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Genetic Improvement of Stevia (Stevia rebaudiana Bertoni): A Potential Calorie Free Natural Sweetener
IF 1.8 3区 农林科学 Q2 AGRONOMY Pub Date : 2025-02-04 DOI: 10.1007/s12355-025-01543-z
Shivanand D. Ainapur, T. N. Lakshmidevamma, B. N. Maruthi Prasad, H. R. Meghana, P Veeresh, Shivanand Koti

The increasing global demand for Stevia rebaudiana Bertoni, as a natural non-calorie sweetener has driven concentrated breeding efforts towards its genetic improvement for large-scale commercialization. Steviol glycosides responsible for sweetness in stevia leaves include stevioside, rebaudiosides and dulcoside. Inadequate genetic resources, characterization and the lack of high yielding, superior varieties pose major challenge in stevia production. Developing stevia varieties for high dry leaf yield, high steviol glycosides content particularly rebaudioside-A, optimum leaf-to-stem ratio, enhanced growth and photosynthetic activity, combating biotic and abiotic stresses is being targeted in genetic improvement programmes. Stevia exhibits considerable genetic diversity and in order to elucidate the genetics of steviol glycosides; the pattern of diversity has been assessed for achieving desired improvement. Recent advancements in biotechnological tools such as marker-assisted selection, genomics-assisted breeding, transcriptomics, metabolomics and genetic engineering have further accelerated the breeding progress. Marker-assisted and genomics-assisted breeding facilitate targeted improvements by identifying key genes linked to steviol glycosides biosynthesis. Genome sequencing of stevia revealed a 1416 Mb genome with over 80 per cent repetitive elements and transcriptomic analyses have identified critical glycosyltransferase genes involved in glycosylation, a critical process in steviol glycosides biosynthesis. Functional genomics and Agrobacterium-mediated transformation techniques have demonstrated the potential of metabolic engineering for enhancing steviol glycosides yield. This review highlights the progress made in stevia genetic improvement, emphasizing the integration of conventional breeding with advanced genomic tools to develop superior varieties and meet the rising demand for this natural sweetener.

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引用次数: 0
Optimization of an Enhanced Micropropagation Protocol of Stevia rebaudiana for Mass Production in an Indian Sub-humid Region
IF 1.8 3区 农林科学 Q2 AGRONOMY Pub Date : 2025-01-27 DOI: 10.1007/s12355-025-01542-0
K. Abha Manohar, Kasireddy Sivasankarreddy, Gopal Shukla, Moumita Chakraborty, Bidhan Roy, Sumit Chakravarty

The present study was an attempt to optimize the regeneration protocols of Stevia rebaudiana (Bert.). Leaf and nodal explants were inoculated in MS medium supplemented with various plant growth regulators in different combinations and concentrations in order to attain direct and indirect regeneration. Among the treatments used, 2 mg/L of indole-3-acetic acid (IAA) + 1 mg/L of 6-Benzylaminopurine (BAP) displayed better results in stevia for callus induction when leaf and nodal explants were used, but in the case of nodal explants, it took more days for callus initiation compared to leaf segment. Among the treatments, 2.0 mg/L of IAA + 1.0 mg/L of BAP were found to be better for callus induction and subsequent plantlets regeneration (66.15%) from leaf explant of stevia. MS medium fortified with 0.5 mg/L of kinetin produced a high regeneration response (46.92%), the highest number of plantlets (40.67%) per explant, and the maximum number of roots (5.00) per plantlet in case of direct in vitro regeneration. While the MS medium fortified with 1.0 mg/L of BAP + 2.0 mg/L of IAA was found to be the best indirect in vitro regeneration of stevia plantlets from nodal explants concerning the highest regeneration response (68.10%), number of plantlets per explant and shoot length. MS medium added with 1.0 mg/L of BAP + 2.0 mg/L of IAA was reported to have the highest root regeneration ability (67.41%) and considerable length of roots for rooting of in vitro derived plantlets of stevia. The Soilrite was the best for acclimatizing in vitro regenerated plantlets of stevia. This is the first successful report on micropropagation in Stevia rebaudiana from sub-Himalayan region of West Bengal, India. A combination of IAA and BAP proved better for direct and indirect organogenesis. The Soilrite media was the best for acclimatization of in vitro regenerated plantlets with the highest (68.57%) survival rate in field conditions. Results of the present study will be useful for mass multiplication of Stevia rebaudiana using direct and indirect in vitro approaches. Moreover, direct in vitro shoot formation from leaves of Stevia rarely reported may open up possibilities of more successful large-scale cultivation of Stevia in the region and elsewhere.

