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Chapter 5: Major Biological Innovations in the History of Life on Earth. 第 5 章:地球生命史上的重大生物创新。
IF 4.2 3区 物理与天体物理 Q2 ASTRONOMY & ASTROPHYSICS Pub Date : 2024-03-01 DOI: 10.1089/ast.2021.0119
G Ozan Bozdag, Nadia Szeinbaum, Peter L Conlin, Kimberly Chen, Santiago Mestre Fos, Amanda Garcia, Petar I Penev, George A Schaible, Gareth Trubl

All organisms living on Earth descended from a single, common ancestral population of cells, known as LUCA-the last universal common ancestor. Since its emergence, the diversity and complexity of life have increased dramatically. This chapter focuses on four key biological innovations throughout Earth's history that had a significant impact on the expansion of phylogenetic diversity, organismal complexity, and ecospace habitation. First is the emergence of the last universal common ancestor, LUCA, which laid the foundation for all life-forms on Earth. Second is the evolution of oxygenic photosynthesis, which resulted in global geochemical and biological transformations. Third is the appearance of a new type of cell-the eukaryotic cell-which led to the origin of a new domain of life and the basis for complex multicellularity. Fourth is the multiple independent origins of multicellularity, resulting in the emergence of a new level of complex individuality. A discussion of these four key events will improve our understanding of the intertwined history of our planet and its inhabitants and better inform the extent to which we can expect life at different degrees of diversity and complexity elsewhere.

生活在地球上的所有生物都是从一个单一的、共同的细胞祖先群体(被称为 LUCA--最后的普遍共同祖先)演化而来的。自其出现以来,生命的多样性和复杂性急剧增加。本章重点介绍地球历史上对系统发育多样性、生物复杂性和生态空间居住的扩展产生重大影响的四项关键生物创新。首先是最后一个普遍共同祖先 LUCA 的出现,它奠定了地球上所有生命形式的基础。其次是含氧光合作用的进化,它导致了全球地球化学和生物转化。第三是一种新型细胞--真核细胞的出现,它导致了一个新的生命领域的起源,并为复杂的多细胞性奠定了基础。第四是多细胞性的多重独立起源,导致出现了新层次的复杂个体性。对这四个关键事件的讨论将增进我们对地球及其居民相互交织的历史的理解,并更好地告知我们在多大程度上可以期待其他地方出现不同程度的多样性和复杂性的生命。
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引用次数: 0
Correction to: Astrobiology 2023;23(12):1303-1336. Correction to:Astrobiology 2023;23(12):1303-1336.
IF 4.2 3区 物理与天体物理 Q2 ASTRONOMY & ASTROPHYSICS Pub Date : 2024-03-01 DOI: 10.1089/ast.2022.0133.correx
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引用次数: 0
Chapter 4: A Geological and Chemical Context for the Origins of Life on Early Earth. 第 4 章:早期地球生命起源的地质和化学背景。
IF 4.2 3区 物理与天体物理 Q2 ASTRONOMY & ASTROPHYSICS Pub Date : 2024-03-01 DOI: 10.1089/ast.2021.0139
Laura E Rodriguez, Thiago Altair, Ninos Y Hermis, Tony Z Jia, Tyler P Roche, Luke H Steller, Jessica M Weber

Within the first billion years of Earth's history, the planet transformed from a hot, barren, and inhospitable landscape to an environment conducive to the emergence and persistence of life. This chapter will review the state of knowledge concerning early Earth's (Hadean/Eoarchean) geochemical environment, including the origin and composition of the planet's moon, crust, oceans, atmosphere, and organic content. It will also discuss abiotic geochemical cycling of the CHONPS elements and how these species could have been converted to biologically relevant building blocks, polymers, and chemical networks. Proposed environments for abiogenesis events are also described and evaluated. An understanding of the geochemical processes under which life may have emerged can better inform our assessment of the habitability of other worlds, the potential complexity that abiotic chemistry can achieve (which has implications for putative biosignatures), and the possibility for biochemistries that are vastly different from those on Earth.

