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In Memoriam: David Hochberg (1957-2023). 悼念:戴维-霍赫伯格(1957-2023)。
IF 3.5 3区 物理与天体物理 Q2 ASTRONOMY & ASTROPHYSICS Pub Date : 2024-06-27 DOI: 10.1089/ast.2024.0030
Celia Blanco, Thomas Buhse, Pedro Cintas, Isabel Herreros, Jean-Claude Micheau, Federico Morán, Juan Pérez-Mercader, Josep M Ribó, Michael Stich, Cristóbal Viedma
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引用次数: 0
Ultraviolet Resistance of Microorganisms Isolated from Uranium-Rich Minerals from Perus, Brazil. 从巴西佩鲁斯富铀矿物中分离出的微生物的抗紫外线能力
IF 4.2 3区 物理与天体物理 Q1 Agricultural and Biological Sciences Pub Date : 2024-06-10 DOI: 10.1089/ast.2022.0125
Bárbara Poletto, Gabriel Gonçalves Silva, Ana Carolina Souza Ramos de Carvalho, Roberta Almeida Vincenzi, Eiji Yamassaki de Almeida, Douglas Galante, Amanda Gonçalves Bendia, Fabio Rodrigues

The district of Perus, located in the city of São Paulo, Brazil, is renowned for its weathered granitic-pegmatitic masses, which harbor a significant number of uraniferous minerals that contribute to ionizing radiation levels up to 20 times higher than the background levels. In this study, aseptically collected mineral samples from the area were utilized to isolate 15 microorganisms, which were subjected to pre-screening tests involving UV-C and UV-B radiation. The microorganisms that exhibited the highest resistance to ultraviolet (UV) radiation were selected for the construction of survival curves for UV-C, broad-band UV-B, and solar simulation resistance testing. Subsequently, the four strains that demonstrated superior survival capabilities under UV radiation exposure were chosen for 16S rRNA gene sequencing. Among these, Nocardioides sp. O4R and Nocardioides sp. MA2R demonstrated the most promising outcomes in the UV radiation resistance assessments, showcasing comparable performance to the well-established radioresistant model organism Deinococcus radiodurans. These findings underscore the potential of naturally occurring high-radiation environments as valuable resources for the investigation of UV-resistant microorganisms.

位于巴西圣保罗市的佩鲁斯地区因其风化花岗岩-伟晶岩岩块而闻名,这些岩块中蕴藏着大量的含铀矿物,导致电离辐射水平比本底水平高出 20 倍。在这项研究中,利用从该地区无菌采集的矿物样本分离出 15 种微生物,并对这些微生物进行了紫外线-C 和紫外线-B 辐射预筛选测试。筛选出对紫外线(UV)辐射具有最强抵抗力的微生物,用于构建抗 UV-C、宽带 UV-B 和太阳模拟测试的存活曲线。随后,选择了在紫外线辐射下生存能力较强的四种菌株进行 16S rRNA 基因测序。其中,Nocardioides sp. O4R 和 Nocardioides sp. MA2R 在紫外线辐射抗性评估中表现出最有希望的结果,其表现可与成熟的抗辐射模式生物 Deinococcus radiodurans 相媲美。这些发现强调了天然高辐射环境作为研究抗紫外线微生物的宝贵资源的潜力。
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引用次数: 0
The Concept of Life on Venus Informs the Concept of Habitability. 金星生命的概念启发了宜居性的概念。
IF 3.5 3区 物理与天体物理 Q1 Agricultural and Biological Sciences Pub Date : 2024-06-01 Epub Date: 2024-05-27 DOI: 10.1089/ast.2023.0106
Charles S Cockell, John E Hallsworth, Sean McMahon, Stephen R Kane, Peter M Higgins

An enduring question in astrobiology is how we assess extraterrestrial environments as being suitable for life. We suggest that the most reliable assessments of the habitability of extraterrestrial environments are made with respect to the empirically determined limits to known life. We discuss qualitatively distinct categories of habitability: empirical habitability that is constrained by the observed limits to biological activity; habitability sensu stricto, which is defined with reference to the known or unknown limits to the activity of all known organisms; and habitability sensu lato (habitability in the broadest sense), which is circumscribed by the limit of all possible life in the universe, which is the most difficult (and perhaps impossible) to determine. We use the cloud deck of Venus, which is temperate but incompatible with known life, as an example to elaborate and hypothesize on these limits.

