Searra Foote, Pritvik Sinhadc, Cole Mathis, Sara Imari Walker
The origin of life and the detection of alien life have historically been treated as separate scientific research problems. However, they are not strictly independent. Here, we discuss the need for a better integration of the sciences of life detection and origins of life. Framing these dual problems within the formalism of Bayesian hypothesis testing, we demonstrate via simple examples how high confidence in life detection claims require either (1) a strong prior hypothesis about the existence of life in a particular alien environment, or conversely, (2) signatures of life that are not susceptible to false positives. As a case study, we discuss the role of priors and hypothesis testing in recent results reporting potential detection of life in the venusian atmosphere and in the icy plumes of Enceladus. While many current leading biosignature candidates are subject to false positives because they are not definitive of life, our analyses demonstrate why it is necessary to shift focus to candidate signatures that are definitive. This indicates a necessity to develop methods that lack substantial false positives, by using observables for life that rely on prior hypotheses with strong theoretical and empirical support in identifying defining features of life. Abstract theories developed in pursuit of understanding universal features of life are more likely to be definitive and to apply to life-as-we-don't-know-it. We discuss Molecular Assembly theory as an example of such an observable which is applicable to life detection within the solar system. In the absence of alien examples these are best validated in origin of life experiments, substantiating the need for better integration between origins of life and biosignature science research communities. This leads to a conclusion that extraordinary claims in astrobiology (e.g., definitive detection of alien life) require extraordinary explanations, whereas the evidence itself could be quite ordinary.
{"title":"False Positives and the Challenge of Testing the Alien Hypothesis.","authors":"Searra Foote, Pritvik Sinhadc, Cole Mathis, Sara Imari Walker","doi":"10.1089/ast.2023.0005","DOIUrl":"10.1089/ast.2023.0005","url":null,"abstract":"<p><p>The origin of life and the detection of alien life have historically been treated as separate scientific research problems. However, they are not strictly independent. Here, we discuss the need for a better integration of the sciences of life detection and origins of life. Framing these dual problems within the formalism of Bayesian hypothesis testing, we demonstrate via simple examples how high confidence in life detection claims require either (1) a strong prior hypothesis about the existence of life in a particular alien environment, or conversely, (2) signatures of life that are not susceptible to false positives. As a case study, we discuss the role of priors and hypothesis testing in recent results reporting potential detection of life in the venusian atmosphere and in the icy plumes of Enceladus. While many current leading biosignature candidates are subject to false positives because they are not definitive of life, our analyses demonstrate why it is necessary to shift focus to candidate signatures that are definitive. This indicates a necessity to develop methods that lack substantial false positives, by using observables for life that rely on prior hypotheses with strong theoretical and empirical support in identifying defining features of life. Abstract theories developed in pursuit of understanding universal features of life are more likely to be definitive and to apply to life-as-we-don't-know-it. We discuss Molecular Assembly theory as an example of such an observable which is applicable to life detection within the solar system. In the absence of alien examples these are best validated in origin of life experiments, substantiating the need for better integration between origins of life and biosignature science research communities. This leads to a conclusion that extraordinary claims in astrobiology (<i>e.g.,</i> definitive detection of alien life) require extraordinary explanations, whereas the evidence itself could be quite ordinary.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":"23 11","pages":"1189-1201"},"PeriodicalIF":4.2,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"92152568","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-11-01Epub Date: 2023-07-28DOI: 10.1089/ast.2022.0084
Peter Vickers, Christopher Cowie, Steven J Dick, Catherine Gillen, Cyrille Jeancolas, Lynn J Rothschild, Sean McMahon
Potential biosignatures that offer the promise of extraterrestrial life (past or present) are to be expected in the coming years and decades, whether from within our own solar system, from an exoplanet atmosphere, or otherwise. With each such potential biosignature, the degree of our uncertainty will be the first question asked. Have we really identified extraterrestrial life? How sure are we? This paper considers the problem of unconceived alternative explanations. We stress that articulating our uncertainty requires an assessment of the extent to which we have explored the relevant possibility space. It is argued that, for most conceivable potential biosignatures, we currently have not explored the relevant possibility space very thoroughly at all. Not only does this severely limit the circumstances in which we could reasonably be confident in our detection of extraterrestrial life, it also poses a significant challenge to any attempt to quantify our degree of uncertainty. The discussion leads us to the following recommendation: when it comes specifically to an extraterrestrial life-detection claim, the astrobiology community should follow the uncertainty assessment approach adopted by the Intergovernmental Panel on Climate Change (IPCC).
