首页 > 最新文献

Animal Cells and Systems最新文献

英文 中文
The impact of MEIS1 TALE homeodomain transcription factor knockdown on glioma stem cell growth. MEIS1 TALE同源转录因子敲除对胶质瘤干细胞生长的影响
IF 2.9 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-03-13 eCollection Date: 2024-01-01 DOI: 10.1080/19768354.2024.2327340
Hyun-Jin Kim, Don Carlo Batara, Young-Jun Jeon, Seongsoo Lee, Samuel Beck, Sung-Hak Kim

Myeloid ecotropic virus insertion site 1 (MEIS1) is a HOX co-factor necessary for organ development and normal hematopoiesis. Recently, MEIS1 has been linked to the development and progression of various cancers. However, its role in gliomagenesis particularly on glioma stem cells (GSCs) remains unclear. Here, we demonstrate that MEIS1 is highly upregulated in GSCs compared to normal, and glioma cells and to its differentiated counterparts. Inhibition of MEIS1 expression by shRNA significantly reduced GSC growth in both in vitro and in vivo experiments. On the other hand, integrated transcriptomics analyses of glioma datasets revealed that MEIS1 expression is correlated to cell cycle-related genes. Clinical data analysis revealed that MEIS1 expression is elevated in high-grade gliomas, and patients with high MEIS1 levels have poorer overall survival outcomes. The findings suggest that MEIS1 is a prognostic biomarker for glioma patients and a possible target for developing novel therapeutic strategies against GBM.

髓系生态病毒插入位点1(MEIS1)是器官发育和正常造血所必需的HOX辅助因子。最近,MEIS1 与多种癌症的发生和发展有关。然而,它在胶质瘤发生中的作用,尤其是对胶质瘤干细胞(GSCs)的作用仍不清楚。在这里,我们证明了与正常细胞和胶质瘤细胞相比,MEIS1在胶质瘤干细胞及其分化的对应细胞中高度上调。在体外和体内实验中,通过 shRNA 抑制 MEIS1 的表达可显著降低 GSC 的生长。另一方面,胶质瘤数据集的综合转录组学分析表明,MEIS1的表达与细胞周期相关基因有关。临床数据分析显示,MEIS1在高级别胶质瘤中表达升高,MEIS1水平高的患者总生存率较低。研究结果表明,MEIS1是胶质瘤患者的预后生物标志物,也是开发针对GBM的新型治疗策略的可能靶点。
{"title":"The impact of <i>MEIS1</i> TALE homeodomain transcription factor knockdown on glioma stem cell growth.","authors":"Hyun-Jin Kim, Don Carlo Batara, Young-Jun Jeon, Seongsoo Lee, Samuel Beck, Sung-Hak Kim","doi":"10.1080/19768354.2024.2327340","DOIUrl":"10.1080/19768354.2024.2327340","url":null,"abstract":"<p><p>Myeloid ecotropic virus insertion site 1 (<i>MEIS1</i>) is a HOX co-factor necessary for organ development and normal hematopoiesis. Recently, <i>MEIS1</i> has been linked to the development and progression of various cancers. However, its role in gliomagenesis particularly on glioma stem cells (GSCs) remains unclear. Here, we demonstrate that <i>MEIS1</i> is highly upregulated in GSCs compared to normal, and glioma cells and to its differentiated counterparts. Inhibition of <i>MEIS1</i> expression by shRNA significantly reduced GSC growth in both <i>in vitro</i> and <i>in vivo</i> experiments. On the other hand, integrated transcriptomics analyses of glioma datasets revealed that <i>MEIS1</i> expression is correlated to cell cycle-related genes. Clinical data analysis revealed that <i>MEIS1</i> expression is elevated in high-grade gliomas, and patients with high <i>MEIS1</i> levels have poorer overall survival outcomes. The findings suggest that <i>MEIS1</i> is a prognostic biomarker for glioma patients and a possible target for developing novel therapeutic strategies against GBM.</p>","PeriodicalId":7804,"journal":{"name":"Animal Cells and Systems","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10939110/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140130558","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Factors affecting the cleavage efficiency of the CRISPR-Cas9 system. 影响 CRISPR-Cas9 系统切割效率的因素。
IF 2.9 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-03-03 eCollection Date: 2024-01-01 DOI: 10.1080/19768354.2024.2322054
Won Jun Jung, Soo-Ji Park, Seongkwang Cha, Kyoungmi Kim

The CRISPR-Cas system stands out as a promising genome editing tool due to its cost-effectiveness and time efficiency compared to other methods. This system has tremendous potential for treating various diseases, including genetic disorders and cancer, and promotes therapeutic research for a wide range of genetic diseases. Additionally, the CRISPR-Cas system simplifies the generation of animal models, offering a more accessible alternative to traditional methods. The CRISPR-Cas9 system can be used to cleave target DNA strands that need to be corrected, causing double-strand breaks (DSBs). DNA with DSBs can then be recovered by the DNA repair pathway that the CRISPR-Cas9 system uses to edit target gene sequences. High cleavage efficiency of the CRISPR-Cas9 system is thus imperative for effective gene editing. Herein, we explore several factors affecting the cleavage efficiency of the CRISPR-Cas9 system. These factors include the GC content of the protospacer-adjacent motif (PAM) proximal and distal regions, single-guide RNA (sgRNA) properties, and chromatin state. These considerations contribute to the efficiency of genome editing.

