Pub Date : 2024-02-01Epub Date: 2023-11-14DOI: 10.1089/ast.2023.0017
Alexander E O'Donnell, David K Muirhead, Alexander T Brasier, Enrico Capezzuoli
Carotenoid pigments provide some of the most common exclusively biogenic markers on Earth, and these organic pigments may be present in extraterrestrial life. Raman spectroscopy can be used to identify carotenoids quickly and accurately through the inelastic scattering of laser light. In this study, we show that Raman spectra of organic matter found in hot spring bacterial assemblages exhibit "spectral overprinting" of the carotenoid spectrum by the carbon spectrum as the organic matter progressively breaks down. Here, we present how, with increasing thermal maturity, the relative intensity of the carotenoid spectrum increases, and as maturity increases a low-intensity carbon spectrum forms in the same region as the carotenoid spectrum. This carbon spectrum increases in intensity as the thermal maturity increases further, progressively obscuring the carotenoid spectrum until only the carbon spectrum can be observed. This means key carotenoid biogenic signatures in hot spring deposits may be hidden within carbon spectra. A detailed study of the transition from carotenoid to carbon, Raman spectra may help develop deconvolution processes that assist in positively identifying biogenic carbon over abiogenic carbon. Our results are relevant for the data analysis from the Raman spectroscopy instruments on the Perseverance (National Aeronautics and Space Administration [NASA]) and Rosalind Franklin (European Space Agency [ESA]) rovers.
{"title":"Searching for Life in Hot Spring Carbonate Systems: Investigating Raman Spectra of Carotenoid-Bearing Organic Carbonaceous Inclusions from Travertines of Italy.","authors":"Alexander E O'Donnell, David K Muirhead, Alexander T Brasier, Enrico Capezzuoli","doi":"10.1089/ast.2023.0017","DOIUrl":"10.1089/ast.2023.0017","url":null,"abstract":"<p><p>Carotenoid pigments provide some of the most common exclusively biogenic markers on Earth, and these organic pigments may be present in extraterrestrial life. Raman spectroscopy can be used to identify carotenoids quickly and accurately through the inelastic scattering of laser light. In this study, we show that Raman spectra of organic matter found in hot spring bacterial assemblages exhibit \"spectral overprinting\" of the carotenoid spectrum by the carbon spectrum as the organic matter progressively breaks down. Here, we present how, with increasing thermal maturity, the relative intensity of the carotenoid spectrum increases, and as maturity increases a low-intensity carbon spectrum forms in the same region as the carotenoid spectrum. This carbon spectrum increases in intensity as the thermal maturity increases further, progressively obscuring the carotenoid spectrum until only the carbon spectrum can be observed. This means key carotenoid biogenic signatures in hot spring deposits may be hidden within carbon spectra. A detailed study of the transition from carotenoid to carbon, Raman spectra may help develop deconvolution processes that assist in positively identifying biogenic carbon over abiogenic carbon. Our results are relevant for the data analysis from the Raman spectroscopy instruments on the Perseverance (National Aeronautics and Space Administration [NASA]) and Rosalind Franklin (European Space Agency [ESA]) rovers.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":" ","pages":"163-176"},"PeriodicalIF":4.2,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89716798","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-01Epub Date: 2023-12-26DOI: 10.1089/ast.2023.0012
Denise K Buckner, Morgan J Anderson, Sydney Wisnosky, Walter Alvarado, Michel Nuevo, Amy J Williams, Antonio J Ricco, Anamika, Sara Debic, Lauren Friend, Trinh Hoac, Linda Jahnke, Leslie Radosevich, Ross Williams, Mary Beth Wilhelm
Lipids are a geologically robust class of organics ubiquitous to life as we know it. Lipid-like soluble organics are synthesized abiotically and have been identified in carbonaceous meteorites and on Mars. Ascertaining the origin of lipids on Mars would be a profound astrobiological achievement. We enumerate origin-diagnostic features and patterns in two acyclic lipid classes, fatty acids (i.e., carboxylic acids) and acyclic hydrocarbons, by collecting and analyzing molecular data reported in over 1500 samples from previously published studies of terrestrial and meteoritic organics. We identify 27 combined (15 for fatty acids, 12 for acyclic hydrocarbons) molecular patterns and structural features that can aid in distinguishing biotic from abiotic synthesis. Principal component analysis (PCA) demonstrates that multivariate analyses of molecular features (16 for fatty acids, 14 for acyclic hydrocarbons) can potentially indicate sample origin. Terrestrial lipids are dominated by longer straight-chain molecules (C4-C34 fatty acids, C14-C46 acyclic hydrocarbons), with predominance for specific branched and unsaturated isomers. Lipid-like meteoritic soluble organics are shorter, with random configurations. Organic solvent-extraction techniques are most commonly reported, motivating the design of our novel instrument, the Extractor for Chemical Analysis of Lipid Biomarkers in Regolith (ExCALiBR), which extracts lipids while preserving origin-diagnostic features that can indicate biogenicity.
