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Digital and Intelligent Rehabilitation Technologies in Stroke and Neurological Disorders: A Systematic Review of Artificial Intelligence, Virtual Reality, Gamification, and Emerging Therapeutic Platforms in Neurorehabilitation. 数字和智能康复技术在中风和神经系统疾病中的应用:人工智能、虚拟现实、游戏化和新兴的神经康复治疗平台的系统综述。
IF 3.7 3区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2026-02-09 DOI: 10.3390/bioengineering13020195
Majeda M El-Banna, Moattar Raza Rizvi, Waqas Sami, Ankita Sharma, Rushdy R Atyeh

Artificial intelligence (AI), virtual reality (VR), gamification, and telerehabilitation are increasingly incorporated into neurorehabilitation to deliver adaptive, personalized, and remotely accessible interventions for individuals with stroke and other neurological disorders. These technologies aim to address key limitations in conventional rehabilitation by enhancing training intensity, patient engagement, accessibility, and real-time monitoring. This systematic review synthesizes evidence from clinical and simulation-based studies evaluating AI-assisted systems, non-AI gamified platforms, VR/exergames, telerehabilitation models, and simulation-driven architectures across neurological populations. A comprehensive search of PubMed, Scopus, Embase, CINAHL, and Web of Science (2010-2025) identified randomized controlled trials, pilot and quasi-experimental studies, telerehabilitation systems, VR/exergame interventions, AI-based adaptive tools, and computational or model-driven investigations, guided by a revised PICO framework. Data were extracted using a standardized template, with studies categorized by design, population, technological modality, and outcome domain. Risk of bias was assessed using validated tools, and GRADE was applied to stroke-specific clinical outcomes. Twenty-two studies met the inclusion criteria, encompassing both clinical trials and simulation/modeling research. Clinical studies reported improvements in motor function, balance, gait, swallowing, cognition, and psychosocial well-being, often accompanied by high usability and adherence. AI-enabled systems facilitated adaptive difficulty adjustment, automated feedback, and individualized progression, while non-AI platforms demonstrated strong engagement and meaningful functional gains. Simulation studies provided valuable insights into algorithm behavior, sensor-based modeling, and system optimization. Despite promising multi-domain benefits, methodological heterogeneity, limited long-term follow-up, and inconsistent AI transparency remain key challenges, underscoring the need for standardized outcomes, explainable AI, inclusive design, and robust multicenter trials.

人工智能(AI)、虚拟现实(VR)、游戏化和远程康复越来越多地被纳入神经康复,为中风和其他神经疾病患者提供适应性、个性化和远程可及的干预措施。这些技术旨在通过提高训练强度、患者参与度、可及性和实时监测来解决传统康复的关键限制。本系统综述综合了来自临床和基于模拟的研究的证据,这些研究评估了人工智能辅助系统、非人工智能游戏化平台、VR/游戏、远程康复模型和神经学人群的模拟驱动架构。在PubMed, Scopus, Embase, CINAHL和Web of Science(2010-2025)的综合搜索中,确定了随机对照试验,试点和准实验研究,远程康复系统,VR/exergame干预,基于人工智能的自适应工具,以及由修订的PICO框架指导的计算或模型驱动的调查。使用标准化模板提取数据,并按设计、人口、技术模式和结果域对研究进行分类。使用经过验证的工具评估偏倚风险,并将GRADE应用于卒中特异性临床结果。22项研究符合纳入标准,包括临床试验和模拟/建模研究。临床研究报告了运动功能、平衡、步态、吞咽、认知和心理社会健康的改善,通常伴随着高可用性和依从性。支持ai的系统促进了自适应难度调整、自动反馈和个性化进程,而非ai平台则展示了强大的用户粘性和有意义的功能增益。仿真研究为算法行为、基于传感器的建模和系统优化提供了有价值的见解。尽管有多领域的好处,但方法的异质性、有限的长期随访和不一致的人工智能透明度仍然是主要的挑战,强调了对标准化结果、可解释的人工智能、包容性设计和稳健的多中心试验的需求。
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引用次数: 0
Development of a Type 2 Diabetes Prediction Model Using Specific Health Checkup Data and Extraction of Predictive Factors. 基于特定健康体检数据的2型糖尿病预测模型的建立及预测因素的提取。
IF 3.7 3区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2026-02-09 DOI: 10.3390/bioengineering13020194
Kenichiro Shimai, Kazuki Ohashi, Teppei Suzuki, Ryota Konno, Ryuichiro Ueda, Masami Mukai, Katsuhiko Ogasawara

Background: Specific health checkups in Japan aim to prevent and detect non-communicable diseases (NCDs). Lifestyle information and non-invasive measurements obtained during these checkups are valuable for population health monitoring. This study aimed to develop a predictive model for type 2 diabetes mellitus (T2DM) using only non-invasive measurements and to identify key predictors.