{"title":"Confidence of Life Detection: The Problem of Unconceived Alternatives.","authors":"Peter Vickers, Christopher Cowie, Steven J Dick, Catherine Gillen, Cyrille Jeancolas, Lynn J Rothschild, Sean McMahon","doi":"10.1089/ast.2022.0084","DOIUrl":"10.1089/ast.2022.0084","url":null,"abstract":"Potential biosignatures that offer the promise of extraterrestrial life (past or present) are to be expected in the coming years and decades, whether from within our own solar system, from an exoplanet atmosphere, or otherwise. With each such potential biosignature, the degree of our uncertainty will be the first question asked. Have we really identified extraterrestrial life? How sure are we? This paper considers the problem of unconceived alternative explanations. We stress that articulating our uncertainty requires an assessment of the extent to which we have explored the relevant possibility space. It is argued that, for most conceivable potential biosignatures, we currently have not explored the relevant possibility space very thoroughly at all. Not only does this severely limit the circumstances in which we could reasonably be confident in our detection of extraterrestrial life, it also poses a significant challenge to any attempt to quantify our degree of uncertainty. The discussion leads us to the following recommendation: when it comes specifically to an extraterrestrial life-detection claim, the astrobiology community should follow the uncertainty assessment approach adopted by the Intergovernmental Panel on Climate Change (IPCC).","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":" ","pages":"1202-1212"},"PeriodicalIF":4.2,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9942554","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-11-01Epub Date: 2023-06-06DOI: 10.1089/ast.2021.0106
Caleb G Schuler, Dale P Winebrenner, W Timothy Elam, Justin Burnett, Bruce W Boles, Jill A Mikucki
Ocean Worlds beneath thick ice covers in our solar system, as well as subglacial lakes on Earth, may harbor biological systems. In both cases, thick ice covers (>100 s of meters) present significant barriers to access. Melt probes are emerging as tools for reaching and sampling these realms due to their small logistical footprint, ability to transport payloads, and ease of cleaning in the field. On Earth, glaciers are immured with various abundances of microorganisms and debris. The potential for bioloads to accumulate around and be dragged by a probe during descent has not previously been investigated. Due to the pristine nature of these environments, minimizing and understanding the risk of forward contamination and considering the potential of melt probes to act as instrument-induced special regions are essential. In this study, we examined the effect that two engineering descent strategies for melt probes have on the dragging of bioloads. We also tested the ability of a field cleaning protocol to rid a common contaminant, Bacillus. These tests were conducted in a synthetic ice block immured with bioloads using the Ice Diver melt probe. Our data suggest minimal dragging of bioloads by melt probes, but conclude that modifications for further minimization and use in special regions should be made.
{"title":"Microbial Transport by a Descending Ice Melting Probe: Implications for Subglacial and Ocean World Exploration.","authors":"Caleb G Schuler, Dale P Winebrenner, W Timothy Elam, Justin Burnett, Bruce W Boles, Jill A Mikucki","doi":"10.1089/ast.2021.0106","DOIUrl":"10.1089/ast.2021.0106","url":null,"abstract":"<p><p>Ocean Worlds beneath thick ice covers in our solar system, as well as subglacial lakes on Earth, may harbor biological systems. In both cases, thick ice covers (>100 s of meters) present significant barriers to access. Melt probes are emerging as tools for reaching and sampling these realms due to their small logistical footprint, ability to transport payloads, and ease of cleaning in the field. On Earth, glaciers are immured with various abundances of microorganisms and debris. The potential for bioloads to accumulate around and be dragged by a probe during descent has not previously been investigated. Due to the pristine nature of these environments, minimizing and understanding the risk of forward contamination and considering the potential of melt probes to act as instrument-induced special regions are essential. In this study, we examined the effect that two engineering descent strategies for melt probes have on the dragging of bioloads. We also tested the ability of a field cleaning protocol to rid a common contaminant, <i>Bacillus</i>. These tests were conducted in a synthetic ice block immured with bioloads using the Ice Diver melt probe. Our data suggest minimal dragging of bioloads by melt probes, but conclude that modifications for further minimization and use in special regions should be made.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":" ","pages":"1153-1164"},"PeriodicalIF":4.2,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10154316","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-11-01Epub Date: 2022-12-19DOI: 10.1089/ast.2021.0071
Marc S Boxberg, Qian Chen, Ana-Catalina Plesa, Julia Kowalski