{"title":"Quantifying Global Origin-Diagnostic Features and Patterns in Biotic and Abiotic Acyclic Lipids for Life Detection.","authors":"Denise K Buckner, Morgan J Anderson, Sydney Wisnosky, Walter Alvarado, Michel Nuevo, Amy J Williams, Antonio J Ricco, Anamika, Sara Debic, Lauren Friend, Trinh Hoac, Linda Jahnke, Leslie Radosevich, Ross Williams, Mary Beth Wilhelm","doi":"10.1089/ast.2023.0012","DOIUrl":"10.1089/ast.2023.0012","url":null,"abstract":"<p><p>Lipids are a geologically robust class of organics ubiquitous to life as we know it. Lipid-like soluble organics are synthesized abiotically and have been identified in carbonaceous meteorites and on Mars. Ascertaining the origin of lipids on Mars would be a profound astrobiological achievement. We enumerate origin-diagnostic features and patterns in two acyclic lipid classes, fatty acids (<i>i.e.,</i> carboxylic acids) and acyclic hydrocarbons, by collecting and analyzing molecular data reported in over 1500 samples from previously published studies of terrestrial and meteoritic organics. We identify 27 combined (15 for fatty acids, 12 for acyclic hydrocarbons) molecular patterns and structural features that can aid in distinguishing biotic from abiotic synthesis. Principal component analysis (PCA) demonstrates that multivariate analyses of molecular features (16 for fatty acids, 14 for acyclic hydrocarbons) can potentially indicate sample origin. Terrestrial lipids are dominated by longer straight-chain molecules (C<sub>4</sub>-C<sub>34</sub> fatty acids, C<sub>14</sub>-C<sub>46</sub> acyclic hydrocarbons), with predominance for specific branched and unsaturated isomers. Lipid-like meteoritic soluble organics are shorter, with random configurations. Organic solvent-extraction techniques are most commonly reported, motivating the design of our novel instrument, the Extractor for Chemical Analysis of Lipid Biomarkers in Regolith (ExCALiBR), which extracts lipids while preserving origin-diagnostic features that can indicate biogenicity.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":" ","pages":"1-35"},"PeriodicalIF":4.2,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139048284","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-01Epub Date: 2023-12-18DOI: 10.1089/ast.2023.0002
Jeffrey T Osterhout, Kenneth A Farley, Meenakshi Wadhwa, Jonathan Treffkorn, Eric Kulczycki
The sample tubes on board NASA's Perseverance rover are designed to contain rocks, regolith, and atmospheric gases and are hermetically sealed on the surface of Mars to minimize sample loss, alteration, and contamination. Following a robust testing program during mission development, it was determined that the helium (He) leak rates of flight-like sample tubes sealed under a range of conditions were typically no greater than ∼10-10 standard cubic centimeters per second (scc/s); leak rates below this value could not be measured since this is the detection limit of commercially available He leak detectors. This limit was adequate to meet mission requirements. However, some scientific objectives could be compromised by sample tube leak rates even below 10-10 scc/s, thus motivating a more sensitive technique for establishing leak rates. This study investigated He leak rates on six flight-like sample tubes using a static mode mass spectrometer. Room temperature He leak rates of the six sample tubes ranged from ∼8.8 × 10-17 to ∼4.6 × 10-14 scc/s. One sample tube was analyzed at eight different temperatures, ranging from -51°C to +42°C, and yielded He leak rates correlated with temperature that varied from ∼1.7 × 10-15 to ∼1.4 × 10-13 scc/s, respectively. Our results confirm and extend previous findings demonstrating that the Mars 2020 sample tube seals are likely to be very leak-tight, with leak rates <10-13 scc/s. These leak rates are sufficiently low that the impact of gas egress or ingress is expected to be negligible.