与其他方法相比,CRISPR-Cas 系统具有成本效益和时间效率高的特点,是一种前景广阔的基因组编辑工具。该系统在治疗包括遗传性疾病和癌症在内的各种疾病方面具有巨大潜力,并促进了对各种遗传性疾病的治疗研究。此外,CRISPR-Cas 系统还简化了动物模型的制作过程,为传统方法提供了更方便的替代方案。CRISPR-Cas9 系统可用于裂解需要校正的目标 DNA 链,造成双链断裂(DSB)。然后,带有 DSB 的 DNA 可以通过 CRISPR-Cas9 系统用于编辑目标基因序列的 DNA 修复途径恢复。因此,CRISPR-Cas9 系统的高切割效率是有效基因编辑的必要条件。在这里,我们探讨了影响CRISPR-Cas9系统裂解效率的几个因素。这些因素包括原位相邻基序(PAM)近端和远端区域的 GC 含量、单导向 RNA(sgRNA)特性和染色质状态。这些因素都有助于提高基因组编辑的效率。
{"title":"Factors affecting the cleavage efficiency of the CRISPR-Cas9 system.","authors":"Won Jun Jung, Soo-Ji Park, Seongkwang Cha, Kyoungmi Kim","doi":"10.1080/19768354.2024.2322054","DOIUrl":"10.1080/19768354.2024.2322054","url":null,"abstract":"<p><p>The CRISPR-Cas system stands out as a promising genome editing tool due to its cost-effectiveness and time efficiency compared to other methods. This system has tremendous potential for treating various diseases, including genetic disorders and cancer, and promotes therapeutic research for a wide range of genetic diseases. Additionally, the CRISPR-Cas system simplifies the generation of animal models, offering a more accessible alternative to traditional methods. The CRISPR-Cas9 system can be used to cleave target DNA strands that need to be corrected, causing double-strand breaks (DSBs). DNA with DSBs can then be recovered by the DNA repair pathway that the CRISPR-Cas9 system uses to edit target gene sequences. High cleavage efficiency of the CRISPR-Cas9 system is thus imperative for effective gene editing. Herein, we explore several factors affecting the cleavage efficiency of the CRISPR-Cas9 system. These factors include the GC content of the protospacer-adjacent motif (PAM) proximal and distal regions, single-guide RNA (sgRNA) properties, and chromatin state. These considerations contribute to the efficiency of genome editing.</p>","PeriodicalId":7804,"journal":{"name":"Animal Cells and Systems","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-03-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10911232/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140027187","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Inducing aortic aneurysm/dissection in zebrafish: evaluating the efficacy of β-Aminopropionic Nitrile as a model 诱发斑马鱼主动脉瘤/夹层:评估β-氨基丙腈作为模型的功效
IF 2.9 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-03-01 DOI: 10.1080/19768354.2024.2322055
Jiarui Zhang, Yaowen Liang, Weiyue Zeng, Xiaoyan Gao, Dingchen Wang, Cong Mai, Zhuoheng Lin, Haishan Zhao, Xin Li
Aortic aneurysm/dissection (AAD) poses a life-threatening cardiovascular emergency with complex mechanisms and a notably high mortality rate. Zebrafish (Danio rerio) serve as valuable models for AA...