Methods: A retrospective observational study was conducted using linked health checkup records and medical claims from a city in Japan. Logistic regression was performed to predict a T2DM diagnosis.

Results: A total of 409 of the 1363 participants were diagnosed with T2DM, including 285 of the 950 participants aged 40-74 years and 124 of the 413 participants aged ≥75 years. The model achieved an area under the receiver operating characteristic curve of 0.680 for those aged 40-74 years and 0.665 for those aged ≥75 years, indicating moderate discrimination. Key predictors included male sex, use of antihypertensive drugs, walking speed, and eating habits within 2 h before bedtime. In particular, male sex, having a slower walking speed, and not eating within 2 h before bedtime were positively associated with T2DM diagnosis. Conversely, the absence of antihypertensive or lipid-lowering medications was negatively associated with T2DM diagnosis.

Conclusion: A model based solely on non-invasive measurements moderately identified individuals at risk for T2DM in this community-based Japanese population. Routinely collected health checkup data may support early identification and targeted preventive strategies.

背景:日本的具体健康检查旨在预防和发现非传染性疾病(NCDs)。在这些检查中获得的生活方式信息和非侵入性测量对人口健康监测很有价值。本研究旨在建立仅使用非侵入性测量的2型糖尿病(T2DM)预测模型,并确定关键预测因子。方法:利用日本某城市的相关健康检查记录和医疗索赔进行回顾性观察研究。采用Logistic回归预测T2DM诊断。结果:1363名参与者中共有409名被诊断为T2DM,其中950名40-74岁的参与者中有285名,413名≥75岁的参与者中有124名。40 ~ 74岁受试者受试者工作特征曲线下面积为0.680,≥75岁受试者受试者工作特征曲线下面积为0.665,表明识别程度中等。主要预测因素包括男性、使用抗高血压药物、步行速度和睡前2小时内的饮食习惯。尤其是男性、走路速度较慢、睡前2小时内不进食与T2DM的诊断呈正相关。相反,缺乏抗高血压或降脂药物与T2DM的诊断呈负相关。结论:仅基于非侵入性测量的模型中等程度地确定了日本社区人群中有T2DM风险的个体。定期收集的健康检查数据可支持早期识别和有针对性的预防策略。
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引用次数: 0
Applications of 3D Printing and Artificial Intelligence in Healthcare Management: A Narrative Review. 3D打印和人工智能在医疗保健管理中的应用:述评
IF 3.7 3区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2026-02-09 DOI: 10.3390/bioengineering13020196
Conrado Domínguez Trujillo, Donato Monopoli Forleo, Carmen Delia Dávila Quintana, Juan Mora Delgado

The integration of 3D printing and artificial intelligence is transforming healthcare management by driving innovations in personalized care, supply chain operations, and clinical workflows. This review offers a comprehensive overview and in-depth analysis of recent (2018-2025) applications where AI technologies enhance 3D printing within healthcare. We explore how AI-powered design and optimization facilitate the creation of patient-specific medical devices, implants, and even bioprinted tissues, while intelligent process control increases both quality and efficiency. Additionally, we examine regulatory and ethical considerations, including the evolution of frameworks for AI-enabled devices, as well as challenges in data governance, validation, and equitable access. The review takes a global perspective, presenting real-world case studies that showcase both successful implementations and ongoing challenges. We also discuss various perspectives and controversies, such as the balance between innovation and safety in autonomous AI design, and highlight areas where further research is needed. In contrast to previous narrative reviews that focus solely on clinical applications or technical aspects, this review uniquely evaluates the combined impact of AI and 3D printing on healthcare management-including cost-effectiveness, governance, decision-making processes, and point-of-care manufacturing. This work is particularly valuable for hospital administrators, clinical operations leaders, health policymakers, and biomedical innovation teams seeking to understand the broader implications of AI-enhanced 3D printing in healthcare management. Nevertheless, despite promising advancements, the field is constrained by heterogeneous evidence, a lack of standardized evaluation metrics, and insufficient long-term outcome data, which together limit the ability to fully assess the sustained impact of AI-integrated 3D printing in healthcare environments.