{"title":"Helium Leak Rate Measurements of Flight-like Mars 2020 Sample Tubes.","authors":"Jeffrey T Osterhout, Kenneth A Farley, Meenakshi Wadhwa, Jonathan Treffkorn, Eric Kulczycki","doi":"10.1089/ast.2023.0002","DOIUrl":"10.1089/ast.2023.0002","url":null,"abstract":"<p><p>The sample tubes on board NASA's Perseverance rover are designed to contain rocks, regolith, and atmospheric gases and are hermetically sealed on the surface of Mars to minimize sample loss, alteration, and contamination. Following a robust testing program during mission development, it was determined that the helium (He) leak rates of flight-like sample tubes sealed under a range of conditions were typically no greater than ∼10<sup>-10</sup> standard cubic centimeters per second (scc/s); leak rates below this value could not be measured since this is the detection limit of commercially available He leak detectors. This limit was adequate to meet mission requirements. However, some scientific objectives could be compromised by sample tube leak rates even below 10<sup>-10</sup> scc/s, thus motivating a more sensitive technique for establishing leak rates. This study investigated He leak rates on six flight-like sample tubes using a static mode mass spectrometer. Room temperature He leak rates of the six sample tubes ranged from ∼8.8 × 10<sup>-17</sup> to ∼4.6 × 10<sup>-14</sup> scc/s. One sample tube was analyzed at eight different temperatures, ranging from -51°C to +42°C, and yielded He leak rates correlated with temperature that varied from ∼1.7 × 10<sup>-15</sup> to ∼1.4 × 10<sup>-13</sup> scc/s, respectively. Our results confirm and extend previous findings demonstrating that the Mars 2020 sample tube seals are likely to be very leak-tight, with leak rates <10<sup>-13</sup> scc/s. These leak rates are sufficiently low that the impact of gas egress or ingress is expected to be negligible.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":" ","pages":"36-43"},"PeriodicalIF":4.2,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10795500/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138796040","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Tommaso Zaccaria, Marien I de Jonge, Jorge Domínguez-Andrés, Mihai G Netea, Kristina Beblo-Vranesevic, Petra Rettberg
The health of astronauts during space travel to new celestial bodies in the Solar System is a critical factor in the planning of a mission. Despite cleaning and decontamination protocols, microorganisms from the Earth have been and will be identified on spacecraft. This raises concerns for human safety and planetary protection, especially if these microorganisms can evolve and adapt to the new environment. In this study, we examined the tolerance of clinically relevant nonfastidious bacterial species that originate from environmental sources (Burkholderia cepacia, Klebsiella pneumoniae, Pseudomonas aeruginosa, and Serratia marcescens) to simulated martian conditions. Our research showed changes in growth and survival of these species in the presence of perchlorates, under desiccating conditions, exposure to ultraviolet radiation, and exposure to martian atmospheric composition and pressure. In addition, our results demonstrate that growth was enhanced by the addition of a martian regolith simulant to the growth media. Additional future research is warranted to examine potential changes in the infectivity, pathogenicity, and virulence of these species with exposure to martian conditions.
{"title":"Survival of Environment-Derived Opportunistic Bacterial Pathogens to Martian Conditions: Is There a Concern for Human Missions to Mars?","authors":"Tommaso Zaccaria, Marien I de Jonge, Jorge Domínguez-Andrés, Mihai G Netea, Kristina Beblo-Vranesevic, Petra Rettberg","doi":"10.1089/ast.2023.0057","DOIUrl":"10.1089/ast.2023.0057","url":null,"abstract":"<p><p>The health of astronauts during space travel to new celestial bodies in the Solar System is a critical factor in the planning of a mission. Despite cleaning and decontamination protocols, microorganisms from the Earth have been and will be identified on spacecraft. This raises concerns for human safety and planetary protection, especially if these microorganisms can evolve and adapt to the new environment. In this study, we examined the tolerance of clinically relevant nonfastidious bacterial species that originate from environmental sources (<i>Burkholderia cepacia</i>, <i>Klebsiella pneumoniae</i>, <i>Pseudomonas aeruginosa</i>, and <i>Serratia marcescens</i>) to simulated martian conditions. Our research showed changes in growth and survival of these species in the presence of perchlorates, under desiccating conditions, exposure to ultraviolet radiation, and exposure to martian atmospheric composition and pressure. In addition, our results demonstrate that growth was enhanced by the addition of a martian regolith simulant to the growth media. Additional future research is warranted to examine potential changes in the infectivity, pathogenicity, and virulence of these species with exposure to martian conditions.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":"24 1","pages":"100-113"},"PeriodicalIF":4.2,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139477810","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-01Epub Date: 2023-12-18DOI: 10.1089/ast.2023.0069
Manasvi Lingam
The ubiquity of information transmission via molecular communication between cells is comprehensively documented on Earth; this phenomenon might even have played a vital role in the origin(s) and early evolution of life. Motivated by these considerations, a simple model for molecular communication entailing the diffusion of signaling molecules from transmitter to receiver is elucidated. The channel capacity C (maximal rate of information transmission) and an optimistic heuristic estimate of the actual information transmission rate are derived for this communication system; the two quantities, especially the latter, are demonstrated to be broadly consistent with laboratory experiments and more sophisticated theoretical models. The channel capacity exhibits a potentially weak dependence on environmental parameters, whereas the actual information transmission rate may scale with the intercellular distance d as ∝ d-4 and could vary substantially across settings. These two variables are roughly calculated for diverse astrobiological environments, ranging from Earth's upper oceans (C ∼ 3.1 × 103 bits/s; ∼ 4.7 × 10-2 bits/s) and deep sea hydrothermal vents (C ∼ 4.2 × 103 bits/s; ∼ 1.2 × 10-1 bits/s) to the hydrocarbon lakes and seas of Titan (C ∼ 3.8 × 103 bits/s; ∼ 2.6 × 10-1 bits/s).
