saldaña

Late blight is a major threat to potato crops worldwide. Despite the host’s genetic improvements, continuous evolution of the pathogen and climate change makes it necessary to reconfirm genetic resistance sources. Solanum demissum has long been identified as a valuable source of late blight resistance genes. The aim of this study was to reevaluate S. demissum accessions for late blight resistance under natural infection in the Toluca Valley, México. Most of the accessions exhibited resistance, with minor variations between two consecutive growing seasons. Eighty three out of 94 accessions that were evaluated in both years were resistant, thirty-three accessions that were exposed to the pathogen for only one season were also resistant. However, a response variation was observed in some accessions. This research characterizes and reconfirms the resistance of S. demissum, providing information for breeding programs and optimizing the use of these genetic resources.

晚疫病是全球马铃薯作物的主要威胁。尽管宿主的基因有所改善,但病原体的不断进化和气候变化使得有必要重新确认抗病基因来源。Solanum demissum 长期以来一直被认为是抗晚疫病基因的宝贵来源。本研究的目的是重新评估墨西哥托卢卡谷(Toluca Valley)的去势茄(S. demissum)在自然感染情况下对晚疫病的抗性。大多数品种都表现出了抗性,只是在连续两个生长季节之间略有不同。在 94 个两年都接受评估的品种中,有 83 个具有抗性,有 33 个只在一个季节接触病原体的品种也具有抗性。不过,在一些品种中观察到了反应差异。这项研究描述并再次确认了 S. demissum 的抗性,为育种计划和优化利用这些遗传资源提供了信息。
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引用次数: 0
Screening Three Potato Cultivars for Resistance to Potato Virus Y Strains: Broad and Strain-Specific Sources of Resistance 筛选三种马铃薯栽培品种对马铃薯病毒 Y 株的抗性:广泛的抗性来源和特定菌株的抗性来源
IF 1.5 4区 农林科学 Q1 Agricultural and Biological Sciences Pub Date : 2024-03-08 DOI: 10.1007/s12230-024-09946-6
Cassandra N. Funke, Lisa T. Tran, Alexander V. Karasev

Three potato cultivars, Payette Russet, Dark Red Norland, and Chieftain were challenged with four strains of potato virus Y (PVY), PVYO, PVYEu−N, PVYN−Wi, and PVYNTN. Cultivars Dark Red Norland and Chieftain exhibited strain-specific, hypersensitive resistance to PVYO and PVYNTN strains.. These same two cultivars, Dark Red Norland and Chieftain, appeared to have an additional resistance source in their genomes providing partial resistance against PVYN−Wi but were found fully susceptible to the non-recombinant PVYEu−N strain. Payette Russet was found immune to the same four strains of PVY; PVYO, PVYEu−N, PVYN−Wi, and PVYNTN, and was additionally challenged with the total of 18 isolates of PVY representing 12 genetic variants of the virus from potato and non-potato solanaceous hosts. None of the 18 isolates of the virus was found able to replicate in the inoculated or upper non-inoculated leaves of Payette Russet, confirming the broad specificity of the Rysto gene present in the Payette Russet genome.

三个马铃薯栽培品种 Payette Russet、Dark Red Norland 和 Chieftain 分别受到四株马铃薯病毒 Y(PVY)、PVYO、PVYEu-N、PVYN-Wi 和 PVYNTN 的侵染。深红 Norland 和 Chieftain 两个品种对 PVYO 和 PVYNTN 株系表现出株系特异性的超敏抗性。这两个品种(Dark Red Norland 和 Chieftain)的基因组中似乎还有一个额外的抗性源,可部分抵抗 PVYN-Wi,但它们对非重组的 PVYEu-N 株系完全易感。Payette Russet 对同样的四株 PVY(PVYO、PVYEu-N、PYN-Wi 和 PVYNTN)具有免疫力,此外还受到来自马铃薯和非马铃薯茄科寄主的总共 18 个 PVY 病毒分离株(代表 12 种病毒基因变异)的挑战。18 个病毒分离株中没有一个能在接种或未接种的帕耶特甜菜叶片上部复制,这证实了帕耶特甜菜基因组中的 Rysto 基因具有广泛的特异性。
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引用次数: 0
Methodological Breakdown of Potato Peel’s Influence on Starch Digestibility, In Vitro Glycemic Response and Pasting Properties of Potato 马铃薯皮对马铃薯淀粉消化率、体外血糖反应和糊状特性的影响的方法分解
IF 1.5 4区 农林科学 Q1 Agricultural and Biological Sciences Pub Date : 2024-02-20 DOI: 10.1007/s12230-024-09942-w
Milan Kumar Lal, Rahul Kumar Tiwari, Awadhesh Kumar, Ravinder Kumar, Dharmendra Kumar, Arvind Jaiswal, Sushil Sudhakar Changan, Som Dutt, Jelena Popović-Djordjević, Brajesh Singh, Jesus Simal-Gandara