本研究试图优化甜叶菊(Stevia rebaudiana (Bert.))的再生方案。将叶片和节的外植体接种到添加了不同组合和浓度的各种植物生长调节剂的 MS 培养基中,以实现直接和间接再生。在使用的处理中,2 毫克/升的吲哚-3-乙酸(IAA)+ 1 毫克/升的 6-苄基氨基嘌呤(BAP)对甜叶菊叶片和节的外植体诱导胼胝体有更好的效果,但与叶片相比,节的外植体需要更多的天数才能萌发胼胝体。在各种处理中,2.0 毫克/升 IAA + 1.0 毫克/升 BAP 对甜叶菊叶片外植体的胼胝体诱导和随后的植株再生(66.15%)效果较好。添加了 0.5 毫克/升酮素的 MS 培养基产生了较高的再生反应(46.92%),在直接离体再生的情况下,每个外植体的小植株数量最多(40.67%),每个小植株的根数量最多(5.00)。而添加了 1.0 毫克/升 BAP + 2.0 毫克/升 IAA 的 MS 培养基是从节的外植体间接再生甜叶菊小植株的最佳培养基,其再生反应(68.10%)、每个外植体的小植株数量和芽长均最高。据报道,添加了 1.0 毫克/升 BAP + 2.0 毫克/升 IAA 的 MS 培养基具有最高的根再生能力(67.41%)和相当长的根长,可用于甜叶菊离体衍生小植株的生根。在使甜叶菊离体再生小植株适应环境方面,Soilrite 的效果最好。这是印度西孟加拉邦次喜马拉雅地区首次成功报道甜叶菊的微繁殖。事实证明,IAA 和 BAP 的组合对直接和间接器官形成效果更好。在田间条件下,Soilrite 培养基对离体再生小植株的适应性最好,成活率最高(68.57%)。本研究的结果将有助于利用直接和间接体外方法大规模繁殖甜叶菊。此外,从甜叶菊叶片直接体外形成嫩枝的方法鲜有报道,这可能为该地区和其他地区更成功地大规模种植甜叶菊提供了可能性。
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引用次数: 0
Design of an Electrically Driven Sugarcane Seeding System Based on GNSS-RTK Receiver and SAPSO-LADRC Algorithm
IF 1.8 3区 农林科学 Q2 AGRONOMY Pub Date : 2025-01-25 DOI: 10.1007/s12355-025-01540-2
Yang Li, Shang-ping Li, Chun-ming Wen, Kai-hua Li

In this study, the electrically driven sugarcane seeding system configures the desired plant spacing via the touchscreen human–computer interaction. The operating speed of the implement is acquired through the GNSS-RTK receiver in real-time during operation. In contrast, the instantaneous rotational speed of the motor is measured using a rotary encoder. Subsequently, the rotational speed of the sowing motor is regulated using a control system based on linear active disturbance rejection control. The parameters of this control system are optimized through the simulated annealing particle swarm optimization algorithm. A mechanism for monitoring misplaced sugarcane seeding is designed to detect seed misplacement instances and store the misplacement locations’ coordinates. The results of simulated seeding experiments indicate that, under various seeding operation speeds and plant spacing settings, the seeding motor’s theoretical and actual rotational speed discrepancy falls within the range of 4.03–6.61%. The average coefficient of variation for qualified plant spacing is 12.62%. The average error for seeding plant spacing is 8.44%. Compared to a similar type of ground wheel-driven sugarcane planting mechanism, the sugarcane planting system with electric drive exhibits an increase of 1.44% in the accuracy of planting spacing and a reduction of 6.72% in the average coefficient of variation for qualified plant spacing. The average positioning error for missing cane seeding is 84.11 mm, which can meet the sugarcane seedling shortage replanting operation requirements. The electric-driven sugarcane seeding system designed in this study overcomes the inflexibility of ground wheel-driven systems, effectively improving planting accuracy and flexibility. Additionally, it enables precise positioning of missed seeding spots, supporting efficient replanting operations. This study has reference significance for sugarcane precision planting technology.