3D打印和人工智能的集成通过推动个性化护理、供应链运营和临床工作流程的创新,正在改变医疗保健管理。本综述全面概述和深入分析了人工智能技术在医疗保健领域增强3D打印的最新应用(2018-2025)。我们探索人工智能驱动的设计和优化如何促进患者特定医疗设备、植入物甚至生物打印组织的创建,同时智能过程控制提高了质量和效率。此外,我们还研究了监管和道德方面的考虑,包括人工智能设备框架的演变,以及数据治理、验证和公平访问方面的挑战。该综述采用了全球视角,展示了现实世界的案例研究,展示了成功的实现和正在进行的挑战。我们还讨论了各种观点和争议,例如自主人工智能设计中创新与安全之间的平衡,并强调了需要进一步研究的领域。与以往仅关注临床应用或技术方面的叙述性综述不同,本综述独特地评估了人工智能和3D打印对医疗保健管理的综合影响,包括成本效益、治理、决策过程和护理点制造。这项工作对于医院管理者、临床操作领导者、卫生政策制定者和生物医学创新团队来说尤其有价值,他们希望了解人工智能增强的3D打印在医疗保健管理中的广泛影响。然而,尽管取得了有希望的进展,但该领域受到异质性证据、缺乏标准化评估指标和长期结果数据不足的限制,这些因素共同限制了全面评估人工智能集成3D打印在医疗保健环境中持续影响的能力。
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引用次数: 0
Development and Preliminary Assessment of a Tendon-Driven Thumb-Index Prosthesis with a Novel Hobbed-Pulley Actuation Mechanism. 基于新型滚刀-滑轮驱动机构的肌腱驱动拇指指数假肢的研制与初步评估。
IF 3.7 3区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2026-02-09 DOI: 10.3390/bioengineering13020197
Patrícia Gomes, Pedro J S C P Sousa, João Nunes, Stephanos P Zaoutsos, Susana Dias, Paulo J Tavares, Pedro M G J Moreira

Prosthetic hands have seen significant improvements in recent years, enabling increasingly more natural interactions between patients with upper limb loss and their environment. Nonetheless, progress is continuously being made to enhance user acceptance, which remains a major drawback in such systems. The efficiency of the actuation mechanism is a critical parameter when designing these devices. Maximising actuation approach efficiency enables the use of smaller and lighter motors, thus decreasing the overall weight of the solution. Simultaneously, increased efficiency contributes to more precise motor control. Within this context, the present work introduces a novel actuation concept. Conventional tendon-pulley mechanisms are often susceptible to tendon slippage; therefore, a hobbed tendon-pulley approach was investigated to maintain cable tension more consistently and efficiently. This approach aims to provide smoother operation, improved reliability, and a reduced risk of mechanical failure due to tendon slippage. Simultaneously, the capability of holding and maintaining a set force is of utmost importance in these systems, and the force-feedback system is usually a major concern. The present work also focuses on comparing current and pressure-based control methodologies for the developed prosthesis. The current-based approach had the significant advantage of not requiring external sensors to be assembled on the prosthesis and not relying on the point of application of force being inside the sensor's active area. During these tests, the prosthesis successfully grasped various objects of different sizes, shapes, stiffnesses, and weights using a current-based approach, without observable tendon slippage.

