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Molecular Docking and Spectroscopic Exploring of the Binding Intermolecular between BSA with Complex of Zirconium 牛血清白蛋白与锆配合物分子间结合的分子对接与光谱探索
IF 0.9 4区 化学 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-03-27 DOI: 10.1134/S1070363224612894
H. Dezhampanah, A. M. Moghaddam Pour

In this study, the mechanism of the binding interaction of Zr(CUR), a novel six-coordinate complex of zirconium with a curcumin ligand and bovine serum albumin (BSA), was elucidated via fluorescence spectroscopy, Fourier transform infrared spectroscopy and molecular modeling methods. The analysis indicated that Zr(CUR) could effectively quench the endogenous fluorescence of BSA, forming a 1 : 1 complex with a static quenching mechanism. The distance between the donor (BSA) and acceptor [Zr(CUR)] was determined to be 1.19 nm on the basis of Forester’s theory of nonradiative energy transfer. The results of the infrared absorption spectrum revealed that the secondary structure of BSA changed. The molecular docking results demonstrated that the Zr(CUR) with the minimum binding energy is at position IIIA. Furthermore, as shown by the docking study, Zr(CUR) has several hydrogen bonds and van der Waals contacts with BSA. The synchronous fluorescence and Fourier transform infrared spectroscopy data revealed that Zr(CUR) could lead to conformational changes in BSA, which could affect its biological functions.

本研究通过荧光光谱、傅立叶红外光谱和分子模拟等方法,研究了新型六坐标锆与姜黄素配体与牛血清白蛋白(BSA)的结合作用机制。分析表明,Zr(CUR)能有效猝灭BSA的内源荧光,形成1:1配合物,具有静态猝灭机制。根据Forester的非辐射能量传递理论,确定了供体(BSA)与受体[Zr(CUR)]之间的距离为1.19 nm。红外吸收光谱结果表明,牛血清白蛋白的二级结构发生了变化。分子对接结果表明,结合能最小的Zr(CUR)位于IIIA位置。此外,对接研究表明,Zr(CUR)与BSA具有多个氢键和范德华键。同步荧光和傅里叶变换红外光谱数据表明,Zr(CUR)可以引起牛血清白蛋白的构象变化,从而影响其生物学功能。
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引用次数: 0
Synthesis and Exploring Antiproliferative Activity of Some Pyrazole-Bearing Heterocycles: DFT, Molecular Docking, and ADME Study 含吡唑类杂环化合物的合成及抗增殖活性研究:DFT、分子对接和ADME研究
IF 0.9 4区 化学 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-03-27 DOI: 10.1134/S1070363225600134
S. K. Ramadan, S. M. Gomha, E. A. E. El-Helw

Worldwide, millions of people are impacted by cancer. In vitro antiproliferative activity of some pyrazole-bearing N-heterocycles was tested against HCT116 and MCF7 cancer cell lines, which showed the most efficacy of pyranoquinoline and chromene. Among molecular docking simulation towards cyclin-dependent kinase-2 (CDK2) protein, pyranoquinoline had the best docking, compared to doxorubicin and roscovitine (RRC), hinting at a possible mechanism of action (interactions with common amino acids). DFT simulation displayed unprecedented insights into these compounds' electronic properties and structure-activity relationships. Pyranoquinoline had the greatest softness and the lowest energy gap, increasing its reactivity to radical surface interactions. Compounds with notable antiproliferative activity were those with high electrophilicity values. Modeling pharmacokinetics simulation also revealed the ideal drug-likeness and oral bioavailability features of compounds. This research may aid in the creation of innovative, highly effective agents used in the battle against cancer and other infections in the future.

在世界范围内,数百万人受到癌症的影响。对几种含吡唑的n -杂环类化合物对HCT116和MCF7癌细胞的体外抑制活性进行了实验,其中吡诺喹啉和铬的抑制作用最强。在细胞周期蛋白依赖性激酶-2 (CDK2)蛋白的分子对接模拟中,与阿霉素和罗斯科维汀(RRC)相比,吡喃喹啉的对接效果最好,提示其可能的作用机制(与常见氨基酸相互作用)。DFT模拟显示了对这些化合物的电子性质和构效关系的前所未有的见解。吡诺喹啉具有最大的柔软性和最低的能隙,提高了其对自由基表面相互作用的反应性。具有显著抗增殖活性的化合物是那些具有高亲电性值的化合物。模型药代动力学模拟也揭示了化合物理想的药物相似性和口服生物利用度特征。这项研究可能有助于创造出创新的、高效的药物,用于未来对抗癌症和其他感染。
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引用次数: 0
Sulfonated Biochar Derived from Eucalyptus Bark as Natural Catalyst in the Biginelli Reaction 桉树皮磺化生物炭作为Biginelli反应的天然催化剂
IF 0.9 4区 化学 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-03-27 DOI: 10.1134/S1070363224613048
K. Bouafina, F. Belferdi, F. Bouremmad

