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Artesunate disrupts germ layer formation by inhibiting BMP signaling pathway. 青蒿琥酯通过抑制BMP信号通路破坏胚层形成。
IF 2.5 2区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-05-13 eCollection Date: 2025-01-01 DOI: 10.1080/19768354.2025.2504940
Myeoung Su Kim, Gang-Ho Yoon, Sun-Cheol Choi

Xenopus embryo is a useful model for evaluating the adverse effects of any compounds on the cellular processes essential for early development and adult tissue homeostasis. Our chemical library screening with frog embryos identified artesunate (ART) as an inhibitor of the BMP signaling pathway to interfere with the specification of embryonic germ layers. Exposure to ART led to reduction of the anterior-posterior body axis, malformed tail structures and loss of pigment cells in the trunk region of embryos. The severely defective embryos exhibited truncation of posterior structures, resembling the phenotypes of tadpoles depleted of BMPs. Consistent with these morphological deformities, ART exposure inhibited the BMP-dependent transcriptions of target genes and specification of ventral mesoderm. In contrast, the expression of an organizer-specific gene induced by Activin/Nodal signaling remained unchanged in ART-treated cells. ART also enhanced anterior neural differentiation at the expense of epidermal and neural crest cell fates. Unexpectedly, we observed that ART exposure accelerates proteasomal degradation of a BMP transducer Smad1, leading to upregulation of MAP kinase activity. Taken together, these results suggest that ART acts as an inhibitor of BMP signaling pathway, exerting severe adverse effects on the specification of germ layers in vertebrate early development.

非洲爪蟾胚胎是评估任何化合物对早期发育和成体组织稳态所必需的细胞过程的不利影响的有用模型。我们对青蛙胚胎进行化学文库筛选,发现青蒿琥酯(ART)可以抑制BMP信号通路,干扰胚胎胚层的发育。抗逆转录病毒治疗导致胚胎前后体轴复位、尾部结构畸形和干区色素细胞丢失。严重缺陷的胚胎表现出后部结构的截断,类似于缺乏bmp的蝌蚪的表型。与这些形态畸形一致,ART暴露抑制了靶基因的bmp依赖性转录和腹侧中胚层的特异性。相反,激活素/节点信号诱导的组织特异性基因的表达在art处理的细胞中保持不变。ART也增强了前神经分化,但牺牲了表皮和神经嵴细胞的命运。出乎意料的是,我们观察到ART暴露加速了BMP传感器Smad1的蛋白酶体降解,导致MAP激酶活性上调。综上所述,这些结果表明ART作为BMP信号通路的抑制剂,对脊椎动物早期发育中胚层的规范产生严重的不利影响。
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引用次数: 0
Identification of YAP regulators through high-throughput screening and NanoBiT-based validation-drug repositioning for cancer therapy. 通过高通量筛选和基于纳米比特的验证-癌症治疗药物重新定位鉴定YAP调节因子。
IF 2.5 2区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-05-08 eCollection Date: 2025-01-01 DOI: 10.1080/19768354.2025.2489389
Ji-Youn Lim, Eui-Hwan Choi, Yujeong Kim, Minseong Kim, Dongkyu Choi, Wantae Kim, Boksik Cha

Yes-associated protein (YAP), a key co-transcription factor of the Hippo pathway, is a promising drug target for cancer therapy due to its critical role in promoting cell proliferation, survival, and tumor progression when dysregulated. While most Hippo pathway-targeting drugs focus on disrupting TEAD-YAP interactions or modulating the MST or LATS kinase cascade, new approaches are needed to identify small molecules that regulate YAP activity. In this study, we conducted high-throughput screening of FDA-approved drugs to discover potential YAP modulators. Using a NanoBiT-based system, which enables real-time and quantitative measurement of protein interactions, combined with phenotype-based assays in EGFP-YAP-expressing cells, we identified compounds that activate or inhibit YAP function. Among the identified YAP regulators, the microtubule destabilizer vinorelbine promoted YAP nuclear localization and transcriptional activation, while the antipsychotic drug thioridazine enhanced YAP phosphorylation at Ser127, resulting in its cytoplasmic retention and reduced transcriptional activity, effectively suppressing cancer cell growth. These findings demonstrate the potential of FDA-approved drugs in modulating YAP activity and present a novel screening strategy for developing YAP-targeting therapeutics. Furthermore, this approach can be extended to identify modulators of other signaling pathways, advancing drug discovery for a wide range of diseases.