在地球历史的头十亿年里,地球从一个炎热、贫瘠和荒凉的环境转变为一个有利于生命出现和持续存在的环境。本章将回顾有关地球早期(Hadean/Eoarchean)地球化学环境的知识状况,包括地球月球、地壳、海洋、大气和有机物的起源和组成。它还将讨论 CHONPS 元素的非生物地球化学循环,以及这些物种如何转化为与生物相关的构件、聚合物和化学网络。此外,还将描述和评估拟议的生物发生环境。了解生命可能出现的地球化学过程可以更好地帮助我们评估其他世界的可居住性、非生物化学可能达到的复杂性(这对假定的生物特征有影响)以及与地球上的生物化学大不相同的可能性。
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引用次数: 0
Chapter 8: Searching for Life Beyond Earth. 第 8 章:寻找地球之外的生命。
IF 4.2 3区 物理与天体物理 Q2 ASTRONOMY & ASTROPHYSICS Pub Date : 2024-03-01 DOI: 10.1089/ast.2021.0104
Luoth Chou, Natalie Grefenstette, Schuyler Borges, Tristan Caro, Enrico Catalano, Chester E Harman, Jordan McKaig, Chinmayee Govinda Raj, Gareth Trubl, Amber Young

The search for life beyond Earth necessitates a rigorous and comprehensive examination of biosignatures, the types of observable imprints that life produces. These imprints and our ability to detect them with advanced instrumentation hold the key to our understanding of the presence and abundance of life in the universe. Biosignatures are the chemical or physical features associated with past or present life and may include the distribution of elements and molecules, alone or in combination, as well as changes in structural components or physical processes that would be distinct from an abiotic background. The scientific and technical strategies used to search for life on other planets include those that can be conducted in situ to planetary bodies and those that could be observed remotely. This chapter discusses numerous strategies that can be employed to look for biosignatures directly on other planetary bodies using robotic exploration including those that have been deployed to other planetary bodies, are currently being developed for flight, or will become a critical technology on future missions. Search strategies for remote observations using current and planned ground-based and space-based telescopes are also described. Evidence from spectral absorption, emission, or transmission features can be used to search for remote biosignatures and technosignatures. Improving our understanding of biosignatures, their production, transformation, and preservation on Earth can enhance our search efforts to detect life on other planets.

要寻找地球以外的生命,就必须对生物特征进行严格而全面的研究,即生命产生的各类可观察到的印记。这些印记以及我们利用先进仪器探测它们的能力,是我们了解宇宙中生命的存在和丰富程度的关键。生物特征是与过去或现在的生命有关的化学或物理特征,可能包括元素和分子的单独或组合分布,以及与非生物背景截然不同的结构成分或物理过程的变化。用于在其他行星上寻找生命的科学和技术战略包括可以在行星体上就地进行的战略和可以远程观测的战略。本章讨论了可用于利用机器人探索直接在其他行星体上寻找生物特征的众多策略,包括那些已经部署到其他行星体、目前正在开发用于飞行或将成为未来任务关键技术的策略。还介绍了利用现有和计划中的地面和空间望远镜进行远程观测的搜索战略。来自光谱吸收、发射或透射特征的证据可用于搜索远程生物特征和技术特征。提高我们对生物特征及其在地球上的产生、转化和保存的认识,可以加强我们探测其他行星上生命的搜索工作。
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引用次数: 0
Foreword to the Astrobiology Primer 3.0. 天体生物学入门 3.0》前言。
IF 4.2 3区 物理与天体物理 Q2 ASTRONOMY & ASTROPHYSICS Pub Date : 2024-03-01 DOI: 10.1089/ast.2023.0116
Lucas Mix
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引用次数: 0
Life Is Uncertain: Inherent Variability Exhibited by Organisms, and at Higher Levels of Biological Organization. 生命是不确定的:生物体和更高层次生物组织固有的变异性。
IF 4.2 3区 物理与天体物理 Q2 ASTRONOMY & ASTROPHYSICS Pub Date : 2024-03-01 Epub Date: 2024-02-13 DOI: 10.1089/ast.2023.0094
Joseph W Bull