The Biginelli products (dihydropyrimidines) and their derivatives are among the most abundant types of organic compounds. They are widely used in a wide range of therapeutic applications. In this work, the Biginelli reaction was carried out in the presence of sulfonated biochar derived from eucalyptus bark as an eco-freindly natural catalyst. The catalyst was characterized by XRD, FTIR and SEM/EDS techniques. The study also relates to the effects of some parameters on the yield and kinetics of the reaction, the effects of catalyst amount, temperature, catalyst regeneration and introduction order of reagents. High yields, short time, recyclability of the catalyst, simple product isolation are the noteworthy aspects of this protocol.

Biginelli产物(二氢嘧啶)及其衍生物是最丰富的有机化合物类型之一。它们被广泛应用于各种治疗应用。在这项工作中,Biginelli反应是在桉树树皮衍生的磺化生物炭作为环保天然催化剂的情况下进行的。采用XRD、FTIR、SEM/EDS等技术对催化剂进行了表征。研究还涉及了一些参数对反应产率和动力学的影响,催化剂用量、温度、催化剂再生和试剂引入顺序的影响。收率高、时间短、催化剂可回收、产物分离简单是该工艺值得注意的方面。
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引用次数: 0
Targeted Breast Cancer Combat: The Pioneering Role of Hesperidin-Infused pH and Thermosensitive Nanoparticles 靶向乳腺癌的战斗:橙皮苷注入pH和热敏纳米颗粒的先锋作用
IF 0.9 4区 化学 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-03-27 DOI: 10.1134/S1070363224611864
E. Küçük, M. Yıldırım, Ö. Acet, V. Karakoç, S. Yalın

This study aimed to improve the bioavailability and increase the therapeutic efficacy of Hes against breast cancer by using pH and temperature-sensitive smart polymeric nanoparticles. Poly(2-hydroxyethyl methacrylate) (pHEMA) is a synthetic polymer composed of HEMA monomers, suitable for medical applications due to its biocompatibility and cytocompatibility. Vinyl imidazole and poly(N-isopropylacrylamide) copolymers were used to impart pH sensitivity and temperature-sensitive properties to the pHEMA polymer, respectively. Both non-loaded and hesperidin-loaded smart nanoparticles (HesSNPs) were characterized by FTIR. The particle size and size distribution of HesSNPs were determined by dynamic light scattering analysis. Scanning electron microscopy was used to determine morphological characterization. Additionally, the effects of HesSNPs on cell proliferation, apoptosis, and cell cycle in breast cancer were also examined. The MTT assay was used to evaluate the cytotoxic effects of HesSNPs on MCF-7 cells at different concentrations (10–20 µM) for 24 h. It was found that MCF-7 cell proliferation in HesSNPs-1, HesSNPs-2, HesSNPs-3, and free hesperidin group decreased statistically significantly compared to the control group, depending on the dose (p < 0.05). The apoptotic effect was examined with the Annexin V-PI Staining Method in flow cytometry. The increase in the rate of apoptosis cells in the experimental groups was found to be statistically significant compared to the control group. Furthermore, it was determined that the nanoparticles induced apoptosis and increased the number of cells arrested in the G1 phase of the cell cycle.