{"title":"Information Transmission via Molecular Communication in Astrobiological Environments.","authors":"Manasvi Lingam","doi":"10.1089/ast.2023.0069","DOIUrl":"10.1089/ast.2023.0069","url":null,"abstract":"<p><p>The ubiquity of information transmission via molecular communication between cells is comprehensively documented on Earth; this phenomenon might even have played a vital role in the origin(s) and early evolution of life. Motivated by these considerations, a simple model for molecular communication entailing the diffusion of signaling molecules from transmitter to receiver is elucidated. The channel capacity <i>C</i> (maximal rate of information transmission) and an optimistic heuristic estimate of the actual information transmission rate <math><mi>ℐ</mi></math> are derived for this communication system; the two quantities, especially the latter, are demonstrated to be broadly consistent with laboratory experiments and more sophisticated theoretical models. The channel capacity exhibits a potentially weak dependence on environmental parameters, whereas the actual information transmission rate may scale with the intercellular distance <i>d</i> as <math><mi>ℐ</mi></math> ∝ <i>d</i><sup>-4</sup> and could vary substantially across settings. These two variables are roughly calculated for diverse astrobiological environments, ranging from Earth's upper oceans (<i>C</i> ∼ 3.1 × 10<sup>3</sup> bits/s; <math><mi>ℐ</mi></math> ∼ 4.7 × 10<sup>-2</sup> bits/s) and deep sea hydrothermal vents (<i>C</i> ∼ 4.2 × 10<sup>3</sup> bits/s; <math><mi>ℐ</mi></math> ∼ 1.2 × 10<sup>-1</sup> bits/s) to the hydrocarbon lakes and seas of Titan (<i>C</i> ∼ 3.8 × 10<sup>3</sup> bits/s; <math><mi>ℐ</mi></math> ∼ 2.6 × 10<sup>-1</sup> bits/s).</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":" ","pages":"84-99"},"PeriodicalIF":4.2,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138796043","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-01Epub Date: 2023-12-28DOI: 10.1089/ast.2023.0025
Catherine Maggiori, Miguel Angel Fernández-Martínez, Louis-Jacques Bourdages, Laura Sánchez-García, Mercedes Moreno-Paz, Jesús Manuel Sobrado, Daniel Carrizo, Álvaro Vicente-Retortillo, Jacqueline Goordial, Lyle G Whyte
In the search for life in our Solar System, Mars remains a promising target based on its proximity and similarity to Earth. When Mars transitioned from a warmer, wetter climate to its current dry and freezing conditions, any putative extant life probably retreated into habitable refugia such as the subsurface or the interior of rocks. Terrestrial cryptoendolithic microorganisms (i.e., those inhabiting rock interiors) thus represent possible modern-day Mars analogs, particularly those from the hyperarid McMurdo Dry Valleys in Antarctica. As DNA is a strong definitive biosignature, given that there is no known abiotic chemistry that can polymerize nucleobases, we investigated DNA detection with MinION sequencing in Antarctic cryptoendoliths after an ∼58-sol exposure in MARTE, a Mars environmental chamber capable of simulating martian temperature, pressure, humidity, ultraviolet (UV) radiation, and atmospheric composition, in conjunction with protein and lipid detection. The MARTE conditions resulted in changes in community composition and DNA, proteins, and cell membrane-derived lipids remained detectable postexposure. Of the multitude of extreme environmental conditions on Mars, UV radiation (specifically UVC) is the most destructive to both cells and DNA. As such, we further investigated if a UVC exposure corresponding to ∼278 martian years would impede DNA detection via MinION sequencing. The MinION was able to successfully detect and sequence DNA after this UVC radiation exposure, suggesting its utility for life detection in future astrobiology missions focused on finding relatively recently exposed biomarkers inside possible martian refugia.
在寻找太阳系生命的过程中,火星仍然是一个很有希望的目标,因为它距离地球很近,而且与地球相似。当火星从温暖湿润的气候过渡到目前干燥冰冻的环境时,任何现存的生命都可能退缩到可居住的避难所,如地表下或岩石内部。因此,地球上的隐石微生物(即栖息在岩石内部的微生物)可能是现代火星的类似物,尤其是那些来自南极洲极度干旱的麦克默多干谷的微生物。由于没有已知的非生物化学物质能使核碱基聚合,DNA 是一种强有力的确定性生物特征,因此我们利用 MinION 测序技术研究了在 MARTE(一种能够模拟火星温度、压力、湿度、紫外线(UV)辐射和大气成分的火星环境舱)中经过 58 溶胶暴露后的南极隐块石中的 DNA 检测情况,同时还进行了蛋白质和脂质检测。MARTE 条件导致群落组成发生变化,暴露后仍能检测到 DNA、蛋白质和细胞膜衍生脂质。在火星上的多种极端环境条件中,紫外线辐射(特别是紫外线)对细胞和 DNA 的破坏性最大。因此,我们进一步研究了相当于 278 火星年的紫外线辐射是否会妨碍通过 MinION 测序法检测 DNA。在这种紫外线辐射照射后,MinION 仍能成功地对 DNA 进行检测和测序,这表明它在未来的天体生物学任务中可用于生命检测,重点是在可能的火星避难所内寻找相对近期暴露的生物标志物。