天体生物学的一个永恒问题是我们如何评估地外环境是否适合生命存在。我们认为,对地外环境宜居性最可靠的评估是根据经验确定的已知生命极限进行的。我们讨论了可居住性在质量上的不同类别:受观测到的生物活动极限限制的经验可居住性;严格意义上的可居住性,其定义参考了所有已知生物活动的已知或未知极限;以及广义上的可居住性(最广义的可居住性),其范围是宇宙中所有可能生命的极限,这是最难以确定的(也许是不可能确定的)。我们以金星云层为例,对这些极限进行阐述和假设,金星云层气候温和,但与已知生命不相容。
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引用次数: 0
Astrobiology by Gavriil Tikhov. 天体生物学》,加夫利尔-季霍夫著。
IF 3.5 3区 物理与天体物理 Q1 Agricultural and Biological Sciences Pub Date : 2024-06-01 DOI: 10.1089/ast.2024.0036
Charles S Cockell
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引用次数: 0
Exploiting the Unique Biology of Caenorhabditis elegans to Launch Neurodegeneration Studies in Space. 利用秀丽隐杆线虫的独特生物学特性开展太空神经变性研究
IF 3.5 3区 物理与天体物理 Q1 Agricultural and Biological Sciences Pub Date : 2024-06-01 DOI: 10.1089/ast.2023.0096
Tatyana Itkin, Ksenia Unger, Yair Barak, Amit Yovel, Liya Stekolshchik, Linoy Ego, Yana Aydinov, Yoram Gerchman, Amir Sapir

The 21st century is likely to be the first century in which large-scale short- and long-term space missions become common. Accordingly, an ever-increasing body of research is focusing on understanding the effects of current and future space expeditions on human physiology in health and disease. Yet the complex experimental environment, the small number of participants, and the high cost of space missions are among the primary factors that hinder a better understanding of the impact of space missions on human physiology. The goal of our research was to develop a cost-effective, compact, and easy-to-manipulate system to address questions related to human health and disease in space. This initiative was part of the Ramon SpaceLab program, an annual research-based learning program designed to cultivate high school students' involvement in space exploration by facilitating experiments aboard the International Space Station (ISS). In the present study, we used the nematode Caenorhabditis elegans (C. elegans), a well-suited model organism, to investigate the effect of space missions on neurodegeneration-related processes. Our study specifically focused on the level of aggregation of Huntington's disease-causing polyglutamine stretch-containing (PolyQ) proteins in C. elegans muscles, the canonical system for studying neurodegeneration in this organism. We compared animals expressing PolyQ proteins grown onboard the ISS with their genetically identical siblings grown on Earth and observed a significant difference in the number of aggregates between the two populations. Currently, it is challenging to determine whether this effect stems from developmental or morphological differences between the cultures or is a result of life in space. Nevertheless, our results serve as a proof of concept and open a new avenue for utilizing C. elegans to address various open questions in space studies, including the effects of space conditions on the onset and development of neurodegenerative diseases.