本研究旨在通过使用pH和温度敏感的智能聚合物纳米颗粒来提高Hes对乳腺癌的生物利用度和治疗效果。聚(2-羟乙基甲基丙烯酸酯)(pHEMA)是一种由HEMA单体组成的合成聚合物,由于其生物相容性和细胞相容性而适用于医疗应用。乙烯基咪唑和聚n -异丙基丙烯酰胺共聚物分别赋予pHEMA聚合物pH敏感性和温度敏感性。用红外光谱对未负载和负载橙皮苷的智能纳米粒子(HesSNPs)进行了表征。通过动态光散射分析确定了HesSNPs的粒径和粒径分布。用扫描电镜观察其形态特征。此外,我们还研究了HesSNPs对乳腺癌细胞增殖、凋亡和细胞周期的影响。MTT法评价不同浓度(10-20µM) HesSNPs对MCF-7细胞的细胞毒作用,结果发现,与对照组相比,HesSNPs-1、HesSNPs-2、HesSNPs-3和游离柑皮苷组MCF-7细胞增殖能力随剂量的不同而显著降低(p <;0.05)。流式细胞术Annexin V-PI染色法检测其凋亡作用。与对照组相比,实验组细胞凋亡率的增加有统计学意义。此外,我们确定纳米颗粒诱导细胞凋亡,并增加细胞周期G1期的细胞数量。
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引用次数: 0
Design, Synthesis, and Activity Evaluation of Endogenous Hydrogen Sulfide Inhibitor of MRSA 内源性MRSA硫化氢抑制剂的设计、合成及活性评价
IF 0.9 4区 化学 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-03-27 DOI: 10.1134/S1070363224612638
W. F. He, J. X. Wang, P. Y. Gao, D. Q. Li, H. Jin, C. F. Liu, X. G. Liu

Eighteen indole target compounds were synthesized from 3-(6-bromo-3-indolyl)propionic acid. The chemical structures were determined by 1H NMR, 13C NMR, and HRMS. Bioactivity assays revealed that 3-(6-bromo-3-indolyl)-N-(3-fluorophenyl)propenamide exhibited the most potent inhibitory effect on methicillin-resistant Staphylococcus aureus (MRSA) endogenous H2S at a concentration of 40 μM, with an inhibitory rate of 80.2±0.92%. The results of antibacterial experiments showed that co-administering partial target compounds with oxacillin sodium reduced the minimum inhibitory concentration (MIC) and minimum bactericidal concentration (MBC) of MRSA by 50% when compared to oxacillin sodium alone. Further studies revealed that the synergistic antimicrobial mechanism is closely related to the Fenton reaction. The results of the cytotoxicity assay showed that 3-(6-bromo-3-indolyl)-N-(4-chlorobenzyl)propenamide had the least inhibitory effect on BEAS-2B cells. The experimental results of this study may provide references and ideas for the treatment of MRSA infection.

以3-(6-溴-3-吲哚基)丙酸为原料合成了18个吲哚靶化合物。化学结构通过1H NMR、13C NMR和HRMS测定。生物活性测定表明,3-(6-溴-3-吲哚基)- n-(3-氟苯基)丙烯酰胺在40 μM浓度下对耐甲氧西林金黄色葡萄球菌(MRSA)内源性H2S的抑制作用最强,抑制率为80.2±0.92%。抗菌实验结果表明,部分目标化合物与oxacillin钠共给药,MRSA的最低抑菌浓度(MIC)和最低杀菌浓度(MBC)比单独给药降低50%。进一步研究表明,协同抗菌机制与Fenton反应密切相关。细胞毒性实验结果显示,3-(6-溴-3-吲哚基)- n -(4-氯苯基)丙烯酰胺对BEAS-2B细胞的抑制作用最小。本研究的实验结果可为MRSA感染的治疗提供参考和思路。
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引用次数: 0
Design, Synthesis, Antifungal, and Nematocidal Activities of Novel Pyrimidine Derivatives Incorporating an 1,1,2-Trifluoro-1-butene Moiety 含有1,1,2-三氟-1-丁烯片段的新型嘧啶衍生物的设计、合成、抗真菌和杀线虫活性
IF 0.9 4区 化学 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-03-26 DOI: 10.1134/S107036322461264X
Yan-Ling Ren, Ling-Ling Xiao, Tao Wang, Hai-Yan Wang, Shou-Mei Wan, Lu Yu, Pei Li