{"title":"Biosignature Detection and MinION Sequencing of Antarctic Cryptoendoliths After Exposure to Mars Simulation Conditions.","authors":"Catherine Maggiori, Miguel Angel Fernández-Martínez, Louis-Jacques Bourdages, Laura Sánchez-García, Mercedes Moreno-Paz, Jesús Manuel Sobrado, Daniel Carrizo, Álvaro Vicente-Retortillo, Jacqueline Goordial, Lyle G Whyte","doi":"10.1089/ast.2023.0025","DOIUrl":"10.1089/ast.2023.0025","url":null,"abstract":"<p><p>In the search for life in our Solar System, Mars remains a promising target based on its proximity and similarity to Earth. When Mars transitioned from a warmer, wetter climate to its current dry and freezing conditions, any putative extant life probably retreated into habitable refugia such as the subsurface or the interior of rocks. Terrestrial cryptoendolithic microorganisms (<i>i.e.,</i> those inhabiting rock interiors) thus represent possible modern-day Mars analogs, particularly those from the hyperarid McMurdo Dry Valleys in Antarctica. As DNA is a strong definitive biosignature, given that there is no known abiotic chemistry that can polymerize nucleobases, we investigated DNA detection with MinION sequencing in Antarctic cryptoendoliths after an ∼58-sol exposure in MARTE, a Mars environmental chamber capable of simulating martian temperature, pressure, humidity, ultraviolet (UV) radiation, and atmospheric composition, in conjunction with protein and lipid detection. The MARTE conditions resulted in changes in community composition and DNA, proteins, and cell membrane-derived lipids remained detectable postexposure. Of the multitude of extreme environmental conditions on Mars, UV radiation (specifically UVC) is the most destructive to both cells and DNA. As such, we further investigated if a UVC exposure corresponding to ∼278 martian years would impede DNA detection via MinION sequencing. The MinION was able to successfully detect and sequence DNA after this UVC radiation exposure, suggesting its utility for life detection in future astrobiology missions focused on finding relatively recently exposed biomarkers inside possible martian refugia.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":" ","pages":"44-60"},"PeriodicalIF":4.2,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139048282","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-01-01Epub Date: 2023-12-18DOI: 10.1089/ast.2023.0008
Siveen Thlaijeh, Kevin Lepot, Yvain Carpentier, Armelle Riboulleau, Dumitru Duca, Marin Vojkovic, Anuradha Tewari, Johan Sarazin, Mathilde Bon, Nicolas Nuns, Nicolas Tribovillard, Cristian Focsa
Laser desorption-ionization mass spectrometry (MS) shows great potential for in situ molecular analysis of planetary surfaces and microanalysis of space-returned samples or (micro)fossils. Coupled with pyrolysis gas chromatography-mass spectrometry (Py-GC-MS) in ESA's ExoMars project, this technique could help assess further the origin of sulfur-bearing organic matter (OM) recently detected on Mars. To unravel this potential, we analyzed sulfurized microbial OM from ca. 150 million year-old carbonates with laser desorption-ionization mass spectrometry (single- and two-step: LDI-MS and L2MS), in comparison with time-of-flight secondary-ion mass spectrometry (ToF-SIMS), gas chromatography-mass spectrometry (GC-MS), and Py-GC-MS. We show that LDI-MS and L2MS readily detect sulfur-bearing moieties such as (alkyl)thiophenes and (alkyl)benzothiophenes. The mineral matrix, however, made the identification of sulfur-bearing molecules challenging in our L2MS experiment. The dominance of small aromatic hydrocarbons (≤14 carbons) in the LDI-MS and L2MS of the extracted soluble and insoluble OM and of the bulk rock is consistent with the low thermal maturity of the sediment and contrasts with the predominance of larger polycyclic aromatic structures commonly observed in meteorites with these techniques. We detected inorganic ions, in particular VO+, in demineralized OM that likely originate from geoporphyrins, which derive from chlorophylls during sediment diagenesis. Finally, insoluble OM yielded distinct compositions compared with extracted soluble OM, with a greater abundance of ions of mass-to-charge ratio (m/z) over 175 and additional N-moieties. This highlights the potential of laser-assisted MS to decipher the composition of macromolecular OM, in particular to investigate the preservation of biomacromolecules in microfossils. Studies comparing diverse biogenic and abiogenic OM are needed to further assess the use of this technique to search for biosignatures.