Ice-covered ocean worlds, such as the Jovian moon Europa, are some of the prime targets for planetary exploration due to their high astrobiological potential. While upcoming space exploration missions, such as the Europa Clipper and JUICE missions, will give us further insight into the local cryoenvironment, any conclusive life detection investigation requires the capability to penetrate and transit the icy shell and access the subglacial ocean directly. Developing robust, autonomous cryorobotic technology for such a mission constitutes an extremely demanding multistakeholder challenge and requires a concentrated interdisciplinary effort between engineers, geoscientists, and astrobiologists. An important tool with which to foster cross-disciplinary work at an early stage of mission preparation is the virtual testbed. In this article, we report on recent progress in the development of an ice transit and performance model for later integration in such a virtual testbed. We introduce a trajectory model that, for the first time, allows for the evaluation of mission-critical parameters, such as transit time and average/overall power supply. Our workflow is applied to selected, existing cryobot designs while taking into consideration different terrestrial, as well as extraterrestrial, deployment scenarios. Specific analyses presented in this study show the tradeoff minimum transit time and maximum efficiency of a cryobot and allow for quantification of different sources of uncertainty to cryobot's trajectory models.
{"title":"Ice Transit and Performance Analysis for Cryorobotic Subglacial Access Missions on Earth and Europa.","authors":"Marc S Boxberg, Qian Chen, Ana-Catalina Plesa, Julia Kowalski","doi":"10.1089/ast.2021.0071","DOIUrl":"10.1089/ast.2021.0071","url":null,"abstract":"<p><p>Ice-covered ocean worlds, such as the Jovian moon Europa, are some of the prime targets for planetary exploration due to their high astrobiological potential. While upcoming space exploration missions, such as the Europa Clipper and JUICE missions, will give us further insight into the local cryoenvironment, any conclusive life detection investigation requires the capability to penetrate and transit the icy shell and access the subglacial ocean directly. Developing robust, autonomous cryorobotic technology for such a mission constitutes an extremely demanding multistakeholder challenge and requires a concentrated interdisciplinary effort between engineers, geoscientists, and astrobiologists. An important tool with which to foster cross-disciplinary work at an early stage of mission preparation is the virtual testbed. In this article, we report on recent progress in the development of an ice transit and performance model for later integration in such a virtual testbed. We introduce a trajectory model that, for the first time, allows for the evaluation of mission-critical parameters, such as transit time and average/overall power supply. Our workflow is applied to selected, existing cryobot designs while taking into consideration different terrestrial, as well as extraterrestrial, deployment scenarios. Specific analyses presented in this study show the tradeoff minimum transit time and maximum efficiency of a cryobot and allow for quantification of different sources of uncertainty to cryobot's trajectory models.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":" ","pages":"1135-1152"},"PeriodicalIF":4.2,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10444315","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Christophe Malaterre, Inge Loes Ten Kate, Mickael Baqué, Vinciane Debaille, John Lee Grenfell, Emmanuelle J Javaux, Nozair Khawaja, Fabian Klenner, Yannick J Lara, Sean McMahon, Keavin Moore, Lena Noack, C H Lucas Patty, Frank Postberg
The concept of a biosignature is widely used in astrobiology to suggest a link between some observation and a biological cause, given some context. The term itself has been defined and used in several ways in different parts of the scientific community involved in the search for past or present life on Earth and beyond. With the ongoing acceleration in the search for life in distant time and/or deep space, there is a need for clarity and accuracy in the formulation and reporting of claims. Here, we critically review the biosignature concept(s) and the associated nomenclature in light of several problems and ambiguities emphasized by recent works. One worry is that these terms and concepts may imply greater certainty than is usually justified by a rational interpretation of the data. A related worry is that terms such as "biosignature" may be inherently misleading, for example, because the divide between life and non-life-and their observable effects-is fuzzy. Another worry is that different parts of the multidisciplinary community may use non-equivalent or conflicting definitions and conceptions, leading to avoidable confusion. This review leads us to identify a number of pitfalls and to suggest how they can be circumvented. In general, we conclude that astrobiologists should exercise particular caution in deciding whether and how to use the concept of biosignature when thinking and communicating about habitability or life. Concepts and terms should be selected carefully and defined explicitly where appropriate. This would improve clarity and accuracy in the formulation of claims and subsequent technical and public communication about some of the most profound and important questions in science and society. With this objective in mind, we provide a checklist of questions that scientists and other interested parties should ask when assessing any reported detection of a "biosignature" to better understand exactly what is being claimed.