主动脉瘤/夹层(AAD)是一种危及生命的心血管急症,其发病机制复杂,死亡率极高。斑马鱼(Danio rerio)是研究主动脉瘤的重要模型...
{"title":"Inducing aortic aneurysm/dissection in zebrafish: evaluating the efficacy of β-Aminopropionic Nitrile as a model","authors":"Jiarui Zhang, Yaowen Liang, Weiyue Zeng, Xiaoyan Gao, Dingchen Wang, Cong Mai, Zhuoheng Lin, Haishan Zhao, Xin Li","doi":"10.1080/19768354.2024.2322055","DOIUrl":"https://doi.org/10.1080/19768354.2024.2322055","url":null,"abstract":"Aortic aneurysm/dissection (AAD) poses a life-threatening cardiovascular emergency with complex mechanisms and a notably high mortality rate. Zebrafish (Danio rerio) serve as valuable models for AA...","PeriodicalId":7804,"journal":{"name":"Animal Cells and Systems","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140016633","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Transcriptional corepressor activity of CtBP1 is regulated by ISG15 modification CtBP1 的转录核心抑制因子活性受 ISG15 修饰调节
IF 2.9 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-02-22 DOI: 10.1080/19768354.2024.2321354
Yun Hwan Lim, Yoon Jin Park, Jieun Lee, Jung Hwa Kim
C-terminal binding protein 1 (CtBP1) is a critical transcriptional corepressor of many tumor suppressor genes and plays diverse roles in the progression of cancers. The transcriptional repression f...
C-terminal binding protein 1(CtBP1)是许多肿瘤抑制基因的关键转录核心抑制因子,在癌症进展中发挥着多种作用。CtBP1的转录抑制作用可抑制...
{"title":"Transcriptional corepressor activity of CtBP1 is regulated by ISG15 modification","authors":"Yun Hwan Lim, Yoon Jin Park, Jieun Lee, Jung Hwa Kim","doi":"10.1080/19768354.2024.2321354","DOIUrl":"https://doi.org/10.1080/19768354.2024.2321354","url":null,"abstract":"C-terminal binding protein 1 (CtBP1) is a critical transcriptional corepressor of many tumor suppressor genes and plays diverse roles in the progression of cancers. The transcriptional repression f...","PeriodicalId":7804,"journal":{"name":"Animal Cells and Systems","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-02-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139921693","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Scoparone attenuates PD-L1 expression in human breast cancer cells by MKP-3 upregulation. 莨菪通过上调 MKP-3 减轻人乳腺癌细胞中 PD-L1 的表达。
IF 2.9 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-02-09 eCollection Date: 2024-01-01 DOI: 10.1080/19768354.2024.2315950
Seung-Woo Kim, Chan Woo Kim, Hong Seok Kim

Breast cancer is a frequently occurring malignant tumor that is one of the leading causes of cancer-related deaths in women worldwide. Monoclonal antibodies that block programed cell death 1 (PD-1)/programed cell death ligand 1 (PD-L1) - a typical immune checkpoint - are currently the recommended standard therapies for many advanced and metastatic tumors such as triple-negative breast cancer. However, some patients develop drug resistance, leading to unfavorable treatment outcomes. Therefore, other approaches are required for anticancer treatments, such as downregulation of PD-L1 expression and promotion of degradation of PD-L1. Scoparone (SCO) is a bioactive compound isolated from Artemisia capillaris that exhibits antitumor activity. However, the effect of SCO on PD-L1 expression in cancer has not been confirmed yet. This study aimed to evaluate the role of SCO in PD-L1 expression in breast cancer cells in vitro. Our results show that SCO downregulated PD-L1 expression in a dose-dependent manner, via AKT inhibition. Interestingly, SCO treatment did not alter PTEN expression, but increased the expression of mitogen-activated protein kinase phosphatase-3 (MKP-3). In addition, the SCO-induced decrease in PD-L1 expression was reversed by siRNA-mediated MKP-3 knockdown. Collectively, these findings suggest that SCO inhibited the expression of PD-L1 in breast cancer cells by upregulating MKP-3 expression. Therefore, SCO may serve as an innovative combinatorial agent for cancer immunotherapy.