yes相关蛋白(YAP)是Hippo通路的一个关键共转录因子,由于其在促进细胞增殖、存活和肿瘤进展中发挥关键作用,因此在癌症治疗中是一个很有希望的药物靶点。虽然大多数Hippo通路靶向药物专注于破坏TEAD-YAP相互作用或调节MST或LATS激酶级联,但需要新的方法来识别调节YAP活性的小分子。在本研究中,我们对fda批准的药物进行了高通量筛选,以发现潜在的YAP调节剂。使用基于nanobit的系统,可以实时定量测量蛋白质相互作用,结合egfp -YAP表达细胞的表型分析,我们确定了激活或抑制YAP功能的化合物。在已确定的YAP调节因子中,微管不稳定剂长春瑞宾促进了YAP的核定位和转录激活,而抗精神病药物硫硝嗪增强了YAP Ser127的磷酸化,导致其细胞质保留和转录活性降低,有效抑制了癌细胞的生长。这些发现证明了fda批准的药物在调节YAP活性方面的潜力,并为开发YAP靶向治疗提供了一种新的筛选策略。此外,这种方法可以扩展到识别其他信号通路的调节剂,促进广泛疾病的药物发现。
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引用次数: 0
Circ_0081343 promotes autophagy and alleviates pyroptosis via PI3 K/AKT/HIF-1α axis in hypoxia-induced fetal growth restriction of mice. Circ_0081343通过pi3k /AKT/HIF-1α轴促进缺氧诱导的胎儿生长受限小鼠自噬,减轻焦亡。
IF 2.5 2区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-05-06 eCollection Date: 2025-01-01 DOI: 10.1080/19768354.2025.2498932
Linmei Zheng, Rong Tang, Fiaz Ahmad, Junbo Fang, Lei Shi, Xiaoju Chen, Jing Li

Objective: Fetal growth restriction (FGR) is a serious pregnancy complication associated with an increased risk of perinatal morbidity and mortality. Notably, circular RNAs (circRNAs) significantly influence physiological development and disease pathogenesis. We reported previously that lower circ_0081343 expression is associated with placental trophoblast dysfunction. However, only a few studies have reported the role of circRNAs in FGR in vivo. Therefore, we investigated the effects of circ_0081343 overexpression in the FGR mouse model induced by maternal hypoxia.

Methods: Pregnant C57BL/6 mice were kept under hypoxic conditions (10.5% O2) from gestational days 11-17.5, whereas control mice were kept in normal oxygen conditions throughout the gestation period. The animals were sacrificed on the 18.5th day of gestation for prenatal observation. We recorded the maternal body weight, fetal body weight, crown-rump length, and placental weight. Subsequently, we assessed the expression of autophagy, pyroptosis-related protein, and PI3 K/AKT/HIF-1α pathway molecules in placental tissues using RT-PCR, western blotting, ELISA, and immunohistochemistry analysis.

Results: We observed low mmu_circ_0081343 expression in the placental tissues of the FGR mouse. However, the expression increased following the injection of adenovirus-mmu-circ_0081343. The overexpression of mmu-circ_0081343 alleviated FGR symptoms in the pregnant mice, including increasing fetal body and placental weight and ameliorating histological injury of the placenta. Additionally, overexpression of mmu-circ_0081343 upregulated Beclin1 expression, increased the LC3II/I ratio, and downregulated P62 expression, while suppressing the PI3 K/AKT/HIF-1α pathway.

Conclusions: circ_0081343 alleviated gestational hypoxia-induced placental dysfunction and fetal growth restriction (FGR) by promoting autophagy and inhibiting pyroptosis, potentially through the PI3 K/AKT/HIF-1α pathway.