21 世纪很可能是大规模短期和长期太空任务变得普遍的第一个世纪。因此,越来越多的研究集中于了解当前和未来的太空探险对人类健康和疾病生理的影响。然而,复杂的实验环境、较少的参与人数以及太空任务的高昂成本是阻碍更好地了解太空任务对人类生理学影响的主要因素。我们的研究目标是开发一种成本效益高、结构紧凑、易于操作的系统,以解决与太空中人类健康和疾病有关的问题。这项计划是雷蒙太空实验室计划的一部分,该计划是一项基于研究的年度学习计划,旨在通过在国际空间站(ISS)上进行实验,培养高中生参与太空探索的兴趣。在本研究中,我们利用线虫(Caenorhabditis elegans)这一非常适合的模式生物来研究太空任务对神经退行性变相关过程的影响。我们的研究特别关注秀丽隐杆线虫肌肉中导致亨廷顿氏病的含多聚谷氨酰胺伸展(PolyQ)蛋白的聚集水平,这是研究该生物体神经退行性变的典型系统。我们将在国际空间站上生长的表达 PolyQ 蛋白的动物与在地球上生长的基因相同的同胞进行了比较,观察到两个种群之间的聚集体数量存在显著差异。目前还很难确定这种效应是源于培养物之间的发育或形态差异,还是太空生活的结果。不过,我们的研究结果证明了这一概念,并为利用秀丽隐杆线虫解决太空研究中的各种未决问题(包括太空条件对神经退行性疾病的发生和发展的影响)开辟了一条新途径。
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引用次数: 0
Exoplanet Innovators Interview: Sara Seager Interviews Ignas Snellen. 系外行星创新者访谈:萨拉-西格尔(Sara Seager)采访伊格纳斯-斯奈伦(Ignas Snellen)。
IF 3.5 3区 物理与天体物理 Q1 Agricultural and Biological Sciences Pub Date : 2024-06-01 Epub Date: 2024-06-05 DOI: 10.1089/ast.2024.0044
Sara Seager
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引用次数: 0
Sharp Rise in Cosmic Ray Irradiation of Organisms on Earth Caused by a Nearby SN Shockwave Passage. 邻近 SN 冲击波通道导致地球上生物体受到的宇宙射线辐照急剧增加。
IF 3.5 3区 物理与天体物理 Q1 Agricultural and Biological Sciences Pub Date : 2024-06-01 Epub Date: 2024-05-07 DOI: 10.1089/ast.2023.0126
A A Shchepkin, G I Vasilyev, V M Ostryakov, A K Pavlov

The work considers the modelling of nearby supernova (SN) effects on Earth's biosphere via cosmic rays (CRs) accelerated by shockwaves. The rise of the radiation background on Earth resulted from the external irradiation by CR high-energy particles and internal radiation in organisms by the decay of cosmogenic 14C is evaluated. We have taken into account that the CR flux near Earth goes up steeply when the shockwave crosses the Solar System, while in previous works the CR transport was considered as purely diffusive. Our simulations demonstrate a high rise of the external ionization of the environments at Earth's surface by atmospheric cascade particles that penetrate the first 70-100 m of water depth. Also, the cosmogenic 14C decay is able to irradiate the entire biosphere and deep ocean organisms. We analyzed the probable increase in mutation rate and estimated the distance between Earth and an SN, where the lethal effects of irradiation are possible. Our simulations demonstrate that for SN energy of around 1051 erg the lethal distance could be ∼18 pc.

该研究考虑了附近超新星(SN)通过冲击波加速的宇宙射线(CRs)对地球生物圈的影响建模。我们评估了 CR 高能粒子的外部辐照和宇宙源 14C 的衰变对生物体内部辐射造成的地球辐射本底的上升。我们考虑到,当冲击波穿过太阳系时,地球附近的 CR 通量会急剧上升,而在以前的研究中,CR 的传输被认为是纯扩散的。我们的模拟结果表明,大气层中的级联粒子在地球表面环境中的外部电离程度很高,这些粒子穿透了水深的前 70-100 米。此外,宇宙源 14C 衰变能够辐照整个生物圈和深海生物。我们分析了突变率可能增加的情况,并估算了地球与 SN 之间的距离,在这个距离上,辐照可能产生致命影响。我们的模拟结果表明,当SN能量约为1051尔格时,致命距离可达18 pc。
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引用次数: 0
Quantifying the Potential for Nitrate-Dependent Iron Oxidation on Early Mars: Implications for the Interpretation of Gale Crater Organics. 量化早期火星上依赖硝酸盐的铁氧化潜力:对解释盖尔陨坑有机物的影响。
IF 3.5 3区 物理与天体物理 Q1 Agricultural and Biological Sciences Pub Date : 2024-06-01 Epub Date: 2024-05-24 DOI: 10.1089/ast.2023.0109
Lucas M Fifer, Michael L Wong