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引用次数: 0
Stability and Adaptability of Sugar Beet Examined Based on AMMI and BLUP–GGE Biplot Analyses
IF 1.8 3区 农林科学 Q2 AGRONOMY Pub Date : 2025-01-25 DOI: 10.1007/s12355-025-01539-9
Yuhang Lin, Xinwang Dang, Xiaohang Hu, Yanli Li, Shuo Liu

To identify high-yielding, adaptable, and regionally representative sugar beet varieties, this study applied analysis of variance, the additive main effects and multiplicative interaction (AMMI), best linear unbiased prediction (BLUP) analysis, and the genotype main effects plus genotype–environment interaction (GGE) biplot method. We evaluated the sugar content and root yield of 16 sugar beet varieties grown at seven different trial locations in 2021. The results indicated significant differences between the uncorrected data and the BLUP values, with the latter being more accurate and reliable in representing breeding values. Among the tested varieties, KWS 7748–1 (V6) exhibited the highest and most stable yield across all three models, demonstrating strong adaptability and high yield potential in various environments. This suggests that KWS 7748–1 (V6) has high potential for stable yields, even in regions with fluctuating climatic conditions. Therefore, it could become an important resource in breeding programs, particularly for improving yield adaptability and stress resistance. Its reliability in diverse environments makes it an ideal candidate for widespread cultivation, contributing to increased sugar beet production and food security. Furthermore, Jialaid Banner (E7) was identified as the most discriminative and representative trial location. The combined application of analysis of variance, AMMI model, BLUP analysis, and GGE biplot method enhanced the scientific rigor, comprehensiveness, and effectiveness of the regional trials for sugar beet varieties.

为了确定高产、适应性强且具有区域代表性的甜菜品种,本研究采用了方差分析、加性主效应和乘性交互作用(AMMI)、最佳线性无偏预测(BLUP)分析以及基因型主效应加基因型-环境交互作用(GGE)双图法。我们评估了 2021 年在七个不同试验地点种植的 16 个甜菜品种的含糖量和根产量。结果表明,未校正数据与 BLUP 值之间存在显著差异,后者在代表育种值方面更为准确可靠。在受试品种中,KWS 7748-1(V6)在所有三个模型中产量最高且最稳定,表现出在各种环境下的强适应性和高产潜力。这表明,KWS 7748-1(V6)即使在气候条件多变的地区也有很高的稳产潜力。因此,它可以成为育种计划中的重要资源,尤其是在提高产量适应性和抗逆性方面。它在不同环境中的可靠性使其成为广泛种植的理想候选品种,有助于提高甜菜产量和粮食安全。此外,贾来德旗(E7)被确定为最具鉴别性和代表性的试验地点。方差分析、AMMI 模型、BLUP 分析和 GGE 双图法的综合应用提高了甜菜品种区域试验的科学性、全面性和有效性。
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引用次数: 0
Development of CRISPR-Cas9 Algorithm for Designing gRNAs for Polyploid Sugarcane
IF 1.8 3区 农林科学 Q2 AGRONOMY Pub Date : 2025-01-24 DOI: 10.1007/s12355-024-01523-9
C. P. Mohammed Ajmal, S. Keerthana, N. Hemalatha, K. Ameer Suhail

This research paper addresses the challenge of editing complex genes in crops, specifically sugarcane and other polyploid plants, by leveraging CRISPR-Cas9 technology. A specialized computer program was developed to facilitate precise and efficient gene editing in these crops. Genomic sequences, annotations, and related datasets were sourced from the Sugarcane Genomes database (http://sugarcane-genome.org). Data in FASTA, GFF, and CSV formats enabled efficient preprocessing. ClustalW was used to identify target regions in the sugarcane genome for gRNA design, focusing on subsequences of 20 bases that ended with the "NGG" protospacer adjacent motif (PAM). Specific criteria were followed for gRNA design, considering patterns and matching confidence. High-performance computing, including GPUs and cloud platforms, handled the extensive genomic data. ChopChop and CRISPOR algorithms, along with Python libraries, supported systematic analysis, ensuring precise gRNA design. Potential target regions were identified in the PP2C genes within the sugarcane genome for CRISPR-Cas9 genome editing. The source genome database, classified based on gene families, yielded 6904 subsequences, with 1251 showing over 90% similarity, indicating conserved regions. The tool identified off-targets and unique targets. The sugarcane guide RNA (gRNA) design tool was initially developed and tested using a single set of genes and passed the initial validation, demonstrating its capability to accurately design gRNAs for the selected gene set. Given this success, the tool's application is planned to be expanded to encompass the entire sugarcane genome, enabling comprehensive gRNA design for all gene sets in sugarcane and facilitating more extensive genetic editing and research opportunities.