In this study, a series of novel pyrimidine derivatives incorporating an 1,1,2-trifluoro-1-butene moiety were synthesized and their structures were confirmed by 1H NMR, 13C NMR, and HRMS. The bioassay results demonstrate that 4-methyl-2-[(3,4,4-trifluorobut-3-en-1-yl)thio]-6-(trifluoromethyl)pyrimidine exhibits comparable in vitro antifungal activity against Aspergillus niger (64.55 and 48.85%, respectively) at concentrations of 100 and 50 μg/mL when compared to Prochloraz. Additionally, 4-methyl-2-[(3,4,4-trifluorobut-3-en-1-yl)sulfonyl]-6-(trifluoromethyl)pyrimidine demonstrates superior nematocidal activity against Caenorhabditis elegans at concentrations of 100 and 50 μg/mL after 48 h with corrected mortality rates of 89.65 and 79.47%, respectively, surpassing those observed for ethoprophos. To the best of our knowledge, this study presents the first report on the synthesis and antifungal and nematocidal activities of novel pyrimidine derivatives incorporating an 1,1,2-trifluoro-1-butene moiety.

本研究合成了一系列含有1,1,2-三氟-1-丁烯片段的新型嘧啶衍生物,并通过1H NMR、13C NMR和HRMS对其结构进行了确证。生物实验结果表明,4-甲基-2-[(3,4,4-三氟丁-3-烯-1-基)硫]-6-(三氟甲基)嘧啶在100和50 μg/mL浓度下对黑曲霉的体外抑菌活性(分别为64.55%和48.85%)与丙氯嗪相当。此外,4-甲基-2-[(3,4,4-三氟丁-3-烯-1-基)磺酰]-6-(三氟甲基)嘧啶在浓度为100和50 μg/mL时对秀丽隐杆线虫具有较强的杀线虫活性,48 h后校正死亡率分别为89.65%和79.47%,超过乙硫磷。据我们所知,本研究首次报道了含有1,1,2-三氟-1-丁烯片段的新型嘧啶衍生物的合成及其抗真菌和杀线虫活性。
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引用次数: 0
Microwave-Assisted Facile Synthesis of 1,2-Benzisoxazoles, Isoxazoloquinolines, and Isothiazoloquinolines in [BMIM(SO2Cl)][OTs] Ionic Liquid as a Recyclable System [BMIM(SO2Cl)][OTs]离子液体中微波辅助快速合成1,2-苯并异恶唑、异恶唑喹啉和异噻唑喹啉
IF 0.9 4区 化学 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-03-26 DOI: 10.1134/S1070363224611943
I. Jamadar, R. B. Manami, S. Kurahatti, A. Anchi, V. Jadhav, R. G. Kalkhambkar, M. Kurkuri, M. S. Refat, A. M. Alsuhaibani

A green method of the synthesis of 1,2-benzisoxazole, isoxazolo- and isothiazolo-quinoline from 2-hydroxyaryl ketoximes in the presence of [BMIM(SO2Cl)][OTs] ionic liquid has been demonstrated under microwave irradiation. The noticeable advantages of this method over other reported methods are less reaction time, simple work-up procedure and excellent yields (85–96%). The method also highlights the reuse and recycle of ionic liquid employed (up to four cycles) with negligible loss of yield.

研究了在[BMIM(SO2Cl)][OTs]离子液体存在下,微波辐射下由2-羟基酮肟合成1,2-苯并异恶唑、异恶唑和异噻唑喹啉的绿色方法。与其他已报道的方法相比,该方法的显著优点是反应时间短,工序简单,收率高(85-96%)。该方法还强调了离子液体的再利用和再循环(多达四个循环),而产量的损失可以忽略不计。
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引用次数: 0
Experimental and Theoretical Studies for Noncovalent Interactions Analysis of 2-Mercaptopyrimidine Derivative and Their Antimicrobial Activities 2-巯基嘧啶衍生物非共价相互作用分析及其抗菌活性的实验与理论研究
IF 0.9 4区 化学 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-03-26 DOI: 10.1134/S1070363224611773
A. Jaiswal, M. Mishra, J. Singh, R. K. Upadhyay, A. K. Pal, R. Kumar

Here, we have synthesized the 2-mercaptopyrimidine derivative for noncovalent interactions and their antimicrobial activities. The non-covalent interactions have been carried out by crystallographic studies, revealed that it showed different interactions such as C–H∙∙∙N, C–H∙∙∙S and S∙∙∙π. Further, these intermolecular interactions have also been quantified by Hirshfeld surface analysis, and NIC calculation. Chimera 1.17.3 software is used for molecular docking studies with (protein ID: 1JIJ) and Discovery Studio is used for analyzing the docking results. The in vitro antifungal activity has been done against two fungal strains (C. albicans and A. niger) and antimicrobial activity has been done against two strains (S. aureus and P. aeruginosa).