激光解吸电离质谱法(MS)在行星表面的原位分子分析和太空返回样品或(微)化石的微观分析方面显示出巨大的潜力。该技术与欧空局ExoMars项目中的热解气相色谱-质谱联用,有助于进一步评估最近在火星上探测到的含硫有机物(OM)的来源。为了揭示这一潜力,我们利用激光解吸电离质谱法(单步和两步:LDI-MS 和 L2MS),与飞行时间二次离子质谱法(ToF-SIMS)、气相色谱-质谱法(GC-MS)和 Py-GC-MS 进行了比较,分析了约 1.5 亿年前碳酸盐岩中的硫化微生物 OM。我们的研究表明,LDI-MS 和 L2MS 可以轻松检测出(烷基)噻吩和(烷基)苯并噻吩等含硫分子。然而,在我们的 L2MS 实验中,矿物基质给含硫分子的鉴定带来了挑战。在提取的可溶性和不可溶性 OM 以及大块岩石的 LDI-MS 和 L2MS 中,芳香族小碳氢化合物(≤14 个碳原子)占主导地位,这与沉积物的低热成熟度相一致,并与使用这些技术在陨石中通常观察到的较大的多环芳香族结构占主导地位形成鲜明对比。我们在脱矿 OM 中检测到了无机离子,特别是 VO+,这些离子很可能来自地卟啉,而地卟啉是沉积物成岩过程中叶绿素的衍生物。最后,与提取的可溶性 OM 相比,不溶性 OM 的组成截然不同,质量电荷比(m/z)超过 175 的离子更为丰富,并增加了 N 原子。这凸显了激光辅助质谱技术在破译大分子 OM 成分,特别是研究微化石中生物大分子保存情况方面的潜力。需要对各种生物源和非生物源 OM 进行比较研究,以进一步评估该技术在寻找生物特征方面的应用。
{"title":"Characterization of Sulfur-Rich Microbial Organic Matter in Jurassic Carbonates Using Laser-Assisted Mass Spectrometry.","authors":"Siveen Thlaijeh, Kevin Lepot, Yvain Carpentier, Armelle Riboulleau, Dumitru Duca, Marin Vojkovic, Anuradha Tewari, Johan Sarazin, Mathilde Bon, Nicolas Nuns, Nicolas Tribovillard, Cristian Focsa","doi":"10.1089/ast.2023.0008","DOIUrl":"10.1089/ast.2023.0008","url":null,"abstract":"<p><p>Laser desorption-ionization mass spectrometry (MS) shows great potential for <i>in situ</i> molecular analysis of planetary surfaces and microanalysis of space-returned samples or (micro)fossils. Coupled with pyrolysis gas chromatography-mass spectrometry (Py-GC-MS) in ESA's ExoMars project, this technique could help assess further the origin of sulfur-bearing organic matter (OM) recently detected on Mars. To unravel this potential, we analyzed sulfurized microbial OM from ca. 150 million year-old carbonates with laser desorption-ionization mass spectrometry (single- and two-step: LDI-MS and L2MS), in comparison with time-of-flight secondary-ion mass spectrometry (ToF-SIMS), gas chromatography-mass spectrometry (GC-MS), and Py-GC-MS. We show that LDI-MS and L2MS readily detect sulfur-bearing moieties such as (alkyl)thiophenes and (alkyl)benzothiophenes. The mineral matrix, however, made the identification of sulfur-bearing molecules challenging in our L2MS experiment. The dominance of small aromatic hydrocarbons (≤14 carbons) in the LDI-MS and L2MS of the extracted soluble and insoluble OM and of the bulk rock is consistent with the low thermal maturity of the sediment and contrasts with the predominance of larger polycyclic aromatic structures commonly observed in meteorites with these techniques. We detected inorganic ions, in particular VO<sup>+</sup>, in demineralized OM that likely originate from geoporphyrins, which derive from chlorophylls during sediment diagenesis. Finally, insoluble OM yielded distinct compositions compared with extracted soluble OM, with a greater abundance of ions of mass-to-charge ratio (<i>m</i>/<i>z</i>) over 175 and additional N-moieties. This highlights the potential of laser-assisted MS to decipher the composition of macromolecular OM, in particular to investigate the preservation of biomacromolecules in microfossils. Studies comparing diverse biogenic and abiogenic OM are needed to further assess the use of this technique to search for biosignatures.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":" ","pages":"61-83"},"PeriodicalIF":4.2,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138796037","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Marc Neveu, Richard Quinn, Laura M Barge, Kathleen L Craft, Christopher R German, Stephanie Getty, Christopher Glein, Macarena Parra, Aaron S Burton, Francesca Cary, Andrea Corpolongo, Lucas Fifer, Andrew Gangidine, Diana Gentry, Christos D Georgiou, Zaid Haddadin, Craig Herbold, Aila Inaba, Seán F Jordan, Hemani Kalucha, Pavel Klier, Kas Knicely, An Y Li, Patrick McNally, Maëva Millan, Neveda Naz, Chinmayee Govinda Raj, Peter Schroedl, Jennifer Timm, Ziming Yang
The 2-week, virtual Future of the Search for Life science and engineering workshop brought together more than 100 scientists, engineers, and technologists in March and April 2022 to provide their expert opinion on the interconnections between life-detection science and technology. Participants identified the advances in measurement and sampling technologies they believed to be necessary to perform in situ searches for life elsewhere in our Solar System, 20 years or more in the future. Among suggested measurements for these searches, those pertaining to three potential indicators of life termed "dynamic disequilibrium," "catalysis," and "informational polymers" were identified as particularly promising avenues for further exploration. For these three indicators, small breakout groups of participants identified measurement needs and knowledge gaps, along with corresponding constraints on sample handling (acquisition and processing) approaches for a variety of environments on Enceladus, Europa, Mars, and Titan. Despite the diversity of these environments, sample processing approaches all tend to be more complex than those that have been implemented on missions or envisioned for mission concepts to date. The approaches considered by workshop breakout groups progress from nondestructive to destructive measurement techniques, and most involve the need for fluid (especially liquid) sample processing. Sample processing needs were identified as technology gaps. These gaps include technology and associated sampling strategies that allow the preservation of the thermal, mechanical, and chemical integrity of the samples upon acquisition; and to optimize the sample information obtained by operating suites of instruments on common samples. Crucially, the interplay between science-driven life-detection strategies and their technological implementation highlights the need for an unprecedented level of payload integration and extensive collaboration between scientists and engineers, starting from concept formulation through mission deployment of life-detection instruments and sample processing systems.