这篇研究论文探讨了利用 CRISPR-Cas9 技术编辑农作物(特别是甘蔗和其他多倍体植物)复杂基因所面临的挑战。研究人员开发了一种专门的计算机程序,以促进对这些作物进行精确、高效的基因编辑。基因组序列、注释和相关数据集来自甘蔗基因组数据库(http://sugarcane-genome.org)。采用 FASTA、GFF 和 CSV 格式的数据可实现高效的预处理。ClustalW 被用来确定甘蔗基因组中用于设计 gRNA 的目标区域,重点是以 "NGG "原间隔邻接基序(PAM)结尾的 20 个碱基的子序列。gRNA 设计遵循特定标准,考虑模式和匹配置信度。包括 GPU 和云平台在内的高性能计算处理了大量基因组数据。ChopChop 和 CRISPOR 算法以及 Python 库支持系统分析,确保了 gRNA 的精确设计。甘蔗基因组中的 PP2C 基因被确定为 CRISPR-Cas9 基因组编辑的潜在目标区域。根据基因家族分类的源基因组数据库产生了 6904 个子序列,其中 1251 个相似度超过 90%,表明存在保守区域。该工具确定了非目标和独特目标。甘蔗引导 RNA(gRNA)设计工具最初是用一组基因开发和测试的,并通过了初步验证,证明它有能力为所选基因集准确设计 gRNA。鉴于这一成功,该工具的应用范围计划扩大到整个甘蔗基因组,从而实现对甘蔗所有基因组的全面 gRNA 设计,促进更广泛的基因编辑和研究机会。
{"title":"Development of CRISPR-Cas9 Algorithm for Designing gRNAs for Polyploid Sugarcane","authors":"C. P. Mohammed Ajmal,&nbsp;S. Keerthana,&nbsp;N. Hemalatha,&nbsp;K. Ameer Suhail","doi":"10.1007/s12355-024-01523-9","DOIUrl":"10.1007/s12355-024-01523-9","url":null,"abstract":"<div><p>This research paper addresses the challenge of editing complex genes in crops, specifically sugarcane and other polyploid plants, by leveraging CRISPR-Cas9 technology. A specialized computer program was developed to facilitate precise and efficient gene editing in these crops. Genomic sequences, annotations, and related datasets were sourced from the Sugarcane Genomes database (http://sugarcane-genome.org). Data in FASTA, GFF, and CSV formats enabled efficient preprocessing. ClustalW was used to identify target regions in the sugarcane genome for gRNA design, focusing on subsequences of 20 bases that ended with the \"NGG\" protospacer adjacent motif (PAM). Specific criteria were followed for gRNA design, considering patterns and matching confidence. High-performance computing, including GPUs and cloud platforms, handled the extensive genomic data. ChopChop and CRISPOR algorithms, along with Python libraries, supported systematic analysis, ensuring precise gRNA design. Potential target regions were identified in the PP2C genes within the sugarcane genome for CRISPR-Cas9 genome editing. The source genome database, classified based on gene families, yielded 6904 subsequences, with 1251 showing over 90% similarity, indicating conserved regions. The tool identified off-targets and unique targets. The sugarcane guide RNA (gRNA) design tool was initially developed and tested using a single set of genes and passed the initial validation, demonstrating its capability to accurately design gRNAs for the selected gene set. Given this success, the tool's application is planned to be expanded to encompass the entire sugarcane genome, enabling comprehensive gRNA design for all gene sets in sugarcane and facilitating more extensive genetic editing and research opportunities.</p></div>","PeriodicalId":781,"journal":{"name":"Sugar Tech","volume":"27 3","pages":"979 - 983"},"PeriodicalIF":1.8,"publicationDate":"2025-01-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143861331","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparative Metabolomics Analysis of Terpenoid and Flavonoid in Roots of Red Beet and Sugar Beet (Beta vulgaris L.)
IF 1.8 3区 农林科学 Q2 AGRONOMY Pub Date : 2025-01-24 DOI: 10.1007/s12355-025-01534-0
Wentao He, Naixin Liu, Qin Zhou, Linxuan Li, Wenwen Zhao