乳腺癌是一种常见的恶性肿瘤,是全球女性因癌症死亡的主要原因之一。阻断程序性细胞死亡1(PD-1)/程序性细胞死亡配体1(PD-L1)--一种典型的免疫检查点--的单克隆抗体目前是许多晚期和转移性肿瘤(如三阴性乳腺癌)的推荐标准疗法。然而,一些患者会产生耐药性,导致治疗效果不佳。因此,抗癌治疗需要其他方法,如下调 PD-L1 的表达和促进 PD-L1 的降解。莨菪酮(SCO)是从茵陈蒿中分离出来的一种生物活性化合物,具有抗肿瘤活性。然而,SCO 对癌症中 PD-L1 表达的影响尚未得到证实。本研究旨在评估 SCO 在体外乳腺癌细胞 PD-L1 表达中的作用。结果显示,SCO 通过抑制 AKT 以剂量依赖的方式下调了 PD-L1 的表达。有趣的是,SCO 处理并未改变 PTEN 的表达,但却增加了丝裂原活化蛋白激酶磷酸酶-3(MKP-3)的表达。此外,siRNA 介导的 MKP-3 敲除可逆转 SCO 诱导的 PD-L1 表达下降。总之,这些研究结果表明,SCO 可通过上调 MKP-3 的表达来抑制乳腺癌细胞中 PD-L1 的表达。因此,SCO 可作为一种创新的癌症免疫疗法组合药物。
{"title":"Scoparone attenuates PD-L1 expression in human breast cancer cells by MKP-3 upregulation.","authors":"Seung-Woo Kim, Chan Woo Kim, Hong Seok Kim","doi":"10.1080/19768354.2024.2315950","DOIUrl":"10.1080/19768354.2024.2315950","url":null,"abstract":"<p><p>Breast cancer is a frequently occurring malignant tumor that is one of the leading causes of cancer-related deaths in women worldwide. Monoclonal antibodies that block programed cell death 1 (PD-1)/programed cell death ligand 1 (PD-L1) - a typical immune checkpoint - are currently the recommended standard therapies for many advanced and metastatic tumors such as triple-negative breast cancer. However, some patients develop drug resistance, leading to unfavorable treatment outcomes. Therefore, other approaches are required for anticancer treatments, such as downregulation of PD-L1 expression and promotion of degradation of PD-L1. Scoparone (SCO) is a bioactive compound isolated from <i>Artemisia capillaris</i> that exhibits antitumor activity. However, the effect of SCO on PD-L1 expression in cancer has not been confirmed yet. This study aimed to evaluate the role of SCO in PD-L1 expression in breast cancer cells in vitro. Our results show that SCO downregulated PD-L1 expression in a dose-dependent manner, via AKT inhibition. Interestingly, SCO treatment did not alter PTEN expression, but increased the expression of mitogen-activated protein kinase phosphatase-3 (MKP-3). In addition, the SCO-induced decrease in PD-L1 expression was reversed by siRNA-mediated MKP-3 knockdown. Collectively, these findings suggest that SCO inhibited the expression of PD-L1 in breast cancer cells by upregulating MKP-3 expression. Therefore, SCO may serve as an innovative combinatorial agent for cancer immunotherapy.</p>","PeriodicalId":7804,"journal":{"name":"Animal Cells and Systems","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-02-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10860470/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139721246","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The nasal lymphatic route of CSF outflow: implications for neurodegenerative disease diagnosis and monitoring. CSF 流出的鼻腔淋巴途径:对神经退行性疾病诊断和监测的影响。
IF 2.9 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-01-29 eCollection Date: 2024-01-01 DOI: 10.1080/19768354.2024.2307559
Jiwon Chae, Mina Choi, Juyoung Choi, Seung-Jun Yoo

Cerebrospinal fluid (CSF) plays a crucial role in the brain's lymphatics as it traverses the central nervous system (CNS). Its primary function is to facilitate the outward transport of waste. Among the various CSF outflow pathways, the route through the cribriform plate along the olfactory nerves stands out as the most predominant. This review describes the outflow pathway of CSF into the nasal lymphatics. Additionally, we examine existing studies to describe mutual influences observed between the brain and extracranial regions due to this outflow pathway. Notably, pathological conditions in the CNS often influence CSF outflow, leading to observable changes in extracranial regions. The established connection between the brain and the nose is significant, and our review underscores its potential relevance in monitoring CNS ailments, including neurodegenerative diseases. Considering that aging - the most significant risk factor for the onset of neurodegeneration - is also a principal factor in CSF turnover alterations, we suggest a novel approach to studying neurodegenerative diseases in therapeutic terms.