{"title":"Future of the Search for Life: Workshop Report.","authors":"Marc Neveu, Richard Quinn, Laura M Barge, Kathleen L Craft, Christopher R German, Stephanie Getty, Christopher Glein, Macarena Parra, Aaron S Burton, Francesca Cary, Andrea Corpolongo, Lucas Fifer, Andrew Gangidine, Diana Gentry, Christos D Georgiou, Zaid Haddadin, Craig Herbold, Aila Inaba, Seán F Jordan, Hemani Kalucha, Pavel Klier, Kas Knicely, An Y Li, Patrick McNally, Maëva Millan, Neveda Naz, Chinmayee Govinda Raj, Peter Schroedl, Jennifer Timm, Ziming Yang","doi":"10.1089/ast.2022.0158","DOIUrl":"10.1089/ast.2022.0158","url":null,"abstract":"<p><p>The 2-week, virtual Future of the Search for Life science and engineering workshop brought together more than 100 scientists, engineers, and technologists in March and April 2022 to provide their expert opinion on the interconnections between life-detection science and technology. Participants identified the advances in measurement and sampling technologies they believed to be necessary to perform <i>in situ</i> searches for life elsewhere in our Solar System, 20 years or more in the future. Among suggested measurements for these searches, those pertaining to three potential indicators of life termed \"dynamic disequilibrium,\" \"catalysis,\" and \"informational polymers\" were identified as particularly promising avenues for further exploration. For these three indicators, small breakout groups of participants identified measurement needs and knowledge gaps, along with corresponding constraints on sample handling (acquisition and processing) approaches for a variety of environments on Enceladus, Europa, Mars, and Titan. Despite the diversity of these environments, sample processing approaches all tend to be more complex than those that have been implemented on missions or envisioned for mission concepts to date. The approaches considered by workshop breakout groups progress from nondestructive to destructive measurement techniques, and most involve the need for fluid (especially liquid) sample processing. Sample processing needs were identified as technology gaps. These gaps include technology and associated sampling strategies that allow the preservation of the thermal, mechanical, and chemical integrity of the samples upon acquisition; and to optimize the sample information obtained by operating suites of instruments on common samples. Crucially, the interplay between science-driven life-detection strategies and their technological implementation highlights the need for an unprecedented level of payload integration and extensive collaboration between scientists and engineers, starting from concept formulation through mission deployment of life-detection instruments and sample processing systems.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":"24 1","pages":"114-129"},"PeriodicalIF":4.2,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139477715","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Homochirality is one of the signatures of life. Numerous geological and prebiotic chemistry studies have proved that disordered soups containing small organic molecules, gases, liquids, and minerals (such as those containing phosphorous) yielded racemic mixtures of building blocks for biomolecule assembly. Polymers obtained from these bricks should have been enantiopure with functional properties similar to modern biomolecules or heterochiral with some functions such as catalyzing a chemical transformation unspecifically. Up until now, no clues have been found as to how symmetry breaking occurred. In this review, we highlight the principal achievements regarding the emergence of homochirality during the prebiotic synthesis of building blocks. Furthermore, we tried to focus on approaches based on prebiotic systems chemistry (bottom-up) and laboratory scales to simulate plausible prebiotic messy environments for the emergence of life. We aim with this review to assemble, even partially, the puzzle pieces of the origin of life regarding the relevant phenomenon of homochiral symmetry breaking.