There is a lack of systematic analysis and research on the special components of red beet and sugar beet, which are common beet varieties rich in a variety of beneficial chemicals. To investigate the differences in the composition of flavonoids and terpenoids in roots of red beet and sugar beet, poinsettia(red beet) and HD802(sugar beet) were detected and analysed in the present study by using the UPLC-MS/MS detection platform and the MWDB(Metware database), and orthogonal partial least squares discriminant analysis (OPLS-DA) was used to screen out the differential metabolites from the detected flavonoid metabolites and terpenoids metabolites. A total of 69 flavonoid metabolites from 6 classes and 48 terpenoids from 6 classes were detected in two kinds of beet roots. Analysis of variance (ANOVA) showed that the content of 5 flavonoid and 4 terpenoid differential metabolites was higher in red beet roots than in sugar beet roots, and the content of the remaining 25 flavonoid and 2 terpenoid differential metabolites was lower than that of sugar beet roots. According to the metabolite Log2FC, the components of the flavonoid metabolites with large difference ratio were mainly Polymethyl flavonoid derivatives, Iso-rhamnoside and Rhamnoside, Marigold glycoside, Methoxyl flavonoid derivatives, Diosmetin derivatives, Chrysoeriol and its derivatives, Luteolin derivatives, Homonetsin derivatives and Kaempferol derivatives. Significant differences in flavonoid metabolites and terpenoid metabolites between the two beet roots were found by non-targeted analysis of variance and can be further analysed as characteristic metabolites.

红甜菜和甜菜是常见的甜菜品种,富含多种对人体有益的化学物质,但目前还缺乏对这两种甜菜特殊成分的系统分析和研究。为了研究红甜菜和甜菜根中黄酮类和萜类化合物组成的差异,本研究利用 UPLC-MS/MS 检测平台和 MWDB(Metware 数据库)对一品红(红甜菜)和 HD802(甜菜)进行了检测和分析,并采用正交偏最小二乘判别分析(OPLS-DA)从检测到的黄酮类代谢物和萜类代谢物中筛选出差异代谢物。在两种甜菜根中共检测到 6 类 69 种黄酮类代谢物和 6 类 48 种萜类化合物。方差分析表明,红甜菜根中 5 种黄酮类和 4 种萜类差异代谢物的含量高于甜菜根,其余 25 种黄酮类和 2 种萜类差异代谢物的含量低于甜菜根。根据代谢物对数2FC,黄酮类代谢物中差异比例较大的成分主要是多甲基黄酮衍生物、异鼠李糖苷和鼠李糖苷、金盏花苷、甲氧基黄酮衍生物、薯蓣皂苷衍生物、香叶醇及其衍生物、木犀草素衍生物、高黄酮素衍生物和山奈酚衍生物。通过非目标方差分析发现,两种甜菜根的黄酮类代谢物和萜类代谢物存在显著差异,可进一步分析其特征代谢物。
{"title":"Comparative Metabolomics Analysis of Terpenoid and Flavonoid in Roots of Red Beet and Sugar Beet (Beta vulgaris L.)","authors":"Wentao He,&nbsp;Naixin Liu,&nbsp;Qin Zhou,&nbsp;Linxuan Li,&nbsp;Wenwen Zhao","doi":"10.1007/s12355-025-01534-0","DOIUrl":"10.1007/s12355-025-01534-0","url":null,"abstract":"<div><p>There is a lack of systematic analysis and research on the special components of red beet and sugar beet, which are common beet varieties rich in a variety of beneficial chemicals. To investigate the differences in the composition of flavonoids and terpenoids in roots of red beet and sugar beet, poinsettia(red beet) and HD802(sugar beet) were detected and analysed in the present study by using the UPLC-MS/MS detection platform and the MWDB(Metware database), and orthogonal partial least squares discriminant analysis (OPLS-DA) was used to screen out the differential metabolites from the detected flavonoid metabolites and terpenoids metabolites. A total of 69 flavonoid metabolites from 6 classes and 48 terpenoids from 6 classes were detected in two kinds of beet roots. Analysis of variance (ANOVA) showed that the content of 5 flavonoid and 4 terpenoid differential metabolites was higher in red beet roots than in sugar beet roots, and the content of the remaining 25 flavonoid and 2 terpenoid differential metabolites was lower than that of sugar beet roots. According to the metabolite Log<sub>2</sub>FC, the components of the flavonoid metabolites with large difference ratio were mainly Polymethyl flavonoid derivatives, Iso-rhamnoside and Rhamnoside, Marigold glycoside, Methoxyl flavonoid derivatives, Diosmetin derivatives, Chrysoeriol and its derivatives, Luteolin derivatives, Homonetsin derivatives and Kaempferol derivatives. Significant differences in flavonoid metabolites and terpenoid metabolites between the two beet roots were found by non-targeted analysis of variance and can be further analysed as characteristic metabolites.</p></div>","PeriodicalId":781,"journal":{"name":"Sugar Tech","volume":"27 3","pages":"811 - 820"},"PeriodicalIF":1.8,"publicationDate":"2025-01-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143861332","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identifying Novel QTLs and Candidate Genes for Tillering Ability in Sugarcane (Saccharum spp.)
IF 1.8 3区 农林科学 Q2 AGRONOMY Pub Date : 2025-01-22 DOI: 10.1007/s12355-025-01531-3
Junteng Fang, Ruiqiang Lai, Zaid Chachar, Yiyun Gui, Lina Fan, Huanzhang Lin, Weijun Cai, Yueping Su, Weiwei Chen, Xiaoming Xue, Yucong Li, Liping Xu, Xuhui Li, Yongwen Qi