脑脊液(CSF)在大脑淋巴管中穿越中枢神经系统(CNS)时发挥着至关重要的作用。它的主要功能是促进废物外运。在 CSF 的各种流出路径中,沿嗅神经穿过楔形板的路径最为突出。本综述描述了 CSF 流入鼻腔淋巴管的流出途径。此外,我们还考察了现有的研究,以描述由于这一流出途径而在大脑和颅外区域之间观察到的相互影响。值得注意的是,中枢神经系统的病理状况往往会影响 CSF 的流出,从而导致颅外区域发生可观察到的变化。大脑和鼻子之间的联系非常重要,我们的综述强调了它在监测中枢神经系统疾病(包括神经退行性疾病)方面的潜在相关性。考虑到老龄化--神经退行性疾病发病的最主要风险因素--也是 CSF 循环改变的主要因素,我们提出了一种从治疗角度研究神经退行性疾病的新方法。
{"title":"The nasal lymphatic route of CSF outflow: implications for neurodegenerative disease diagnosis and monitoring.","authors":"Jiwon Chae, Mina Choi, Juyoung Choi, Seung-Jun Yoo","doi":"10.1080/19768354.2024.2307559","DOIUrl":"10.1080/19768354.2024.2307559","url":null,"abstract":"<p><p>Cerebrospinal fluid (CSF) plays a crucial role in the brain's lymphatics as it traverses the central nervous system (CNS). Its primary function is to facilitate the outward transport of waste. Among the various CSF outflow pathways, the route through the cribriform plate along the olfactory nerves stands out as the most predominant. This review describes the outflow pathway of CSF into the nasal lymphatics. Additionally, we examine existing studies to describe mutual influences observed between the brain and extracranial regions due to this outflow pathway. Notably, pathological conditions in the CNS often influence CSF outflow, leading to observable changes in extracranial regions. The established connection between the brain and the nose is significant, and our review underscores its potential relevance in monitoring CNS ailments, including neurodegenerative diseases. Considering that aging - the most significant risk factor for the onset of neurodegeneration - is also a principal factor in CSF turnover alterations, we suggest a novel approach to studying neurodegenerative diseases in therapeutic terms.</p>","PeriodicalId":7804,"journal":{"name":"Animal Cells and Systems","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10826790/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139641501","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dietary exposure of the water flea Daphnia galeata to microcystin-LR. 水蚤 Daphnia galeata 通过饮食接触微囊藻毒素-LR。
IF 2.9 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-01-29 eCollection Date: 2024-01-01 DOI: 10.1080/19768354.2024.2302529
Eun-Jeong Kim, Donggu Jeon, Yeon-Jeong Park, Hyunmin Woo, Seong-Il Eyun

Harmful substances like the cyanotoxin microcystin-leucine-arginine (MC-LR) are commonly found in eutrophic freshwater environments, posing risks to aquatic organisms. The water flea, Daphnia, is a well-established model organism for environmental toxicology research. Nevertheless, there is currently insufficient research on the genes that respond to MC-LR in Daphnia galeata. This study aimed to gain insights into the notable genes that react significantly to MC-LR. In this study, we generated an extensive RNA-Seq sequences isolated from the D. galeata HK strain, Han River in Korea. This strain was nourished with a diet of the green microalga Chlorella vulgaris and treated with pure MC-LR at a concentration of 36 ug/L. The transcriptome profile in response to the MC-LR treatment was obtained and 336 differentially expressed genes were subjected to Gene Ontology (GO) and euKaryotic Orthologous Groups of proteins analyses. GO enrichment analysis showed that chemical stimulus, amino sugar metabolic and catabolic process, oxidative stress, and detoxification were highly enriched, in reverse, proteolysis and fucosylation were underpresented. Detoxification process related genes such as peroxidase-like, chorion, and thyroid peroxidase-like were enriched for eliminating or neutralizing MC_LR from an organism's body. Furthermore, functional protein classification revealed an upregulation of lipid and inorganic ion transport processes, while amino acid and carbohydrate transport processes were found to be downregulated. These findings offer insights into how organisms respond to ecotoxic stimuli, providing valuable information for understanding adaptation or defense pathways.