目的:胎儿生长受限(FGR)是一种严重的妊娠并发症,与围产期发病率和死亡率的增加有关。值得注意的是,环状rna (circRNAs)显著影响生理发育和疾病发病机制。我们之前报道过circ_0081343的低表达与胎盘滋养细胞功能障碍有关。然而,只有少数研究报道了circRNAs在体内FGR中的作用。因此,我们研究了circ_0081343过表达对母体缺氧诱导的FGR小鼠模型的影响。方法:将妊娠C57BL/6小鼠从妊娠11 ~ 17.5天起置于低氧(10.5% O2)条件下,对照组小鼠整个妊娠期均处于正常氧条件下。于妊娠第18.5天处死,进行产前观察。记录母鼠体重、胎鼠体重、冠臀长、胎盘重量。随后,我们使用RT-PCR、western blotting、ELISA和免疫组织化学分析评估胎盘组织中自噬、热噬相关蛋白和pi3k /AKT/HIF-1α途径分子的表达。结果:我们观察到mmu_circ_0081343在FGR小鼠胎盘组织中的低表达。然而,注射腺病毒-mmu-circ_0081343后,表达增加。过表达mmu-circ_0081343可减轻妊娠小鼠的FGR症状,包括增加胎体和胎盘重量,改善胎盘的组织学损伤。此外,过表达mmu-circ_0081343上调Beclin1表达,增加LC3II/I比值,下调P62表达,同时抑制pi3k /AKT/HIF-1α通路。结论:circ_0081343可能通过pi3k /AKT/HIF-1α通路促进胎盘自噬和抑制焦亡,从而减轻妊娠期缺氧诱导的胎盘功能障碍和胎儿生长限制(FGR)。
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引用次数: 0
TRIM22 functions as a scaffold protein for autophagy initiation. TRIM22作为自噬启动的支架蛋白。
IF 2.5 2区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-05-06 eCollection Date: 2025-01-01 DOI: 10.1080/19768354.2025.2498926
Hyungsun Park, Hansol Heo, Yeongseo Song, Myung Shin Lee, Yebin Cho, Jae-Seon Lee, Jaerak Chang, Seongju Lee

Tripartite motif (TRIM) family proteins are increasingly recognized as important regulators of autophagy under various physiological and pathological conditions. TRIM22 has been previously shown to mediate autophagosome-lysosome fusion, but its potential role in earlier stages of autophagy remained unexplored. In this study, we investigated the function of TRIM22 in autophagy initiation. Overexpression of TRIM22 increased LC3-II levels and enhanced autophagic flux without affecting mTOR and AMPK activity. We found that TRIM22 interacts with components of both the ULK1 complex and the class III PI3K complex through distinct domains, recruiting them into punctate structures that represent autophagosome formation sites. Domain mapping revealed that the SPRY domain mediates interactions with ATG13 and FIP200, while the N-terminal region interacts with ULK1 and ATG101. The B-box domain of TRIM22 was identified as crucial for its interaction with Beclin-1, a key component of the class III PI3K complex. Deletion of this domain impaired the ability of TRIM22 to assemble the class III PI3K complex and induce autophagic flux. Interestingly, competitive binding assays revealed that Beclin-1 and PLEKHM1 bind to the same region of TRIM22, suggesting a mechanism for coordinating different stages of autophagy. The Alzheimer's disease-associated TRIM22 variant R321K maintained autophagy initiation function in both cell lines and primary neurons. These findings demonstrate that TRIM22 acts as a scaffold protein to promote autophagy initiation, in addition to its previously described role in autophagosome-lysosome fusion. Our study provides new insights into the molecular mechanisms by which TRIM proteins regulate multiple stages of the autophagy process.

Tripartite motif (TRIM)家族蛋白越来越被认为是各种生理和病理条件下自噬的重要调节因子。TRIM22先前已被证明介导自噬体-溶酶体融合,但其在自噬早期阶段的潜在作用仍未被探索。在本研究中,我们研究了TRIM22在自噬起始中的功能。过表达TRIM22可增加LC3-II水平,增强自噬通量,但不影响mTOR和AMPK活性。我们发现TRIM22通过不同的结构域与ULK1复合物和III类PI3K复合物的组分相互作用,将它们招募到代表自噬体形成位点的点状结构中。结构域映射显示SPRY结构域介导与ATG13和FIP200的相互作用,而n端区域介导与ULK1和ATG101的相互作用。TRIM22的B-box结构域对其与Beclin-1的相互作用至关重要,Beclin-1是III类PI3K复合物的关键成分。该结构域的缺失损害了TRIM22组装III类PI3K复合物和诱导自噬通量的能力。有趣的是,竞争性结合实验显示Beclin-1和PLEKHM1结合到TRIM22的同一区域,这表明了一种协调不同阶段自噬的机制。阿尔茨海默病相关的TRIM22变体R321K在细胞系和原代神经元中维持自噬起始功能。这些发现表明,TRIM22除了在自噬体-溶酶体融合中发挥作用外,还可以作为一种支架蛋白促进自噬的启动。我们的研究为TRIM蛋白调控自噬过程多个阶段的分子机制提供了新的见解。
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引用次数: 0
Early postnatal exposure to bicuculline modulates E/I balance and induces ASD-like behavioral phenotypes in mice. 出生后早期暴露于双核碱可调节小鼠E/I平衡并诱导asd样行为表型。
IF 2.5 2区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-04-28 eCollection Date: 2025-01-01 DOI: 10.1080/19768354.2025.2493258
Dongpil Shin, Eunbi Cho, Kwanghoon Park, ChiHye Chung, Dong Hyun Kim, Se Jin Jeon, Chan Young Shin