A Potato (Solanum tuberosum L.) is a major staple food consumed worldwide. Potato peel is an important constituent that is generally discarded and considered agricultural waste before processing or cooking. The present investigation is an attempt to utilize different contents of potato peels (PP) with potato flesh (PF) of processing cultivar (Kufri Chipsona 3) and table cultivar (Kufri Jyoti), which affect starch nutritional profile, glycemic response, and pasting properties. The combination of PP at different concentrations of 5, 10, and 15%, respectively, to PF showed a significant reduction (P < 0.05) in starch hydrolysis index (SHI), glycemic index (GI), and glycemic load (GL). Similarly, there was also a significant increase in the resistant starch content of the PP + PF combination. The maximum change in the predicted glycemic response was observed in the PP with 15%. A higher reduction in the in vitro glycemic response was observed in the Kufri Chipsona 3 as compared to Kufri Jyoti. The pasting properties of also showed significant changes with the addition of PP to the PF flour, which might be due to the change in intrinsic properties such as amylose and amylopectin content. The current investigation will help to provide an understanding of the use of PP in the processing industries to prepare low-GI food products.

马铃薯(Solanum tuberosum L.)是全世界消费的主要主食。马铃薯皮是一种重要成分,通常在加工或烹饪前被丢弃,被视为农业废弃物。本研究试图利用马铃薯皮(PP)与加工栽培品种(Kufri Chipsona 3)和食用栽培品种(Kufri Jyoti)的马铃薯肉(PF)的不同含量来影响淀粉营养成分、血糖反应和糊化性能。淀粉水解指数(SHI)、血糖生成指数(GI)和血糖负荷(GL)显著降低(P < 0.05)。同样,PP + PF 组合的抗性淀粉含量也显著增加。预测血糖反应的最大变化出现在含 15%抗性淀粉的 PP 中。与 Kufri Jyoti 相比,Kufri Chipsona 3 的体外血糖反应降低幅度更大。在 PF 面粉中添加 PP 后,粘贴特性也发生了显著变化,这可能是由于淀粉和直链淀粉含量等内在特性发生了变化。目前的研究将有助于了解聚丙烯在加工业中的应用,以制备低 GI 食品。
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引用次数: 0
Advancing Nematode Identification on Potato: An Isothermal Recombinase Polymerase Amplification Assay for Stubby Root Nematode, Paratrichodorus allius 推进马铃薯线虫鉴定:茎根线虫 Paratrichodorus allius 的等温重组聚合酶扩增试验
IF 1.5 4区 农林科学 Q1 Agricultural and Biological Sciences Pub Date : 2023-12-29 DOI: 10.1007/s12230-023-09940-4
Mankanwal Goraya, Guiping Yan, Jonathan Whitworth, Kylie Swisher Grimm

The stubby root nematode, Paratrichodorus allius, is an important plant-parasitic nematode that feeds on plant roots and transmits Tobacco rattle virus to potato. Identification of P. allius based on morphometric measurements requires taxonomic knowledge, while previously developed molecular techniques require a well-equipped laboratory. A new recombinase polymerase amplification (RPA) assay was developed in this study, which requires minimal sample preparation, low temperature (37–42 °C), and short time duration (20–40 min) for detection of P. allius. RPA primers were designed targeting the internal transcribed spacer (ITS) region, and conditions were optimized to amplify DNA at 40 °C in 20 min. RPA products were visualized using agarose gel electrophoresis and SYBR Green I dye. In-silico analysis was conducted to predict the primer specificity. The RPA assay was specific to P. allius only. Detection sensitivity of the agarose gel electrophoresis-based RPA assay was 1/4th portion of a single nematode, and a single nematode by the SYBR Green I-based assay. This assay was validated with P. allius infested potato fields. The developed RPA assay can serve as an efficient tool for rapidly detecting P. allius from infested potato fields to help growers with their management decisions.