富营养化淡水环境中普遍存在微囊藻毒素-亮氨酸-精氨酸(MC-LR)等有害物质,对水生生物造成危害。水蚤水蚤是环境毒理学研究的成熟模式生物。然而,目前有关水蚤对 MC-LR 反应基因的研究尚不充分。本研究旨在深入了解对 MC-LR 有显著反应的基因。在这项研究中,我们从韩国汉江的 D. galeata HK 品系中分离出大量 RNA-Seq 序列。该菌株以绿色微藻小球藻为食,并接受浓度为 36 微克/升的纯 MC-LR 处理。对 336 个差异表达基因进行了基因本体(GO)和 euKaryotic Orthologous Groups 蛋白质分析。GO富集分析表明,化学刺激、氨基酸糖代谢和分解代谢过程、氧化应激和解毒的富集程度较高,反之,蛋白水解和岩藻糖基化的富集程度较低。与解毒过程相关的基因,如过氧化物酶样、绒毛膜过氧化物酶样和甲状腺过氧化物酶样等,在消除或中和生物体内的 MC_LR 过程中得到了富集。此外,功能蛋白分类显示脂质和无机离子转运过程上调,而氨基酸和碳水化合物转运过程下调。这些发现深入揭示了生物如何应对生态毒性刺激,为了解适应或防御途径提供了宝贵的信息。
{"title":"Dietary exposure of the water flea <i>Daphnia galeata</i> to microcystin-LR.","authors":"Eun-Jeong Kim, Donggu Jeon, Yeon-Jeong Park, Hyunmin Woo, Seong-Il Eyun","doi":"10.1080/19768354.2024.2302529","DOIUrl":"10.1080/19768354.2024.2302529","url":null,"abstract":"<p><p>Harmful substances like the cyanotoxin microcystin-leucine-arginine (MC-LR) are commonly found in eutrophic freshwater environments, posing risks to aquatic organisms. The water flea, <i>Daphnia</i>, is a well-established model organism for environmental toxicology research. Nevertheless, there is currently insufficient research on the genes that respond to MC-LR in <i>Daphnia galeata</i>. This study aimed to gain insights into the notable genes that react significantly to MC-LR. In this study, we generated an extensive RNA-Seq sequences isolated from the <i>D</i>. <i>galeata</i> HK strain, Han River in Korea. This strain was nourished with a diet of the green microalga <i>Chlorella vulgaris</i> and treated with pure MC-LR at a concentration of 36 ug/L. The transcriptome profile in response to the MC-LR treatment was obtained and 336 differentially expressed genes were subjected to Gene Ontology (GO) and euKaryotic Orthologous Groups of proteins analyses. GO enrichment analysis showed that chemical stimulus, amino sugar metabolic and catabolic process, oxidative stress, and detoxification were highly enriched, in reverse, proteolysis and fucosylation were underpresented. Detoxification process related genes such as peroxidase-like, chorion, and thyroid peroxidase-like were enriched for eliminating or neutralizing MC_LR from an organism's body. Furthermore, functional protein classification revealed an upregulation of lipid and inorganic ion transport processes, while amino acid and carbohydrate transport processes were found to be downregulated. These findings offer insights into how organisms respond to ecotoxic stimuli, providing valuable information for understanding adaptation or defense pathways.</p>","PeriodicalId":7804,"journal":{"name":"Animal Cells and Systems","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10829830/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139650129","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Eugenol ameliorates uveitis in mice with experimental autoimmune encephalomyelitis through the suppression of key inflammatory genes 丁香酚通过抑制关键炎症基因改善实验性自身免疫性脑脊髓炎小鼠的葡萄膜炎
IF 2.9 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-01-18 DOI: 10.1080/19768354.2024.2304557
Sungmoo Hong, Kyungsook Jung, Meejung Ahn, Jeongtae Kim, Changjong Moon, Taekyun Shin
Visual impairment associated with uveitis is among the potential complications in multiple sclerosis (MS) and its animal model, experimental autoimmune encephalomyelitis (EAE). Bioinformatics analy...