Organisms act stochastically. A not uncommon view in the ecological literature is that this is mainly due to the observer having insufficient information or a stochastic environment-and not partly because organisms themselves respond with inherent unpredictability. In this study, I compile the evidence that contradicts that view. Organisms generate uncertainty internally, which results in irreducible stochastic responses. I consider why: for instance, stochastic responses are associated with greater adaptability to changing environments and resource availability. Over longer timescales, biologically generated uncertainty influences behavior, evolution, and macroecological processes. Indeed, it could be stated that organisms are systems defined by the internal generation, magnification, and record-keeping of uncertainty as inputs to responses. Important practical implications arise if organisms can indeed be defined by an association with specific classes of inherent uncertainty: not least that isolating those signatures then provides a potential means for detecting life, for considering the forms that life could theoretically take, and for exploring the wider limits to how life might become distributed. These are all fundamental goals in astrobiology.

生物的行为是随机的。生态学文献中一种并不罕见的观点认为,这主要是由于观察者掌握的信息不足或环境随机所致,而不是部分由于生物本身的反应具有固有的不可预测性。在本研究中,我整理了与这一观点相悖的证据。生物体内部会产生不确定性,从而产生不可还原的随机反应。我考虑了其中的原因:例如,随机反应与对不断变化的环境和资源可用性的更强适应性有关。在更长的时间尺度上,生物产生的不确定性会影响行为、进化和宏观生态过程。事实上,可以说生物是由内部产生、放大和记录不确定性作为反应输入而定义的系统。如果生物体确实可以通过与特定类别的固有不确定性相关联来定义,那么就会产生重要的实际影响:尤其是,分离这些特征将为探测生命、考虑生命在理论上可能采取的形式以及探索生命如何分布的更广泛限制提供潜在的手段。这些都是天体生物学的基本目标。
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引用次数: 0
Considerations for Detecting Organic Indicators of Metabolism on Enceladus. 检测恩克拉多斯新陈代谢有机指标的考虑因素。
IF 4.2 3区 物理与天体物理 Q2 ASTRONOMY & ASTROPHYSICS Pub Date : 2024-03-01 DOI: 10.1089/ast.2023.0074
Laura M Barge, Gregory P Fournier

Enceladus is of interest to astrobiology and the search for life since it is thought to host active hydrothermal activity and habitable conditions. It is also possible that the organics detected on Enceladus may indicate an active prebiotic or biotic system; in particular, the conditions on Enceladus may favor mineral-driven protometabolic reactions. When including metabolism-related biosignatures in Enceladus mission concepts, it is necessary to base these in a clearer understanding of how these signatures could also be produced prebiotically. In addition, postulating which biological metabolisms to look for on Enceladus requires a non-Earth-centric approach since the details of biological metabolic pathways are heavily shaped by adaptation to geochemical conditions over the planet's history. Creating metabolism-related organic detection objectives for Enceladus missions, therefore, requires consideration of how metabolic systems may operate differently on another world, while basing these speculations on observed Earth-specific microbial processes. In addition, advances in origin-of-life research can play a critical role in distinguishing between interpretations of any future organic detections on Enceladus, and the discovery of an extant prebiotic system would be a transformative astrobiological event in its own right.