Geological evidence and atmospheric and climate models suggest habitable conditions occurred on early Mars, including in a lake in Gale crater. Instruments aboard the Curiosity rover measured organic compounds of unknown provenance in sedimentary mudstones at Gale crater. Additionally, Curiosity measured nitrates in Gale crater sediments, which suggests that nitrate-dependent Fe2+ oxidation (NDFO) may have been a viable metabolism for putative martian life. Here, we perform the first quantitative assessment of an NDFO community that could have existed in an ancient Gale crater lake and quantify the long-term preservation of biological necromass in lakebed mudstones. We find that an NDFO community would have the capacity to produce cell concentrations of up to 106 cells mL-1, which is comparable to microbes in Earth's oceans. However, only a concentration of <104 cells mL-1, due to organisms that inefficiently consume less than 10% of precipitating nitrate, would be consistent with the abundance of organics found at Gale. We also find that meteoritic sources of organics would likely be insufficient as a sole source for the Gale crater organics, which would require a separate source, such as abiotic hydrothermal or atmospheric production or possibly biological production from a slowly turning over chemotrophic community.

地质证据以及大气和气候模型表明,火星早期曾出现过适宜居住的条件,包括盖尔陨石坑中的一个湖泊。好奇号 "漫游车搭载的仪器测量了盖尔陨石坑沉积泥岩中来源不明的有机化合物。此外,好奇号还在盖尔陨石坑沉积物中测量到了硝酸盐,这表明依赖硝酸盐的Fe2+氧化(NDFO)可能是推定火星生命的一种可行的新陈代谢方式。在这里,我们首次对可能存在于古盖尔陨石坑湖中的 NDFO 群落进行了定量评估,并对湖床泥岩中长期保存的生物尸体进行了定量分析。我们发现,NDFO群落有能力产生高达106 cells mL-1的细胞浓度,这与地球海洋中的微生物相当。然而,由于生物体对沉淀硝酸盐的消耗不足 10%,因此细胞浓度仅为 4 cells mL-1,这与盖尔发现的有机物丰度相符。我们还发现,陨石来源的有机物可能不足以成为盖尔陨石坑有机物的唯一来源,这就需要一个单独的来源,例如非生物热液或大气生产,或者可能是缓慢翻转的化能群落的生物生产。
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引用次数: 0
Rebuilding the Habitable Zone from the Bottom up with Computational Zones. 利用计算区自下而上重建宜居带。
IF 3.5 3区 物理与天体物理 Q1 Agricultural and Biological Sciences Pub Date : 2024-06-01 Epub Date: 2024-06-10 DOI: 10.1089/ast.2023.0035
Caleb Scharf, Olaf Witkowski

Computation, if treated as a set of physical processes that act on information represented by states of matter, encompasses biological systems, digital systems, and other constructs and may be a fundamental measure of living systems. The opportunity for biological computation, represented in the propagation and selection-driven evolution of information-carrying organic molecular structures, has been partially characterized in terms of planetary habitable zones (HZs) based on primary conditions such as temperature and the presence of liquid water. A generalization of this concept to computational zones (CZs) is proposed, with constraints set by three principal characteristics: capacity (including computation rates), energy, and instantiation (or substrate, including spatial extent). CZs naturally combine traditional habitability factors, including those associated with biological function that incorporate the chemical milieu, constraints on nutrients and free energy, as well as element availability. Two example applications are presented by examining the fundamental thermodynamic work efficiency and Landauer limit of photon-driven biological computation on planetary surfaces and of generalized computation in stellar energy capture structures (a.k.a. Dyson structures). It is suggested that CZs that involve nested structures or substellar objects could manifest unique observational signatures as cool far-infrared emitters. While these latter scenarios are entirely hypothetical, they offer a useful, complementary introduction to the potential universality of CZs.