近年来,假肢有了显著的改进,使上肢丧失患者与环境之间的自然互动越来越多。尽管如此,在提高用户接受度方面仍在不断取得进展,这仍然是此类系统的一个主要缺点。作动机构的效率是设计这些装置时的一个关键参数。最大限度地提高驱动效率可以使用更小、更轻的电机,从而降低解决方案的总重量。同时,提高效率有助于更精确的电机控制。在此背景下,本工作引入了一个新的驱动概念。传统的肌腱-滑轮机构往往容易肌腱滑移;因此,研究了一种滚刀肌腱-滑轮方法,以更一致和有效地保持索张力。这种方法的目的是提供更平稳的操作,提高可靠性,并降低由于肌腱滑移而导致的机械故障的风险。同时,在这些系统中,保持和保持固定力的能力是最重要的,力反馈系统通常是一个主要问题。目前的工作还集中在比较当前和基于压力的控制方法为开发的假体。目前基于该方法的显著优点是不需要在义肢上装配外部传感器,也不依赖于传感器活动区域内的施力点。在这些测试中,使用基于电流的方法,假体成功地抓住了不同大小、形状、刚度和重量的各种物体,没有观察到肌腱滑移。
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引用次数: 0
Engineering the Future of Heart Failure Therapeutics: Integrating 3D Printing, Silicone Molding, and Translational Development for Implantable Cardiac Devices. 工程心力衰竭治疗的未来:整合3D打印,硅胶成型,以及移植心脏装置的转化开发。
IF 3.7 3区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2026-02-08 DOI: 10.3390/bioengineering13020192
Carleigh Eagle, Aarti Desai, Michael Franklin, Robert Pooley, Elizabeth Johnson, Shawn Robinson, Mark Lopez, Rohan Goswami

Three-dimensional (3D) anatomic modeling derived from high-resolution medical imaging, such as computed tomography (CT) and magnetic resonance imaging (MRI), has been increasingly adopted in preclinical testing and device development. This white paper describes a cardiac-specific workflow that integrates 3D printing and silicone molding for support device development and procedural simulation. Patient-derived computed tomography angiography data were segmented using FDA-cleared medical modeling software to isolate the left ventricular anatomy and were further processed in computer-aided design (CAD) to ensure accurate physiological wall thickness and structural fidelity. Material jetting 3D printing was performed on a Stratasys J750 using material distributions designed to mimic the mechanical properties of myocardium, thereby approximating myocardial compliance. In parallel, stereolithography apparatus molds were designed from the left ventricle CAD model to cast transparent, pliable left ventricular models in Sorta-Clear™ 18 silicone. The 3D-printed models preserved intricate morphological detail and were suitable for mechanical manipulation and device deployment studies, whereas silicone models offered tunable mechanical properties, transparency for visualization, and durability for repeated use. Together, these complementary modalities provided rapid manufacturing capability and application-relevant physical representation. Case-specific parameters, strengths, and limitations of both models in enhancing patient care and device testing are highlighted, with relevance to heart failure applications. Current knowledge gaps, workflow and integration challenges, and future opportunities are identified, positioning this work as a reference framework for continued innovation in anatomic modeling. Within the collaborative framework of Mayo Clinic's Anatomic Modeling Unit and Simulation Center, this integrated modeling workflow demonstrates the value of multidisciplinary collaboration between engineers and clinicians. Clinically, these patient-specific left ventricular models may enable pre-procedural device sizing and positioning and may support simulation of mechanical circulatory support (MCS) deployment while identifying possible anatomic constraints prior to intervention. This workflow has direct applicability in advanced heart failure patients undergoing MCS support, such as the Impella axillary MCS device or the durable LVAD, with potential to reduce procedural uncertainty while reducing complications and improving peri-procedural outcomes. Additionally, these models also serve as high-accuracy educational tools, enabling trainees and multidisciplinary care teams to visualize and possibly rehearse procedural steps while gaining hands-on experience in a risk-free environment.

三维(3D)解剖建模来源于高分辨率医学成像,如计算机断层扫描(CT)和磁共振成像(MRI),已越来越多地用于临床前测试和设备开发。本白皮书描述了一个心脏特定的工作流程,集成了3D打印和硅胶成型的支持设备开发和程序模拟。使用fda批准的医学建模软件对患者的ct血管造影数据进行分割,以分离左心室解剖结构,并在计算机辅助设计(CAD)中进一步处理,以确保准确的生理壁厚和结构保真度。材料喷射3D打印在Stratasys J750上进行,使用材料分布来模拟心肌的机械特性,从而近似心肌顺应性。同时,立体光刻设备模具由左心室CAD模型设计,以Sorta-Clear™18硅树脂铸造透明,柔韧的左心室模型。3d打印模型保留了复杂的形态细节,适用于机械操作和设备部署研究,而硅胶模型提供可调的机械性能,透明的可视化和耐用性,可重复使用。总之,这些互补的模式提供了快速制造能力和应用相关的物理表示。强调了两种模型在加强患者护理和设备测试方面的特定病例参数、优势和局限性,并与心力衰竭应用相关。确定了当前的知识差距、工作流程和集成挑战以及未来的机会,将这项工作定位为解剖建模持续创新的参考框架。在梅奥诊所解剖建模单元和仿真中心的协作框架内,这种集成的建模工作流程展示了工程师和临床医生之间多学科协作的价值。在临床上,这些患者特异性左心室模型可以实现手术前装置的大小和定位,并可以支持机械循环支持(MCS)部署的模拟,同时在干预之前识别可能的解剖限制。该工作流程直接适用于接受MCS支持的晚期心力衰竭患者,如Impella腋窝MCS装置或耐用的LVAD,有可能减少手术的不确定性,减少并发症并改善术中预后。此外,这些模型还可以作为高精度的教育工具,使受训者和多学科护理团队能够可视化并可能排练程序步骤,同时在无风险的环境中获得实践经验。
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引用次数: 0
An Integrated Framework for Automated Image Segmentation and Personalized Wall Stress Estimation of Abdominal Aortic Aneurysms. 一种腹主动脉瘤自动图像分割和个性化壁应力估计的集成框架。
IF 3.7 3区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2026-02-07 DOI: 10.3390/bioengineering13020191
Merjulah Roby, Juan C Restrepo, Deepak K Shan, Satish C Muluk, Mark K Eskandari, Vikram S Kashyap, Ender A Finol