粗壮根线虫(Paratrichodorus allius)是一种重要的植物寄生线虫,以植物根部为食,并将烟草纹枯病病毒传播给马铃薯。根据形态测量鉴定 P. allius 需要分类学知识,而以前开发的分子技术则需要设备齐全的实验室。本研究开发了一种新的重组酶聚合酶扩增(RPA)测定法,只需极少的样品制备、低温(37-42 °C)和短时间(20-40 分钟)即可检测 P. allius。设计了针对内部转录间隔区(ITS)的 RPA 引物,并优化了在 40 °C、20 分钟内扩增 DNA 的条件。使用琼脂糖凝胶电泳和 SYBR Green I 染料观察 RPA 产物。为预测引物的特异性,进行了室内分析。RPA 检测仅对 P. allius 具有特异性。基于琼脂糖凝胶电泳的 RPA 检测灵敏度为单条线虫的 1/4,而基于 SYBR Green I 的检测灵敏度为单条线虫的 1/4。该检测方法已在受 P. allius 侵染的马铃薯田中得到验证。所开发的 RPA 检测方法可作为一种有效的工具,用于快速检测受侵染马铃薯田中的 P. allius,从而帮助种植者做出管理决策。
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引用次数: 0
Brodie, a Dual-Purpose Chipping and Tablestock Variety with Resistance to Pathotypes Ro1 and Ro2 of the Golden Cyst Nematode and Partial Resistance to Pathotype Pa2/3 of the Pale Cyst Nematode 布罗迪(Brodie),一种抗金色囊线虫病原型 Ro1 和 Ro2 以及部分抗苍白囊线虫病原型 Pa2/3 的削片和家畜两用品种
IF 1.5 4区 农林科学 Q1 Agricultural and Biological Sciences Pub Date : 2023-12-29 DOI: 10.1007/s12230-023-09939-x

Abstract

Brodie is a high-yielding white-fleshed potato cultivar with resistance to both pathotypes Ro1 and Ro2 of the golden cyst nematode (Globodera rostochiensis) and partial resistance to pathotype Pa2/3 of the pale cyst nematode (G. pallida). It was selected from a cross made at Cornell University in 1998 between Cornell breeding clones NY121 and NY115 and released by the New York Agricultural Experiment Station in 2018. The tubers are oval and slightly flattened, with shallow eyes and smooth attractive skin. In addition to its suitability for tablestock, Brodie also has merit for chipping as its chip color is good, comparable in lightness to the chipping cultivar Snowden when chipped out of two to four months of 6.7 °C storage. Specific gravity of Brodie averaged 1.078 across 63 Northeastern US trials, 0.010 less than Atlantic in the same locations, while marketable yield averaged 115% of Atlantic across 70 trials in New York and Pennsylvania. For growers affected by pathotypes Ro1 and Ro2 of the golden nematode, Brodie provides a means of producing a marketable crop while simultaneously decreasing infestation levels of both Ro1 and Ro2.

摘要 Brodie是一个高产白肉马铃薯栽培品种,对金色胞囊线虫(Globodera rostochiensis)的病原型Ro1和Ro2均具有抗性,对苍白胞囊线虫(G. pallida)的病原型Pa2/3具有部分抗性。它选自康奈尔大学 1998 年在康奈尔育种克隆 NY121 和 NY115 之间进行的杂交,2018 年由纽约农业试验站发布。块茎呈椭圆形,略扁,眼浅,表皮光滑诱人。除了适合制表外,布罗迪还具有切片的优点,因为其切片色泽良好,在6.7 °C贮藏两到四个月后切片,其亮度可与切片栽培品种斯诺登媲美。在美国东北部的 63 个试验中,布罗迪的比重平均为 1.078,比同一地区的大西洋低 0.010,而在纽约和宾夕法尼亚州的 70 个试验中,其平均上市产量是大西洋的 115%。对于受金色线虫病原型 Ro1 和 Ro2 影响的种植者来说,Brodie 提供了一种既能生产适销作物,又能降低 Ro1 和 Ro2 侵染水平的方法。
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引用次数: 0
期刊
American Journal of Potato Research
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