葡萄膜炎引起的视力损害是多发性硬化症(MS)及其动物模型实验性自身免疫性脑脊髓炎(EAE)的潜在并发症之一。生物信息学分析...
{"title":"Eugenol ameliorates uveitis in mice with experimental autoimmune encephalomyelitis through the suppression of key inflammatory genes","authors":"Sungmoo Hong, Kyungsook Jung, Meejung Ahn, Jeongtae Kim, Changjong Moon, Taekyun Shin","doi":"10.1080/19768354.2024.2304557","DOIUrl":"https://doi.org/10.1080/19768354.2024.2304557","url":null,"abstract":"Visual impairment associated with uveitis is among the potential complications in multiple sclerosis (MS) and its animal model, experimental autoimmune encephalomyelitis (EAE). Bioinformatics analy...","PeriodicalId":7804,"journal":{"name":"Animal Cells and Systems","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-01-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139497257","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Role of Carbohydrate response element-binding protein in mediating dexamethasone-induced glucose transporter 5 expression in Caco-2BBE cells and during the developmental phase in mice 碳水化合物反应元件结合蛋白在介导地塞米松诱导的葡萄糖转运体 5 在 Caco-2BBE 细胞和小鼠发育阶段的表达中的作用
IF 2.9 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-01-04 DOI: 10.1080/19768354.2023.2301009
Soonjae Hwang, Sangbin Park, Jaewan Kim, Ah-Reum Oh, Ho-Jae Lee, Ji-Young Cha
Glucose transporter 5 (GLUT5), the main fructose transporter in mammals, is primarily responsible for absorbing dietary fructose in the small intestine. The expression of this intestinal gene signi...
葡萄糖转运体 5(GLUT5)是哺乳动物体内主要的果糖转运体,主要负责在小肠中吸收食物中的果糖。这种肠道基因的表达对果糖的吸收有重要影响。
{"title":"Role of Carbohydrate response element-binding protein in mediating dexamethasone-induced glucose transporter 5 expression in Caco-2BBE cells and during the developmental phase in mice","authors":"Soonjae Hwang, Sangbin Park, Jaewan Kim, Ah-Reum Oh, Ho-Jae Lee, Ji-Young Cha","doi":"10.1080/19768354.2023.2301009","DOIUrl":"https://doi.org/10.1080/19768354.2023.2301009","url":null,"abstract":"Glucose transporter 5 (GLUT5), the main fructose transporter in mammals, is primarily responsible for absorbing dietary fructose in the small intestine. The expression of this intestinal gene signi...","PeriodicalId":7804,"journal":{"name":"Animal Cells and Systems","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-01-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139105053","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Endothelial periostin regulates vascular remodeling by promoting endothelial dysfunction in pulmonary arterial hypertension 通过促进肺动脉高压的内皮功能障碍调节血管重塑的内皮表皮生长因子
IF 2.9 2区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-01-03 DOI: 10.1080/19768354.2023.2300437
Dawn Lee, Heeyoung Lee, Ha-neul Jo, Eunsik Yun, Byung Su Kwon, Jongmin Kim, Aram Lee
Pulmonary arterial hypertension (PAH) is characterized by vascular remodeling associated with extracellular matrix (ECM) deposition, vascular cell hyperproliferation, and neointima formation in the...
肺动脉高压(PAH)的特点是血管重塑,与细胞外基质(ECM)沉积、血管细胞过度增殖和新血管形成有关。
{"title":"Endothelial periostin regulates vascular remodeling by promoting endothelial dysfunction in pulmonary arterial hypertension","authors":"Dawn Lee, Heeyoung Lee, Ha-neul Jo, Eunsik Yun, Byung Su Kwon, Jongmin Kim, Aram Lee","doi":"10.1080/19768354.2023.2300437","DOIUrl":"https://doi.org/10.1080/19768354.2023.2300437","url":null,"abstract":"Pulmonary arterial hypertension (PAH) is characterized by vascular remodeling associated with extracellular matrix (ECM) deposition, vascular cell hyperproliferation, and neointima formation in the...","PeriodicalId":7804,"journal":{"name":"Animal Cells and Systems","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-01-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139082283","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Animal Cells and Systems
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1