Abdominal Aortic Aneurysm (AAA) remains a significant public health challenge, with an 82.1% increase in related fatalities from 1990 to 2019. In the United States alone, AAA complications resulted in an estimated 13,640 deaths between 2018 and 2021. In clinical practice, computed tomography angiography (CTA) is the primary imaging modality for monitoring and pre-surgical planning of AAA patients. CTA provides high-resolution vascular imaging, enabling detailed assessments of aneurysm morphology and informing critical clinical decisions. However, manual segmentation of CTA images is labor-intensive and time consuming, underscoring the need for automated segmentation algorithms, particularly when feature extraction from clinical images can inform treatment decisions. We propose a framework to automatically segment the outer wall of the abdominal aorta from CTA images and estimate AAA wall stress. Our approach employs a patch-based dilated modified U-Net model to accurately delineate the outer wall boundary of AAAs and Nonlinear Elastic Membrane Analysis (NEMA) to estimate their wall stress. We further integrate Non-Uniform Rational B-Splines (NURBS) to refine the segmentation. During prediction, our deep learning architecture requires 17±0.02 milliseconds per frame to generate the final segmented output. The latter is used to provide critical insight into the biomechanical state of stress of an AAA. This modeling strategy merges advanced deep learning architecture, the precision of NURBS, and the advantages of NEMA to deliver a robust and efficient method for computational analysis of AAAs.

腹主动脉瘤(AAA)仍然是一个重大的公共卫生挑战,从1990年到2019年,相关死亡人数增加了82.1%。仅在美国,2018年至2021年期间,AAA并发症就导致了约13640人死亡。在临床实践中,计算机断层血管造影(CTA)是AAA患者监测和术前计划的主要成像方式。CTA提供高分辨率血管成像,能够详细评估动脉瘤形态,为关键的临床决策提供信息。然而,人工分割CTA图像是劳动密集型和耗时的,强调了对自动分割算法的需求,特别是当从临床图像中提取特征可以为治疗决策提供信息时。我们提出了一个从CTA图像中自动分割腹主动脉外壁并估计腹主动脉壁应力的框架。该方法采用基于补丁的扩展修正U-Net模型来精确描绘AAAs的外壁边界,并采用非线性弹性膜分析(NEMA)来估计其壁面应力。我们进一步整合非均匀有理b样条(NURBS)来细化分割。在预测过程中,我们的深度学习架构每帧需要17±0.02毫秒来生成最终的分段输出。后者用于提供对AAA应力生物力学状态的关键洞察。该建模策略融合了先进的深度学习架构、NURBS的精度和NEMA的优势,为AAA的计算分析提供了一种鲁棒且高效的方法。
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引用次数: 0
A Parametric Finite Element Analysis of Chick Embryo Aortic Valve Leaflet Biomechanics. 鸡胚主动脉瓣小叶生物力学参数化有限元分析。
IF 3.7 3区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2026-02-06 DOI: 10.3390/bioengineering13020189
Onur Mutlu, Sandra Rugonyi