土卫二对天体生物学和生命探索具有重要意义,因为它被认为具有活跃的热液活动和适宜居住的条件。在恩克拉多斯上探测到的有机物也有可能预示着一个活跃的前生物或生物系统;特别是,恩克拉多斯上的条件可能有利于矿物驱动的原代谢反应。在将与新陈代谢有关的生物特征纳入恩克拉多斯飞行任务概念时,有必要在更清楚地了解这些特征如何也能通过前生物产生的基础上进行。此外,由于生物新陈代谢途径的细节在很大程度上取决于对地球历史上地球化学条件的适应情况,因此要在恩克拉多斯星球上寻找哪些生物新陈代谢需要一种非地球中心的方法。因此,要为土卫六飞行任务制定与新陈代谢有关的有机物探测目标,就需要考虑新陈代谢系统在另一个世界的运行方式可能会有所不同,同时将这些推测建立在观测到的地球特有微生物过程的基础上。此外,生命起源研究的进展可以在区分对今后在恩克拉多斯上探测到的任何有机物的解释方面发挥关键作用,发现一个现存的前生物系统本身就是一个变革性的天体生物学事件。
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引用次数: 0
Fluorescence Microscopy with Deep UV, Near UV, and Visible Excitation for In Situ Detection of Microorganisms. 利用深紫外、近紫外和可见光激发的荧光显微镜对微生物进行现场检测。
IF 4.2 3区 物理与天体物理 Q2 ASTRONOMY & ASTROPHYSICS Pub Date : 2024-03-01 DOI: 10.1089/ast.2023.0020
Noel Case, Nikki Johnston, Jay Nadeau

We report a simple, inexpensive design of a fluorescence microscope with light-emitting diode (LED) excitation for detection of labeled and unlabeled microorganisms in mineral substrates. The use of deep UV (DUV) excitation with visible emission requires no specialized optics or slides and can be implemented easily and inexpensively using an oblique illumination geometry. DUV excitation (<280 nm) is preferable to near UV (365 nm) for avoidance of mineral autofluorescence. When excited with DUV, unpigmented bacteria show two emission peaks: one in the near UV ∼320 nm, corresponding to proteins, and another peak in the blue to green range, corresponding to flavins and/or reduced nicotinamide adenine dinucleotide (NADH). Many commonly used dyes also show secondary excitation peaks in the DUV, with identical emission spectra and quantum yields as their primary peak. However, DUV fails to excite key biosignature molecules, especially chlorophyll in cyanobacteria. Visible excitation (violet to blue) also results in less mineral autofluorescence than near UV, and most autofluorescence in the minerals seen here is green, so that red dyes and red autofluorescence of chlorophyll and porphyrins are readily distinguished. The pairing of DUV and near UV or visible excitation, with emission across the visible, represents the most thorough approach to detection of labeled and unlabeled bacteria in soil and rock.

我们报告了一种设计简单、成本低廉的发光二极管(LED)激发荧光显微镜,用于检测矿物基质中已标记和未标记的微生物。使用深紫外(DUV)激发和可见光发射不需要专门的光学器件或载玻片,而且可以使用斜照明几何结构轻松实现,成本低廉。DUV 激发 (
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引用次数: 0
Chapter 1: The Astrobiology Primer 3.0. 第 1 章:天体生物学入门 3.0。
IF 4.2 3区 物理与天体物理 Q2 ASTRONOMY & ASTROPHYSICS Pub Date : 2024-03-01 DOI: 10.1089/ast.2021.0129
Micah J Schaible, Nadia Szeinbaum, G Ozan Bozdag, Luoth Chou, Natalie Grefenstette, Stephanie Colón-Santos, Laura E Rodriguez, M J Styczinski, Jennifer L Thweatt, Zoe R Todd, Alberto Vázquez-Salazar, Alyssa Adams, M N Araújo, Thiago Altair, Schuyler Borges, Dana Burton, José Alberto Campillo-Balderas, Eryn M Cangi, Tristan Caro, Enrico Catalano, Kimberly Chen, Peter L Conlin, Z S Cooper, Theresa M Fisher, Santiago Mestre Fos, Amanda Garcia, D M Glaser, Chester E Harman, Ninos Y Hermis, M Hooks, K Johnson-Finn, Owen Lehmer, Ricardo Hernández-Morales, Kynan H G Hughson, Rodrigo Jácome, Tony Z Jia, Jeffrey J Marlow, Jordan McKaig, Veronica Mierzejewski, Israel Muñoz-Velasco, Ceren Nural, Gina C Oliver, Petar I Penev, Chinmayee Govinda Raj, Tyler P Roche, Mary C Sabuda, George A Schaible, Serhat Sevgen, Pritvik Sinhadc, Luke H Steller, Kamil Stelmach, J Tarnas, Frank Tavares, Gareth Trubl, Monica Vidaurri, Lena Vincent, Jessica M Weber, Maggie Meiqi Weng, Regina L Wilpiszeki, Amber Young