{"title":"Is There Such a Thing as a Biosignature?","authors":"Christophe Malaterre, Inge Loes Ten Kate, Mickael Baqué, Vinciane Debaille, John Lee Grenfell, Emmanuelle J Javaux, Nozair Khawaja, Fabian Klenner, Yannick J Lara, Sean McMahon, Keavin Moore, Lena Noack, C H Lucas Patty, Frank Postberg","doi":"10.1089/ast.2023.0042","DOIUrl":"10.1089/ast.2023.0042","url":null,"abstract":"<p><p>The concept of a biosignature is widely used in astrobiology to suggest a link between some observation and a biological cause, given some context. The term itself has been defined and used in several ways in different parts of the scientific community involved in the search for past or present life on Earth and beyond. With the ongoing acceleration in the search for life in distant time and/or deep space, there is a need for clarity and accuracy in the formulation and reporting of claims. Here, we critically review the biosignature concept(s) and the associated nomenclature in light of several problems and ambiguities emphasized by recent works. One worry is that these terms and concepts may imply greater certainty than is usually justified by a rational interpretation of the data. A related worry is that terms such as \"biosignature\" may be inherently misleading, for example, because the divide between life and non-life-and their observable effects-is fuzzy. Another worry is that different parts of the multidisciplinary community may use non-equivalent or conflicting definitions and conceptions, leading to avoidable confusion. This review leads us to identify a number of pitfalls and to suggest how they can be circumvented. In general, we conclude that astrobiologists should exercise particular caution in deciding whether and how to use the concept of biosignature when thinking and communicating about habitability or life. Concepts and terms should be selected carefully and defined explicitly where appropriate. This would improve clarity and accuracy in the formulation of claims and subsequent technical and public communication about some of the most profound and important questions in science and society. With this objective in mind, we provide a checklist of questions that scientists and other interested parties should ask when assessing any reported detection of a \"biosignature\" to better understand exactly what is being claimed.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":"23 11","pages":"1213-1227"},"PeriodicalIF":4.2,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"92152529","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-11-01Epub Date: 2023-10-11DOI: 10.1089/ast.2022.0153
Laura García-Gómez, Tomás Delgado, Francisco J Fortes, Yolanda Del Rosal, Cristina Liñán, Luis Efrén Fernández, Luisa M Cabalín, Javier Laserna
Understanding the past habitable environments of Mars increases the requirement to recognize and examine modern analogs and to evaluate the mechanisms that may preserve biosignatures in them. The phenomenon that originates and preserves possible microbial biosignatures in mineral phases is of particular interest in astrobiology. On Earth, the precipitation of carbonate matrices can be mediated by bacteria. Besides microbialites and other sedimentary structures, carbonate formations can be observed in certain karstic caves. The present work is focused on the remote laser-induced breakdown spectroscopy (LIBS) characterization of cyanobacteria, exploring the possibilities for identification and discrimination on carbonate substrates. For this purpose, the extremophile cyanobacterium Chroococcidiopsis sp. (collected from the Nerja Cave, Malaga, Spain) was analyzed under laboratory-simulated martian conditions in terms of chemical composition and gas pressure. LIBS results related to acquired molecular emission features allowed bacterial differentiation from the colonized mineral substrate. In addition, the limits of detection were estimated with a laboratory-grown culture of the cyanobacterium Microcystis aureginosa. Our results reveal LIBS's capability to detect biological traces under simulated martian conditions. Additionally, the time-resolved analysis of the biological samples demonstrates the selection of optimal temporal conditions as a critical parameter for the preferential acquisition of molecular species in organic material.