Autism spectrum disorder (ASD) is a neurodevelopmental condition characterized by social interaction deficits and repetitive behaviors. While precise causes of ASD remain elusive, growing evidence highlights that an imbalance in excitatory and inhibitory (E/I) signaling is a pivotal factor in ASD development and modulation. Balanced E/I neurotransmission is critical for circuit formation, synaptic plasticity, and developmental timing. However, key questions persist, including the critical perturbation window, neurological and neurodevelopmental effects, and clinical implications of E/I imbalance. This study investigated early-life modulation of the GABAergic system's impact on E/I balance and ASD-like behaviors in mice. Mice were treated with bicuculline, a GABAA receptor antagonist, from postnatal days 7-11, and behavioral tests were conducted during adolescence. Results revealed deficits in social interaction in both male and female mice and increased repetitive behaviors in bicuculline-treated male mice. Electrophysiological recordings in the mPFC indicated reduced resting membrane potential, heightened neuronal excitability, and a shift in the E/I ratio. In the hippocampus, recordings displayed enhanced LTP and altered synaptic plasticity. DEG analysis of the PFC in bicuculline-treated mice unveiled aberrant gene profiles related to the regulation of synaptic function. Clinical significance and underlying mechanisms of abnormal brain activity, neurodevelopment, and ASD-related behaviors prompted by neonatal bicuculline treatment require further investigation. Nevertheless, these results suggest that GABAergic signaling disruption during the neonatal period might contribute to ASD-related brain pathophysiological changes.

自闭症谱系障碍(ASD)是一种以社会交往缺陷和重复行为为特征的神经发育疾病。虽然ASD的确切原因仍然难以捉摸,但越来越多的证据表明,兴奋性和抑制性(E/I)信号的不平衡是ASD发展和调节的关键因素。平衡的E/I神经传递对神经回路形成、突触可塑性和发育时间至关重要。然而,关键问题仍然存在,包括关键扰动窗口,神经和神经发育的影响,以及E/I失衡的临床意义。本研究探讨了gaba能系统对小鼠E/I平衡和asd样行为的早期调节。小鼠从出生后7-11天开始接受双丘碱(一种GABAA受体拮抗剂)治疗,并在青春期进行行为测试。结果显示,雄性和雌性小鼠在社会互动方面都存在缺陷,而二花椰菜碱治疗的雄性小鼠的重复行为增加。mPFC的电生理记录显示静息膜电位降低,神经元兴奋性增强,E/I比值变化。在海马体中,记录显示LTP增强和突触可塑性改变。双球茎碱处理小鼠PFC的DEG分析揭示了与突触功能调节相关的异常基因谱。新生儿双歧杆菌治疗导致脑活动、神经发育和asd相关行为异常的临床意义和潜在机制有待进一步研究。然而,这些结果表明,新生儿期gaba能信号的中断可能有助于asd相关的脑病理生理变化。
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引用次数: 0
Unraveling ER dimerization dynamics in endocrine disruption based on a BRET-focused approach. 基于bret聚焦方法揭示内分泌干扰中的内质网二聚化动力学。
IF 2.5 2区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-04-28 eCollection Date: 2025-01-01 DOI: 10.1080/19768354.2025.2481984
Soomin Yum, Haksoo Lee, Yong-Kook Kwon, Gunyoung Lee, Hye-Young Lee, HyeSook Youn, BuHyun Youn