Sugarcane is a tropical and subtropica cultivated crop that exhibits complex genetic traits. Key agronomic characteristics, such as tillering rate (T-rate) and the number of canes per hectare (NCPH), are crucial for yield optimization. This study employed a two-way pseudo-testcross strategy mapping approach with a 172 F1 population derived from ‘Yuenong73-204’ (low-tillering) × ‘CP72-1210’ (high-tillering). A genetic map spanning 1578.04 cM was constructed using 572 SNP identified via chip array genotyping. Through quantitative trait loci (QTL) mapping with LOD > 3, five QTLs linked to T-rate and four to NCPH were identified. Meanwhile, one QTL consistently present in at least two environments and one QTL present in both tillering traits. These QTLs accounted for the explanatory rate of phenotypic variation (PVE), ranging from 7.7 to 11.1% for T-rate and 5.6% to 10.7% for NCPH. Additionally, we screened one representative loci (AX-171307910) with one excellent genotype (GG), based on the QTL of qSE1/E2NCPH57 for NCPH, which excellent genotype will lead sugarcane toward better tillering traits. Finally, seven having this excellent genotype were screened. Further analysis revealed 3 relatively reliable candidate genes within the QTL of qSE1/E2NCPH57, including Soffic.01G0055400-1P, Soffic.01G0055410-1A, and Soffic.01G0055150-1A, respectively. However, RT-qPCR analysis discovered that the expression level of Soffic.01G0055400-1P and Soffic.01G0055150-A showed significant difference between Yuenong73-204 and CP72-1210, suggesting these two candidate genes were highly likely to be important genes affecting tillering. These insights offer valuable reference points for genetic enhancement strategies targeting tillers and for effective stalk development in sugarcane.

{"title":"Identifying Novel QTLs and Candidate Genes for Tillering Ability in Sugarcane (Saccharum spp.)","authors":"Junteng Fang,&nbsp;Ruiqiang Lai,&nbsp;Zaid Chachar,&nbsp;Yiyun Gui,&nbsp;Lina Fan,&nbsp;Huanzhang Lin,&nbsp;Weijun Cai,&nbsp;Yueping Su,&nbsp;Weiwei Chen,&nbsp;Xiaoming Xue,&nbsp;Yucong Li,&nbsp;Liping Xu,&nbsp;Xuhui Li,&nbsp;Yongwen Qi","doi":"10.1007/s12355-025-01531-3","DOIUrl":"10.1007/s12355-025-01531-3","url":null,"abstract":"<div><p>Sugarcane is a tropical and subtropica cultivated crop that exhibits complex genetic traits. Key agronomic characteristics, such as tillering rate (T-rate) and the number of canes per hectare (NCPH), are crucial for yield optimization. This study employed a two-way pseudo-testcross strategy mapping approach with a 172 F1 population derived from ‘Yuenong73-204’ (low-tillering) × ‘CP72-1210’ (high-tillering). A genetic map spanning 1578.04 cM was constructed using 572 SNP identified via chip array genotyping. Through quantitative trait loci (QTL) mapping with LOD &gt; 3, five QTLs linked to T-rate and four to NCPH were identified. Meanwhile, one QTL consistently present in at least two environments and one QTL present in both tillering traits. These QTLs accounted for the explanatory rate of phenotypic variation (PVE), ranging from 7.7 to 11.1% for T-rate and 5.6% to 10.7% for NCPH. Additionally, we screened one representative loci (AX-171307910) with one excellent genotype (GG), based on the QTL of <i>qSE1/E2NCPH57</i> for NCPH, which excellent genotype will lead sugarcane toward better tillering traits. Finally, seven having this excellent genotype were screened. Further analysis revealed 3 relatively reliable candidate genes within the QTL of <i>qSE1/E2NCPH57</i>, including <i>Soffic</i>.01G0055400-1P, <i>Soffic</i>.01G0055410-1A, and <i>Soffic</i>.01G0055150-1A, respectively. However, RT-qPCR analysis discovered that the expression level of <i>Soffic</i>.01G0055400-1P and <b><i>Soffic</i></b>.01G0055150-A showed significant difference between Yuenong73-204 and CP72-1210, suggesting these two candidate genes were highly likely to be important genes affecting tillering. These insights offer valuable reference points for genetic enhancement strategies targeting tillers and for effective stalk development in sugarcane.</p></div>","PeriodicalId":781,"journal":{"name":"Sugar Tech","volume":"27 3","pages":"798 - 810"},"PeriodicalIF":1.8,"publicationDate":"2025-01-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143861274","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Energy and Environmental Analysis of Different Methods for Using Bagasse from Sugarcane by Life Cycle Assessment Approach
IF 1.8 3区 农林科学 Q2 AGRONOMY Pub Date : 2025-01-22 DOI: 10.1007/s12355-025-01536-y
Atefeh Mousavi, Mahmoud Ghasemi-Nejad-Raeini, Morteza Taki, Behzad Elhami