{"title":"Remote Laser-Induced Breakdown Spectroscopy of Bacterial Growths in Carbonate Rocks in a Mars-like Atmosphere.","authors":"Laura García-Gómez, Tomás Delgado, Francisco J Fortes, Yolanda Del Rosal, Cristina Liñán, Luis Efrén Fernández, Luisa M Cabalín, Javier Laserna","doi":"10.1089/ast.2022.0153","DOIUrl":"10.1089/ast.2022.0153","url":null,"abstract":"<p><p>Understanding the past habitable environments of Mars increases the requirement to recognize and examine modern analogs and to evaluate the mechanisms that may preserve biosignatures in them. The phenomenon that originates and preserves possible microbial biosignatures in mineral phases is of particular interest in astrobiology. On Earth, the precipitation of carbonate matrices can be mediated by bacteria. Besides microbialites and other sedimentary structures, carbonate formations can be observed in certain karstic caves. The present work is focused on the remote laser-induced breakdown spectroscopy (LIBS) characterization of cyanobacteria, exploring the possibilities for identification and discrimination on carbonate substrates. For this purpose, the extremophile cyanobacterium <i>Chroococcidiopsis</i> sp. (collected from the Nerja Cave, Malaga, Spain) was analyzed under laboratory-simulated martian conditions in terms of chemical composition and gas pressure. LIBS results related to acquired molecular emission features allowed bacterial differentiation from the colonized mineral substrate. In addition, the limits of detection were estimated with a laboratory-grown culture of the cyanobacterium <i>Microcystis aureginosa</i>. Our results reveal LIBS's capability to detect biological traces under simulated martian conditions. Additionally, the time-resolved analysis of the biological samples demonstrates the selection of optimal temporal conditions as a critical parameter for the preferential acquisition of molecular species in organic material.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":" ","pages":"1179-1188"},"PeriodicalIF":4.2,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41189650","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
In this article, we introduce some simple models, based on rolling dice, to explore mechanisms proposed to explain planetary habitability. The idea is to study these selection mechanisms in an analytically tractable setting, isolating their consequences from other details which can confound or obscure their effect in more realistic models. We find that the observable of interest, the face value shown on the die, "improves" over time in all models. For two of the more popular ideas, Selection by Survival and Sequential Selection, this is down to sampling effects. A modified version of Sequential Selection, Sequential Selection with Memory, implies a statistical tendency for systems to improve over time. We discuss the implications of this and its relationship to the ideas of the "Inhabitance Paradox" and the "Gaian bottleneck."
{"title":"Does Gaia Play Dice? Simple Models of Non-Darwinian Selection.","authors":"Rudy Arthur, Arwen Nicholson","doi":"10.1089/ast.2023.0036","DOIUrl":"10.1089/ast.2023.0036","url":null,"abstract":"<p><p>In this article, we introduce some simple models, based on rolling dice, to explore mechanisms proposed to explain planetary habitability. The idea is to study these selection mechanisms in an analytically tractable setting, isolating their consequences from other details which can confound or obscure their effect in more realistic models. We find that the observable of interest, the face value shown on the die, \"improves\" over time in all models. For two of the more popular ideas, Selection by Survival and Sequential Selection, this is down to sampling effects. A modified version of Sequential Selection, Sequential Selection with Memory, implies a statistical tendency for systems to improve over time. We discuss the implications of this and its relationship to the ideas of the \"Inhabitance Paradox\" and the \"Gaian bottleneck.\"</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":"23 11","pages":"1238-1244"},"PeriodicalIF":4.2,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"92152567","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-10-01Epub Date: 2023-09-29DOI: 10.1089/ast.2022.0119
Christopher E Carr, José L Ramírez-Colón, Daniel Duzdevich, Sam Lee, Masateru Taniguchi, Takahito Ohshiro, Yuki Komoto, Jason M Soderblom, M T Zuber
Growing evidence of the potential habitability of Ocean Worlds across our solar system is motivating the advancement of technologies capable of detecting life as we know it-sharing a common ancestry or physicochemical origin with life on Earth-or don't know it, representing a distinct emergence of life different than our one known example. Here, we propose the Electronic Life-detection Instrument for Enceladus/Europa (ELIE), a solid-state single-molecule instrument payload that aims to search for life based on the detection of amino acids and informational polymers (IPs) at the parts per billion to trillion level. As a first proof-of-principle in a laboratory environment, we demonstrate the single-molecule detection of the amino acid L-proline at a 10 μM concentration in a compact system. Based on ELIE's solid-state quantum electronic tunneling sensing mechanism, we further propose the quantum property of the HOMO-LUMO gap (energy difference between a molecule's highest energy-occupied molecular orbital and lowest energy-unoccupied molecular orbital) as a novel metric to assess amino acid complexity. Finally, we assess the potential of ELIE to discriminate between abiotically and biotically derived α-amino acid abundance distributions to reduce the false positive risk for life detection. Nanogap technology can also be applied to the detection of nucleobases and short sequences of IPs such as, but not limited to, RNA and DNA. Future missions may utilize ELIE to target preserved biosignatures on the surface of Mars, extant life in its deep subsurface, or life or its biosignatures in a plume, surface, or subsurface of ice moons such as Enceladus or Europa. One-Sentence Summary: A solid-state nanogap can determine the abundance distribution of amino acids, detect nucleic acids, and shows potential for detecting life as we know it and life as we don't know it.