Endocrine-disrupting chemicals (EDCs) are exogenous compounds that interact with the estrogen receptor (ER), thereby disrupting estrogen-mediated signaling. In a previous study, we employed a bioluminescence resonance energy transfer (BRET) system to assess ER dimerization for detecting EDCs. To further determine whether the BRET assay could be used independently to identify EDCs, we investigated ER-EDC interactions before and after dimerization. Results from isothermal titration calorimetry (ITC) and dynamic light scattering (DLS) revealed that ER dimerization can be mediated by EDCs. Consequently, the BRET assay proved effective in detecting dimerization and clarifying its relevance to EDC-induced signaling disruption. Additionally, to examine EDC-induced transcriptional changes, we performed chromatin immunoprecipitation sequencing (ChIP-seq), followed by gene ontology (GO) analysis. These analyses demonstrated that EDCs affect various signaling pathways, including those involved in antibody-dependent cytotoxicity, bone morphogenetic protein (BMP) signaling in cardiac induction, and hepatocyte growth factor receptor signaling. Overall, this study elucidates the molecular mechanisms by which EDCs influence ER dimerization and signaling. These findings highlight the utility of the BRET-based assay for EDC detection and contribute to a deeper understanding of the systemic effects of EDCs on endocrine disruption.

内分泌干扰化学物质(EDCs)是与雌激素受体(ER)相互作用的外源性化合物,从而破坏雌激素介导的信号传导。在之前的研究中,我们采用生物发光共振能量转移(BRET)系统来评估ER二聚化以检测EDCs。为了进一步确定BRET检测是否可以独立用于识别edc,我们研究了二聚化前后ER-EDC的相互作用。等温滴定量热法(ITC)和动态光散射(DLS)结果表明,EDCs可以介导内质网二聚化。因此,BRET检测被证明是有效的检测二聚体并澄清其与edc诱导的信号中断的相关性。此外,为了检查edc诱导的转录变化,我们进行了染色质免疫沉淀测序(ChIP-seq),然后进行了基因本体(GO)分析。这些分析表明,EDCs影响多种信号通路,包括抗体依赖性细胞毒性、心脏诱导中的骨形态发生蛋白(BMP)信号传导和肝细胞生长因子受体信号传导。总之,本研究阐明了EDCs影响内质网二聚化和信号转导的分子机制。这些发现强调了基于bret的EDC检测方法的实用性,并有助于更深入地了解EDC对内分泌干扰的全身影响。
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引用次数: 0
Establishment of an in vitro erythroid differentiation system from canine peripheral blood mononuclear cells. 犬外周血单个核细胞体外红细胞分化系统的建立。
IF 2.5 2区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-04-28 eCollection Date: 2025-01-01 DOI: 10.1080/19768354.2025.2492148
Sung Ah Park, Arim Shin, Eunji Im, Do Hyeon Yu, Minji Kim, Chul Geun Kim, Eun Jung Baek

Blood transfusion is a critical, lifesaving medical procedure for dogs. However, the limited availability of blood donors and ethical concerns highlight the need for alternative solutions, such as in vitro-produced red blood cells (RBCs), which remain unexplored in canines. This study aimed to produce canine erythrocytes in vitro from peripheral blood (PB) mononuclear cells (MNCs), optimize culture conditions using either human or canine reagents, and identify relevant cell markers. Results indicated that canine erythropoiesis can be induced by human or canine cytokines, producing RBCs within approximately 20 days. Although cell numbers decreased during the first seven days, immature erythroid cells proliferated, reaching peak expansion and RBC production by day 17. Despite the smaller cell size of the cultured RBCs than that of humans, the morphology at each stage of erythroid maturation was analogous to that of human erythropoiesis. Furthermore, the expression patterns of canine alpha hemoglobin stabilizing protein and erythropoietin receptor mirrored those observed in human erythropoiesis. Oxygen-hemoglobin (oxygen-Hb) association and dissociation curves of cultured RBCs closely resembled those of native canine RBCs, indicating an appropriate oxygen-carrying capacity. This study presents the first evidence of successful in vitro production of canine RBCs, offering a promising tool for research and potential therapeutic applications.