One of the most significant challenges in the agricultural sector is managing waste from its products. This study examined the energy and environmental indicators of three products derived from sugarcane bagasse including: compost, livestock feed and medium fiberboard produced in the agriculture and industry of the Imam Khomeini factory in Shushtar, Khuzestan Province of Iran. The energy analysis results showed that the total energy output for producing one ton of compost, livestock feed, and one m3 of fiberboard was 300 MJ, 32,170 MJ, and 34,390 MJ and the energy ratio was 0.007, 1.41, and 2.38, respectively. Urea fertilizer (75% of total energy share) in compost production, peat bagasse (45% of total energy share) in livestock feed production and polyurethane adhesive (52% of total energy share) in fiberboard production were identified as the most consumed inputs for each product. The environmental results showed that the total environmental damage (Final Environmental Index) for compost, livestock feed and medium fiberboard was 1.077 pp ton−1, 9.02 pp ton−1 and 3.43 pp ton−1, respectively.

{"title":"Energy and Environmental Analysis of Different Methods for Using Bagasse from Sugarcane by Life Cycle Assessment Approach","authors":"Atefeh Mousavi,&nbsp;Mahmoud Ghasemi-Nejad-Raeini,&nbsp;Morteza Taki,&nbsp;Behzad Elhami","doi":"10.1007/s12355-025-01536-y","DOIUrl":"10.1007/s12355-025-01536-y","url":null,"abstract":"<div><p>One of the most significant challenges in the agricultural sector is managing waste from its products. This study examined the energy and environmental indicators of three products derived from sugarcane bagasse including: compost, livestock feed and medium fiberboard produced in the agriculture and industry of the Imam Khomeini factory in Shushtar, Khuzestan Province of Iran. The energy analysis results showed that the total energy output for producing one ton of compost, livestock feed, and one m<sup>3</sup> of fiberboard was 300 MJ, 32,170 MJ, and 34,390 MJ and the energy ratio was 0.007, 1.41, and 2.38, respectively. Urea fertilizer (75% of total energy share) in compost production, peat bagasse (45% of total energy share) in livestock feed production and polyurethane adhesive (52% of total energy share) in fiberboard production were identified as the most consumed inputs for each product. The environmental results showed that the total environmental damage (Final Environmental Index) for compost, livestock feed and medium fiberboard was 1.077 pp ton<sup>−1</sup>, 9.02 pp ton<sup>−1</sup> and 3.43 pp ton<sup>−1</sup>, respectively.</p></div>","PeriodicalId":781,"journal":{"name":"Sugar Tech","volume":"27 3","pages":"783 - 797"},"PeriodicalIF":1.8,"publicationDate":"2025-01-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143861275","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
An Assessment of Physico-Chemical Properties, Micronutrients, Polyphenolic Profile, and Antioxidant Activity of Non-Centrifugal Sugar
IF 1.8 3区 农林科学 Q2 AGRONOMY Pub Date : 2025-01-21 DOI: 10.1007/s12355-024-01507-9
Nisha Pujari, Nirali J. Dedhia, Nidhi Gupta, Yamini Iyer, Narendra G. Shah, Sanjay M. Mahajani, Amit Arora