如果把计算看作是作用于以物质状态为代表的信息的一系列物理过程,那么它就包含了生物系统、数字系统和其他构造,并且可能是生命系统的基本衡量标准。生物计算的机会体现在携带信息的有机分子结构的传播和选择驱动的进化过程中,根据温度和液态水的存在等主要条件,行星宜居带(HZs)已被部分地描述出来。我们提出了将这一概念推广到计算区(CZs)的建议,其约束条件由三个主要特征设定:能力(包括计算速度)、能量和实例化(或基质,包括空间范围)。CZs 自然结合了传统的可居住性因素,包括与生物功能相关的化学环境、对营养物质和自由能量的限制以及元素的可用性。通过研究行星表面光子驱动生物计算的基本热力学工作效率和朗道尔极限,以及恒星能量捕获结构(又称戴森结构)中的广义计算,介绍了两个应用实例。有人认为,涉及嵌套结构或子恒星天体的 CZ 可能会表现出独特的观测特征,成为冷远红外发射器。虽然后一种情况完全是假设性的,但它们为 CZs 潜在的普遍性提供了有益的补充性介绍。
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引用次数: 0
Evaluating Pigments as a Biosignature: Abiotic/Prebiotic Synthesis of Pigments and Pigment Mimics in Planetary Environments. 评估作为生物特征的色素:行星环境中色素和色素模拟物的非生物/前生物合成。
IF 4.2 3区 物理与天体物理 Q1 Agricultural and Biological Sciences Pub Date : 2024-05-20 DOI: 10.1089/ast.2023.0006
Laura E Rodriguez, Jessica M Weber, Laura M Barge

Pigments serve a multitude of functions in biology including light harvesting for photosynthesis, radiation protection, membrane support, and defense. The ubiquity of pigments-especially within extremophiles found in high-radiation, high-salinity, and dry environments-and their detectability via mission-ready techniques have elevated these molecules as promising targets in the search for evidence of life elsewhere. Moreover, the detection of pigments has been proposed as a "smoking gun" for extraterrestrial life as it has been suggested that these molecules cannot be generated abiotically. However, while pigments may hold promise as a biosignature, current understanding of their possible prebiotic origins remains understudied and uncertain. Better understanding of the abiotic synthesis of pigments is critical for evaluating the biogenicity of any pigment detected during missions, including by the Mars Perseverance rover or from returned samples. Compounding this uncertainty is the broad definition of pigment as it includes any compound capable of absorbing visible light and by itself does not specify a particular chemical motif. While not experimentally verified, there are promising prebiotic routes for generating pigments including hemes, chlorophylls, and carotenoids. Herein, we review the biochemistry of pigments, the inherent assumptions made when searching for these molecules in the field, their abiotic synthesis in industry and prebiotic reactions, prebiotically relevant molecules that can mimic their spectral signatures, and implications/recommendations for future work.

色素在生物学中具有多种功能,包括光合作用采光、辐射防护、膜支持和防御。色素无处不在,特别是在高辐射、高盐度和干燥环境中的嗜极生物中,而且可以通过任务就绪技术进行检测,这使得这些分子成为寻找其他地方生命证据的有希望的目标。此外,色素的检测被认为是地外生命的 "烟枪",因为有人认为这些分子不可能在非生物环境中产生。然而,尽管色素可能有望成为一种生物特征,但目前对其可能的前生物起源的了解仍然不足且不确定。更好地了解色素的非生物合成对于评估任务期间(包括 "坚毅 "号火星探测器或从返回的样本中)检测到的任何色素的生物起源性至关重要。使这种不确定性更加复杂的是色素的定义过于宽泛,因为它包括任何能够吸收可见光的化合物,而且其本身并不指定特定的化学结构。虽然未经实验验证,但有希望通过前生物途径生成色素,包括庚烷、叶绿素和类胡萝卜素。在此,我们回顾了色素的生物化学、在实地寻找这些分子时的固有假设、它们在工业中的非生物合成和益生反应、可模仿其光谱特征的益生相关分子,以及对未来工作的影响/建议。
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引用次数: 0
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