输血对狗来说是一项至关重要的救命医疗程序。然而,有限的献血者和伦理问题突出了替代解决方案的必要性,例如体外产生的红细胞(rbc),这在犬类中尚未得到探索。本研究旨在体外培养犬外周血单核细胞(PB)红细胞,优化培养条件,并鉴定相关细胞标记物。结果表明犬红细胞生成可由人或犬细胞因子诱导,在大约20天内产生红细胞。虽然细胞数量在前7天减少,但未成熟的红系细胞增殖,在第17天达到扩增和红细胞生成的峰值。尽管培养红细胞的细胞大小比人红细胞小,但红细胞成熟各阶段的形态与人红细胞形成相似。此外,犬α -血红蛋白稳定蛋白和促红细胞生成素受体的表达模式与人类红细胞生成过程中观察到的表达模式一致。培养红细胞的氧血红蛋白(oxygen-Hb)缔合和解离曲线与犬红细胞非常相似,表明其具有适当的携氧能力。这项研究提供了体外成功生产犬红细胞的第一个证据,为研究和潜在的治疗应用提供了一个有前途的工具。
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引用次数: 0
Asxl1 loss in mice leads to microcephaly by regulating neural stem cell survival. 小鼠中Asxl1缺失通过调节神经干细胞存活导致小头畸形。
IF 2.5 2区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-04-23 eCollection Date: 2025-01-01 DOI: 10.1080/19768354.2025.2481979
Hyeju Kim, A-Reum Kim, Sukyoung Byun, Soo-Jong Um

Additional sex comb-like 1 (ASXL1) is a chromatin-associated factor essential for transcriptional regulation. De novo truncating mutations in the ASXL1 gene are linked to Bohring-Opitz syndrome, a developmental disorder characterized by microcephaly; however, the role of Asxl1 in brain development remains unclear. In this study, we demonstrate that Asxl1 deletion in mice induces microcephaly, primarily caused by a reduction in the size and number of cortical neurons. Asxl1 ablation disrupts neural stem cell (NSC) maintenance, as evidenced by decreased proliferation and increased apoptosis. Transcriptomic analysis of Asxl1-deficient NSCs revealed 4,635 differentially expressed genes, including 2,262 upregulated and 2,373 downregulated genes. Gene ontology analysis indicated that Asxl1 regulates NSC survival through the histone methyltransferase Ezh2, a core component of the Polycomb Repressive Complex 2 (PRC2). Inhibition of H3K27me3 using GSK343 significantly reduced the viability of wild-type NSCs, but had a markedly diminished effect on Asxl1-deficient NSCs. Furthermore, Ezh2 target genes associated with apoptosis, such as Epha7 and Osr1, were upregulated in wild-type NSCs following GSK343 treatment but not significantly affected in Asxl1-deficient NSCs. These findings establish Asxl1 as a critical regulator of NSC survival and neurogenesis via Ezh2-mediated chromatin modification and provide insights into the mechanisms underlying microcephaly in developmental disorders.

附加性梳状蛋白1 (ASXL1)是一种染色质相关因子,对转录调控至关重要。ASXL1基因的从头截断突变与bohling - opitz综合征(一种以小头畸形为特征的发育障碍)有关;然而,Asxl1在大脑发育中的作用仍不清楚。在这项研究中,我们证明了Asxl1缺失在小鼠中诱导小头畸形,主要是由皮质神经元的大小和数量减少引起的。Asxl1消融破坏神经干细胞(NSC)的维持,增殖减少和凋亡增加就是证据。对asxl1缺失的NSCs进行转录组学分析,发现了4635个差异表达基因,包括2262个上调基因和2373个下调基因。基因本体分析表明,Asxl1通过组蛋白甲基转移酶Ezh2调控NSC存活,Ezh2是Polycomb suppressuppressicomplex 2 (PRC2)的核心成分。使用GSK343抑制H3K27me3显著降低了野生型NSCs的活力,但对asxl1缺陷的NSCs的影响明显减弱。此外,与凋亡相关的Ezh2靶基因,如Epha7和Osr1,在GSK343治疗后,在野生型NSCs中上调,但在asxl1缺陷的NSCs中没有显著影响。这些发现表明Asxl1是通过ezh2介导的染色质修饰介导NSC存活和神经发生的关键调节因子,并为发育障碍小头畸形的潜在机制提供了见解。
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引用次数: 0
Long-read sequencing reveals novel transcript diversity in Polypterus senegalus. 长读测序揭示了塞内加尔多叶蛇新的转录多样性。
IF 3.2 2区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-03-31 eCollection Date: 2025-01-01 DOI: 10.1080/19768354.2025.2479057
Jeong Woen Shin, Bo-Mi Kim, Seung Hwan Lee, Jun Kim, Jae-Sung Rhee