The Astrobiology Primer 3.0 (ABP3.0) is a concise introduction to the field of astrobiology for students and others who are new to the field of astrobiology. It provides an entry into the broader materials in this supplementary issue of Astrobiology and an overview of the investigations and driving hypotheses that make up this interdisciplinary field. The content of this chapter was adapted from the other 10 articles in this supplementary issue and thus represents the contribution of all the authors who worked on these introductory articles. The content of this chapter is not exhaustive and represents the topics that the authors found to be the most important and compelling in a dynamic and changing field.

天体生物学入门 3.0》(ABP3.0)是对天体生物学领域的简明介绍,适用于初涉天体生物学领域的学生和其他人。它提供了一个进入本期《天体生物学》增刊中更广泛材料的入口,并概述了构成这一跨学科领域的研究和驱动性假设。本章内容改编自本增刊的其他 10 篇文章,因此代表了所有参与这些介绍性文章的作者的贡献。本章内容并非详尽无遗,而是作者们认为在这个充满活力、不断变化的领域中最重要、最引人注目的主题。
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引用次数: 0
Chapter 11: Astrobiology Education, Engagement, and Resources. 第 11 章:天体生物学教育、参与和资源。
IF 4.2 3区 物理与天体物理 Q2 ASTRONOMY & ASTROPHYSICS Pub Date : 2024-03-01 DOI: 10.1089/ast.2021.0098
M J Styczinski, D M Glaser, M Hooks, T Z Jia, K Johnson-Finn, G A Schaible, M J Schaible

Although astrobiology is a relatively new field of science, the questions it seeks to answer (e.g., "What is life?" "What does life require?") have been investigated for millennia. In recent decades, formal programs dedicated specifically to the science of astrobiology have been organized at academic, governmental, and institutional scales. Constructing educational programs around this emerging science relies on input from broad expertise and backgrounds. Because of the interdisciplinary nature of this field, career pathways in astrobiology often begin in more specific fields such as astronomy, geology, or biology, and unlike many other sciences, typically involve substantial training outside one's primary discipline. The recent origin of astrobiology as a field of science has led to strong collaborations with education research in the development of astrobiology courses and offers a unique instructional laboratory for further pedagogical studies. This chapter is intended to support students, educators, and early career scientists by connecting them to materials and opportunities that the authors and colleagues have found advantageous. Annotated lists of relevant programs and resources are included as a series of appendices in the supplementary material.

虽然天体生物学是一个相对较新的科学领域,但它所要回答的问题(如 "什么是生命?""生命需要什么?")已经研究了几千年。近几十年来,学术界、政府和机构组织了专门针对天体生物学科学的正式项目。围绕这门新兴科学构建教育计划,有赖于广泛的专业知识和背景的投入。由于这一领域的跨学科性质,天体生物学的职业道路通常从天文学、地质学或生物学等更具体的领域开始,而且与许多其他科学不同,通常需要在个人的主要学科之外接受大量培训。最近,天体生物学作为一个科学领域的起源,导致了在开发天体生物学课程方面与教育研究的紧密合作,并为进一步的教学研究提供了一个独特的教学实验室。本章旨在为学生、教育工作者和早期职业科学家提供支持,将他们与作者及其同事认为有利的材料和机会联系起来。相关项目和资源的注释列表作为一系列附录载于补充材料中。
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引用次数: 0
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