{"title":"Solid-State Single-Molecule Sensing with the Electronic Life-Detection Instrument for Enceladus/Europa (ELIE).","authors":"Christopher E Carr, José L Ramírez-Colón, Daniel Duzdevich, Sam Lee, Masateru Taniguchi, Takahito Ohshiro, Yuki Komoto, Jason M Soderblom, M T Zuber","doi":"10.1089/ast.2022.0119","DOIUrl":"10.1089/ast.2022.0119","url":null,"abstract":"<p><p>Growing evidence of the potential habitability of Ocean Worlds across our solar system is motivating the advancement of technologies capable of detecting life as we know it-sharing a common ancestry or physicochemical origin with life on Earth-or don't know it, representing a distinct emergence of life different than our one known example. Here, we propose the Electronic Life-detection Instrument for Enceladus/Europa (ELIE), a solid-state single-molecule instrument payload that aims to search for life based on the detection of amino acids and informational polymers (IPs) at the parts per billion to trillion level. As a first proof-of-principle in a laboratory environment, we demonstrate the single-molecule detection of the amino acid L-proline at a 10 μM concentration in a compact system. Based on ELIE's solid-state quantum electronic tunneling sensing mechanism, we further propose the quantum property of the HOMO-LUMO gap (energy difference between a molecule's highest energy-occupied molecular orbital and lowest energy-unoccupied molecular orbital) as a novel metric to assess amino acid complexity. Finally, we assess the potential of ELIE to discriminate between abiotically and biotically derived α-amino acid abundance distributions to reduce the false positive risk for life detection. Nanogap technology can also be applied to the detection of nucleobases and short sequences of IPs such as, but not limited to, RNA and DNA. Future missions may utilize ELIE to target preserved biosignatures on the surface of Mars, extant life in its deep subsurface, or life or its biosignatures in a plume, surface, or subsurface of ice moons such as Enceladus or Europa. One-Sentence Summary: A solid-state nanogap can determine the abundance distribution of amino acids, detect nucleic acids, and shows potential for detecting life as we know it and life as we don't know it.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":" ","pages":"1056-1070"},"PeriodicalIF":4.2,"publicationDate":"2023-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41101442","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-10-01Epub Date: 2023-07-31DOI: 10.1089/ast.2023.0022
Christos D Georgiou, Christopher McKay, Jean-Louis Reymond
An ideal life detection instrument would have high sensitivity but be insensitive to abiotic processes and would be capable of detecting life with alternate molecular structures. In this study, we propose that catalytic activity can be the basis of a nearly ideal life detection instrument. There are several advantages to catalysis as an agnostic life detection method. Demonstrating catalysis does not necessarily require culturing/growing the alien life and in fact may persist even in dead biomass for some time, and the amplification by catalysis is large even by minute amounts of catalysts and, hence, can be readily detected against abiotic background rates. In specific, we propose a hydrolytic catalysis detection instrument that could detect activity in samples of extraterrestrial organic material from unknown life. The instrument uses chromogenic assay-based detection of various hydrolytic catalytic activities, which are matched to corresponding artificial substrates having the same, chromogenic (preferably fluorescent) upon release, group; D- and L-enantiomers of these substrates can be used to also answer the question whether unknown life is chiral. Since catalysis is a time-proportional product-concentration amplification process, hydrolytic catalytic activity can be measured on a sample of even a minute size, and with instruments based on, for example, optofluidic chip technology.