Polypterus senegalus is a fish species characterized by primitive traits and unique physiological-anatomical features, representing a transitional stage toward terrestrial vertebrates. Diverging from other ray-finned fishes approximately 420 million years ago, it serves as a key model for vertebrate evolutionary studies. In this study, we identified 19,295 unique P. senegalus transcripts using Pacific Biosciences Iso-Seq, with most classified as novel exon combinations, intron retentions, or novel start and stop codons. This high-quality, full-length transcriptome revealed previously unreported isoforms and investigated their functional roles to enhance our understanding of the genomic complexity and evolutionary traits of the species. Notably, these isoforms were identified in genes associated with Polypterus's distinctive features, including limb flexibility (ACTN3B, MYBPC1), lung function (FAM13A, ERBB2, TCF7), and circulation (FBN1, MYH11B, MEF2CB). These findings offer molecular insights into early vertebrate terrestrial adaptation and the functional integration of key tissues in extant species.

塞内加尔多嘴鱼是一种具有原始特征和独特生理解剖特征的鱼类,代表着向陆生脊椎动物过渡的阶段。大约在4.2亿年前,它从其他鳍状鱼类中分化出来,成为脊椎动物进化研究的关键模型。在这项研究中,我们使用Pacific Biosciences的Iso-Seq鉴定了19295个独特的塞内加尔p.s enegalus转录本,其中大多数被分类为新的外显子组合,内含子保留或新的开始和停止密码子。这个高质量的全长转录组揭示了以前未报道的同种异构体,并研究了它们的功能作用,以增强我们对物种基因组复杂性和进化特征的理解。值得注意的是,这些同工异构体被鉴定为与多角鸭的独特特征相关的基因,包括肢体柔韧性(ACTN3B, MYBPC1),肺功能(FAM13A, ERBB2, TCF7)和循环(FBN1, MYH11B, MEF2CB)。这些发现为早期脊椎动物对陆地的适应和现存物种关键组织的功能整合提供了分子视角。
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引用次数: 0
Comparative epigenomics to clinical trials in human breast cancer and canine mammary tumor. 比较表观基因组学在人类乳腺癌和犬乳腺肿瘤临床试验中的应用。
IF 2.5 2区 生物学 Q3 CELL BIOLOGY Pub Date : 2025-03-19 eCollection Date: 2025-01-01 DOI: 10.1080/19768354.2025.2477024
Su-Jin Jeong, Kang-Hoon Lee, Je-Yoel Cho

Epigenetics and epigenomics are captivating fields of molecular biology, dedicated to the exploration of heritable alterations in gene expression and cellular phenotypes, which transpire devoid of any discernible modifications to the fundamental DNA sequence. This intricate regulatory apparatus encompasses multiple mechanisms, prominently featuring DNA methylation, histone modifications, and the involvement of non-coding RNA molecules in pivotal roles. To achieve a comprehensive grasp of these diverse mechanisms, it is imperative to conduct research employing animal models as proxies for human studies. Since experimental animal models like mice and rats struggle to replicate the diverse environmental conditions experienced by humans, this review focuses on comparing common epigenetic alterations in naturally occurring tumors in canine models, which share the human environment, with those in humans. Through this, we emphasize the importance of an epigenetic regulation in the comparative medical approach to a deeper understanding of cancers and further development of cancer treatments. Additionally, we elucidate epigenetic modifications pertinent to specific developmental stages, the ageing process, and the progression of various diseases.

表观遗传学和表观基因组学是分子生物学中引人入胜的领域,致力于探索基因表达和细胞表型的可遗传改变,这些改变不需要对基本DNA序列进行任何可识别的修饰。这种复杂的调控机制包括多种机制,突出的特点是DNA甲基化、组蛋白修饰和非编码RNA分子在关键作用中的参与。为了全面掌握这些不同的机制,必须采用动物模型作为人类研究的代理进行研究。由于小鼠和大鼠等实验动物模型难以复制人类所经历的多种环境条件,因此本综述的重点是比较共享人类环境的犬类模型中自然发生的肿瘤与人类模型中常见的表观遗传改变。通过这一点,我们强调表观遗传调控在比较医学方法中的重要性,以更深入地了解癌症和进一步发展癌症治疗。此外,我们阐明了与特定发育阶段、衰老过程和各种疾病进展相关的表观遗传修饰。
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Animal Cells and Systems
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