{"title":"The Origin and Early Evolution of Life: Homochirality Emergence in Prebiotic Environments.","authors":"Carolina Chieffo, Anastasiia Shvetsova, Fryni Skorda, Augustin Lopez, Michele Fiore","doi":"10.1089/ast.2023.0007","DOIUrl":"10.1089/ast.2023.0007","url":null,"abstract":"<p><p>Homochirality is one of the signatures of life. Numerous geological and prebiotic chemistry studies have proved that disordered soups containing small organic molecules, gases, liquids, and minerals (such as those containing phosphorous) yielded racemic mixtures of building blocks for biomolecule assembly. Polymers obtained from these bricks should have been enantiopure with functional properties similar to modern biomolecules or heterochiral with some functions such as catalyzing a chemical transformation unspecifically. Up until now, no clues have been found as to how symmetry breaking occurred. In this review, we highlight the principal achievements regarding the emergence of homochirality during the prebiotic synthesis of building blocks. Furthermore, we tried to focus on approaches based on prebiotic systems chemistry (bottom-up) and laboratory scales to simulate plausible prebiotic messy environments for the emergence of life. We aim with this review to assemble, even partially, the puzzle pieces of the origin of life regarding the relevant phenomenon of homochiral symmetry breaking.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":" ","pages":"1368-1382"},"PeriodicalIF":4.2,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49673807","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-12-01Epub Date: 2023-11-06DOI: 10.1089/ast.2021.0174
Mercedes Moreno-Paz, Rita Sofia Dos Santos Severino, Laura Sánchez-García, Juan Manuel Manchado, Miriam García-Villadangos, Jacobo Aguirre, Miguel Angel Fernández-Martínez, Daniel Carrizo, Linda Kobayashi, Arwen Dave, Kim Warren-Rhodes, Alfonso Davila, Carol R Stoker, Brian Glass, Víctor Parro
The low organic matter content in the hyperarid core of the Atacama Desert, together with abrupt temperature shifts and high ultraviolet radiation at its surface, makes this region one of the best terrestrial analogs of Mars and one of the best scenarios for testing instrumentation devoted to in situ planetary exploration. We have operated remotely and autonomously the SOLID-LDChip (Signs of Life Detector-Life Detector Chip), an antibody microarray-based sensor instrument, as part of a rover payload during the 2019 NASA Atacama Rover Astrobiology Drilling Studies (ARADS) Mars drilling simulation campaign. A robotic arm collected drilled cuttings down to 80 cm depth and loaded SOLID to process and assay them with LDChip for searching for molecular biomarkers. A remote science team received and analyzed telemetry data and LDChip results. The data revealed the presence of microbial markers from Proteobacteria, Acidobacteria, Bacteroidetes, Actinobacteria, Firmicutes, and Cyanobacteria to be relatively more abundant in the middle layer (40-50 cm). In addition, the detection of several proteins from nitrogen metabolism indicates a pivotal role in the system. These findings were corroborated and complemented on "returned samples" to the lab by a comprehensive analysis that included DNA sequencing, metaproteomics, and a metabolic reconstruction of the sampled area. Altogether, the results describe a relatively complex microbial community with members capable of nitrogen fixation and denitrification, sulfur oxidation and reduction, or triggering oxidative stress responses, among other traits. This remote operation demonstrated the high maturity of SOLID-LDChip as a powerful tool for remote in situ life detection for future missions in the Solar System.
{"title":"Life Detection and Microbial Biomarker Profiling with Signs of Life Detector-Life Detector Chip During a Mars Drilling Simulation Campaign in the Hyperarid Core of the Atacama Desert.","authors":"Mercedes Moreno-Paz, Rita Sofia Dos Santos Severino, Laura Sánchez-García, Juan Manuel Manchado, Miriam García-Villadangos, Jacobo Aguirre, Miguel Angel Fernández-Martínez, Daniel Carrizo, Linda Kobayashi, Arwen Dave, Kim Warren-Rhodes, Alfonso Davila, Carol R Stoker, Brian Glass, Víctor Parro","doi":"10.1089/ast.2021.0174","DOIUrl":"10.1089/ast.2021.0174","url":null,"abstract":"<p><p>The low organic matter content in the hyperarid core of the Atacama Desert, together with abrupt temperature shifts and high ultraviolet radiation at its surface, makes this region one of the best terrestrial analogs of Mars and one of the best scenarios for testing instrumentation devoted to <i>in situ</i> planetary exploration. We have operated remotely and autonomously the SOLID-LDChip (Signs of Life Detector-Life Detector Chip), an antibody microarray-based sensor instrument, as part of a rover payload during the 2019 NASA Atacama Rover Astrobiology Drilling Studies (ARADS) Mars drilling simulation campaign. A robotic arm collected drilled cuttings down to 80 cm depth and loaded SOLID to process and assay them with LDChip for searching for molecular biomarkers. A remote science team received and analyzed telemetry data and LDChip results. The data revealed the presence of microbial markers from Proteobacteria, Acidobacteria, Bacteroidetes, Actinobacteria, Firmicutes, and Cyanobacteria to be relatively more abundant in the middle layer (40-50 cm). In addition, the detection of several proteins from nitrogen metabolism indicates a pivotal role in the system. These findings were corroborated and complemented on \"returned samples\" to the lab by a comprehensive analysis that included DNA sequencing, metaproteomics, and a metabolic reconstruction of the sampled area. Altogether, the results describe a relatively complex microbial community with members capable of nitrogen fixation and denitrification, sulfur oxidation and reduction, or triggering oxidative stress responses, among other traits. This remote operation demonstrated the high maturity of SOLID-LDChip as a powerful tool for remote <i>in situ</i> life detection for future missions in the Solar System.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":" ","pages":"1259-1283"},"PeriodicalIF":3.5,"publicationDate":"2023-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10825288/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"71477512","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}