{"title":"Organic Catalytic Activity as a Method for Agnostic Life Detection.","authors":"Christos D Georgiou, Christopher McKay, Jean-Louis Reymond","doi":"10.1089/ast.2023.0022","DOIUrl":"10.1089/ast.2023.0022","url":null,"abstract":"<p><p>An ideal life detection instrument would have high sensitivity but be insensitive to abiotic processes and would be capable of detecting life with alternate molecular structures. In this study, we propose that catalytic activity can be the basis of a nearly ideal life detection instrument. There are several advantages to catalysis as an agnostic life detection method. Demonstrating catalysis does not necessarily require culturing/growing the alien life and in fact may persist even in dead biomass for some time, and the amplification by catalysis is large even by minute amounts of catalysts and, hence, can be readily detected against abiotic background rates. In specific, we propose a hydrolytic catalysis detection instrument that could detect activity in samples of extraterrestrial organic material from unknown life. The instrument uses chromogenic assay-based detection of various hydrolytic catalytic activities, which are matched to corresponding artificial substrates having the same, chromogenic (preferably fluorescent) upon release, group; D- and L-enantiomers of these substrates can be used to also answer the question whether unknown life is chiral. Since catalysis is a time-proportional product-concentration amplification process, hydrolytic catalytic activity can be measured on a sample of even a minute size, and with instruments based on, for example, optofluidic chip technology.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":" ","pages":"1118-1127"},"PeriodicalIF":4.2,"publicationDate":"2023-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9901996","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-10-01Epub Date: 2023-09-06DOI: 10.1089/ast.2023.0016
Matthew L Wallace, Nicholas Tallarida, Wayne W Schubert, James Lambert
Flow cytometry is a potential technology for in situ life detection on icy moons (such as Enceladus and Europa) and on the polar ice caps of Mars. We developed a method for using flow cytometry to positively identify four classes of biomarkers using exogenous fluorescent stains: nucleic acids, proteins, carbohydrates, and lipids. We demonstrated the effectiveness of exogenous stains with six known organisms and known abiotic material and showed that the cytometer is easily able to distinguish between the known organisms and the known abiotic material using the exogenous stains. To simulate a life-detection experiment on an icy world lander, we used six natural samples with unknown biotic and abiotic content. We showed that flow cytometry can identify all four biomarkers using the exogenous stains and can separate the biotic material from the known abiotic material on scatter plots. Exogenous staining techniques would likely be used in conjunction with intrinsic fluorescence, clustering, and sorting for a more complete and capable life-detection instrument on an icy moon lander.
{"title":"Life Detection on Icy Moons Using Flow Cytometry and Exogenous Fluorescent Stains.","authors":"Matthew L Wallace, Nicholas Tallarida, Wayne W Schubert, James Lambert","doi":"10.1089/ast.2023.0016","DOIUrl":"10.1089/ast.2023.0016","url":null,"abstract":"<p><p>Flow cytometry is a potential technology for <i>in situ</i> life detection on icy moons (such as Enceladus and Europa) and on the polar ice caps of Mars. We developed a method for using flow cytometry to positively identify four classes of biomarkers using exogenous fluorescent stains: nucleic acids, proteins, carbohydrates, and lipids. We demonstrated the effectiveness of exogenous stains with six known organisms and known abiotic material and showed that the cytometer is easily able to distinguish between the known organisms and the known abiotic material using the exogenous stains. To simulate a life-detection experiment on an icy world lander, we used six natural samples with unknown biotic and abiotic content. We showed that flow cytometry can identify all four biomarkers using the exogenous stains and can separate the biotic material from the known abiotic material on scatter plots. Exogenous staining techniques would likely be used in conjunction with intrinsic fluorescence, clustering, and sorting for a more complete and capable life-detection instrument on an icy moon lander.</p>","PeriodicalId":8645,"journal":{"name":"Astrobiology","volume":" ","pages":"1071-1082"},"PeriodicalIF":4.2,"publicationDate":"2023-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10160741","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}