Jaggery, a non-centrifugal sugar (NCS), is regarded as a healthier option than refined sugar because of its non-sugar components. The study aimed to determine whether processing variation contributed significantly to changes in physical characteristics, polyphenolic contents, antioxidant activity, and mineral and vitamin contents. Total of 30 (16 blocks and 14 powder) NCS samples produced in two states of India were evaluated for sugars, moisture, ash, water activity, colour, total polyphenols and flavonoid contents, antioxidant activity, and mineral and vitamin contents. Profiling of polyphenolic compounds was conducted with liquid chromatography-mass spectroscopy. In vitro radical scavenging and ferric reducing power were evaluated for antioxidant activities using whole NCS samples. Block and powder samples were found to differ in terms of the micronutrient profile, total polyphenolic content, water activity, and colour index. A variation was also seen between the two selected regions of production in addition to variation within the same location. Several polyphenols, including maritimetin, prunitrin, and isoferulic acid, were found in few NCS samples. Variations among in vitro antioxidant activity could be correlated (r ≥ 0.5) to phenolics and flavonoids contents. Shelf-life assessment of representative NCS powder and blocks at two different storage conditions showed lower microbial stability of blocks compared to powders (p < 0.05). Therefore, NCS produced at the same unit during the same season cannot be considered as a standard composition of micronutrients and bioactives. This research provides more evidence demonstrating how the location, processing method, and sugarcane variety used can affect the nutritional profile of NCS and their potential health benefits.

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引用次数: 0
Predictive Modeling of Glycemic Indices of Value-Added Coconut (Cocos nucifera L) Jaggery Enriched with Specific Ingredients 富含特定成分的增值椰子(Cocos nucifera L)琼脂的血糖生成指数预测模型
IF 1.8 3区 农林科学 Q2 AGRONOMY Pub Date : 2025-01-21 DOI: 10.1007/s12355-025-01535-z
H. P. D. T. Hewa Pathirana, I. Wijesekara, L. L. W. C. Yalegama, M. A. Jayasinghe, K. P. Waidyarathne, C. N. Hitigedera

Coconut (Cocos nucifera L) jaggery is an alternative sweetener, especially among rural Asian communities. The focus of this study is the evaluation of in vitro digestibility and prediction of glycemic index (PGI) for four types of coconut jaggery; jaggery produced from traditional sap collection method using hal bark (Vateria capalifera) (HAL Jaggery), the jaggery prepared from pure sap collected from a novel sap collection device (NSCM Jaggery), jaggery from collected sap through a novel sap collection method with 0.2% cinnamon (Cinnamomum zeylanicum) (CIN Jaggery) and the jaggery value added with 0.05% of nutmeg (Myristica fragrans) (NUT Jaggery). Digestion and digestibility tests for each type of sweetener were done with cane sugar as a comparison. Results revealed that four types of jaggery have different hydrolysis rates from 30 to 180 min. The hydrolysis index (HI) of cane sugar was significantly higher than that of the others (55 ± 0.023%), whereas the lowest HI was observed in NUT Jaggery (32 ± 0.014%). According to the in vitro glycemic prediction, all four types of coconut jaggery samples were categorized under a medium GI sweetener, while cane sugar was categorized as a high GI (69.91 ± 0.02) sweetener.

椰子(Cocos nucifera L)琼脂是一种替代甜味剂,尤其是在亚洲农村社区。本研究的重点是评估四种椰子琼脂的体外消化率和预测血糖生成指数(PGI);使用哈拉树皮(Vateria capalifera)的传统树液收集法生产的琼脂(HAL Jaggery)、从新型树液收集装置收集的纯树液中制备的琼脂(NSCM Jaggery)、通过新型树液收集法收集的树液中添加 0.2% 的肉桂(Cinnamomum zeylanicum)制成的琼脂(CIN Jaggery),以及添加 0.05% 的肉豆蔻(Myristica fragrans)制成的琼脂(NUT Jaggery)。每种甜味剂的消化和消化率测试都与蔗糖进行了比较。结果显示,四种琼脂在 30 至 180 分钟内的水解率各不相同。蔗糖的水解指数(HI)明显高于其他种类(55 ± 0.023%),而坚果琼脂的水解指数最低(32 ± 0.014%)。根据体外血糖预测,所有四种椰子琼脂样品都被归类为中等 GI 甜味剂,而蔗糖被归类为高 GI(69.91 ± 0.02)甜味剂。
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Sugar Tech
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