在这里,我们合成了2-巯基嘧啶衍生物的非共价相互作用及其抗菌活性。非共价相互作用通过晶体学研究进行,揭示其表现出不同的相互作用,如C-H∙∙∙N、C-H∙∙S和S∙∙π。此外,这些分子间相互作用也被Hirshfeld表面分析和NIC计算量化。使用Chimera 1.17.3软件与(蛋白ID: 1JIJ)进行分子对接研究,使用Discovery Studio对对接结果进行分析。对两株真菌(白色念珠菌和黑孢杆菌)和两株真菌(金黄色葡萄球菌和铜绿假单胞菌)进行了体外抑菌活性研究。
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引用次数: 0
Tripodal Tricarboxylic Acids on the Triphenylphosphine Oxide Platform 氧化三苯基膦平台上的三足三羧酸
IF 0.9 4区 化学 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-03-26 DOI: 10.1134/S1070363224612043
T. V. Baulina, I. Yu. Kudryavtsev, M. P. Pasechnik, A. G. Matveeva, A. V. Vologzhanina, V. K. Brel

New tripodal tricarboxylic acids on the triphenylphosphine oxide platform [2-HO(O)C(CH2)nOC6H4]3PO with different linker length (n = 1, 3) have been prepared. Their composition and structure have been determined by elemental analysis, IR and multinuclear (1H, 13C, 31P) NMR spectroscopy, and X-ray diffraction analysis. The complexes of the tripodal ligands with La(III) have been prepared; their composition and structure have been investigated by means of elemental analysis and IR spectroscopy.

在三苯基氧化膦平台[2-HO(O)C(CH2) no6h4]3PO上制备了不同连接体长度(n = 1,3)的新型三羧酸。通过元素分析、红外和多核(1H, 13C, 31P)核磁共振光谱和x射线衍射分析确定了它们的组成和结构。制备了三足配体与La(III)的配合物;用元素分析和红外光谱研究了它们的组成和结构。
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引用次数: 0
Tetrakis-benzimidazoles as Tetradentate to Octadentate Ligands: Their Properties, Applications, and Metal Complexes (A Review) 四聚苯并咪唑作为四齿到八齿配体:性质、应用和金属配合物(综述)
IF 0.9 4区 化学 Q4 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2025-03-26 DOI: 10.1134/S107036322461216X
A. Tavman

Tetrakis-benzimidazoles are tetrapodal compounds with multidentate ligand properties, including at least tetradentate provided by the C=N nitrogen atoms in each benzimidazole unit, and they can be obtained in their many derivatives. There are also tetrakis-benzimidazole derivatives that contain atoms such as N and O in the bridge units and thus exhibit various donor properties up to octadentate. Because of these properties, they are similar to EDTA (ethylenediamminetetraacetic acid) which is a medication used in the management and treatment of heavy metal toxicity, and attract the attention of researchers. The applications of tetrakis-benzimidazole derivatives and various metal complexes in many fields such as corrosion inhibitor, catalyst, enzyme inhibitor, superoxide dismutase, catalase activity, superoxide oxidase, DNA affinity, determination of H2O2, were investigated. In this study, a comprehensive review was conducted on tetrakis-benzimidazoles: their synthesis routes, properties, various metal complexes, features and application areas have been reviewed and compiled in order to be useful for researchers who will work in this field.

四合苯并咪唑是具有多齿配体性质的四脚化合物,包括每个苯并咪唑单元中的C=N氮原子所提供的至少四齿,并且它们可以在其许多衍生物中得到。也有四合苯并咪唑衍生物在桥单元中含有N和O等原子,因此表现出各种供体性质,直至八齿齿。由于这些性质,它们与用于重金属中毒管理和治疗的药物EDTA(乙二胺四乙酸)相似,引起了研究者的关注。考察了四联苯并咪唑衍生物及各种金属配合物在缓蚀剂、催化剂、酶抑制剂、超氧化物歧化酶、过氧化氢酶活性、超氧化物氧化酶、DNA亲和力、H2O2测定等领域的应用。本文对四联苯并咪唑的合成路线、性质、各种金属配合物、特点及应用领域进行了综述,以期为今后的研究人员提供参考。
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引用次数: 0
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Russian Journal of General Chemistry
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