The anatomy and mechanical strength of aortic valve leaflets are critical determinants of their biomechanical behavior and long-term structural integrity. The embryonic developmental period, when valves are forming, is critical to establish baseline leaflet properties. However, fetal stages of valve development, when valve leaflets are still forming and remodeling, are not well understood. The goal of this study is to investigate the biomechanical stress and deformation modes of developing valve leaflets during systole, and how leaflet biomechanics are affected by anatomy and material properties. To this end, the study employs a parametric approach to model the leaflet anatomy of an HH40 chick embryo, used here as a model of fetal cardiac development. To perform biomechanical analysis, a pressure profile derived from in ovo Doppler ultrasound measurements was applied, and an Ogden hyperelastic material model was employed following a sensitivity analysis. To determine the effect of valve anatomy on leaflet tissue deformation and stresses, we changed the leaflet midline curve (belly curve) from its native curvature to a linear profile and quantified biomechanical responses. Our analysis revealed a strong decrease in average leaflet effective stress as the belly curvature was shifted towards a linear profile. However, this reduction in average stress was at the expense of a biomechanical trade-off. The shift induced a progressive localization of stress concentration at the leaflet tips and commissures, and a distinct bending deformation mode at the tip under peak load. Our findings demonstrate that while the belly curve of the leaflet modulates tissue stress during valve opening, a low-stress anatomy does not align with hemodynamic performance. This work characterizes competing leaflet biomechanical responses (stress reduction versus failure modes) that shape valve leaflet formation, providing fundamental insights into developmental valve biomechanics.

主动脉瓣小叶的解剖结构和机械强度是其生物力学行为和长期结构完整性的关键决定因素。胚胎发育时期,当瓣膜形成时,是建立基本小叶特性的关键。然而,胎儿瓣膜发育阶段,当瓣膜小叶仍在形成和重塑时,尚不清楚。本研究的目的是研究瓣膜收缩期发育的小叶的生物力学应力和变形模式,以及解剖结构和材料特性如何影响小叶的生物力学。为此,本研究采用参数化方法对HH40鸡胚胎的小叶解剖进行建模,并将其作为胎儿心脏发育的模型。为了进行生物力学分析,采用了卵内多普勒超声测量得出的压力剖面,并在灵敏度分析后采用了Ogden超弹性材料模型。为了确定瓣膜解剖对小叶组织变形和应力的影响,我们将小叶中线曲线(腹部曲线)从其固有的曲率改变为线性曲线,并量化了生物力学响应。我们的分析显示,在平均小叶有效应力的强烈减少,因为腹部弯曲被转移到一个线性轮廓。然而,这种平均压力的降低是以牺牲生物力学为代价的。这种变化导致应力集中在小叶尖端和交界处逐渐局部化,并且在峰值荷载作用下尖端处出现明显的弯曲变形模式。我们的研究结果表明,虽然小叶的腹部曲线在瓣膜打开过程中调节组织应力,但低应力解剖并不符合血流动力学性能。这项工作表征了影响瓣膜小叶形成的相互竞争的小叶生物力学反应(应力减少与失效模式),为发育中的瓣膜生物力学提供了基本的见解。
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引用次数: 0
ICIsc: A Deep Learning Framework for Predicting Immune Checkpoint Inhibitor Response by Integrating scRNA-Seq and Protein Language Models. ICIsc:通过整合scRNA-Seq和蛋白质语言模型预测免疫检查点抑制剂反应的深度学习框架。
IF 3.7 3区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2026-02-06 DOI: 10.3390/bioengineering13020187
Zhenyu Jin, Di Zhang, Luonan Chen

Immune checkpoint inhibitors (ICIs) targeting PD-1/PD-L1 and CTLA-4 are widely used in the treatment of several cancers and have significantly improved survival outcomes in responsive patients. However, a substantial proportion of patients fail to benefit from these therapies, underscoring the urgent need for accurate prediction of ICI response. We propose a deep learning framework, ICIsc, to accurately predict ICI response by integrating single-cell RNA sequencing (scRNA-seq) data with protein large language models. Specifically, patient representations are constructed using transcriptomic profiles and immune-related gene set scores as latent embedding features, while drug representations are derived from amino acid sequences of ICI encoded by the Evolutionary Scale Modeling 2 (ESM2). For bulk data, ICIsc employs a bilinear attention module to fuse patient and drug embeddings for response prediction. For scRNA-seq data, ICIsc infers cell-cell interactions using a single-sample network (SSN) approach and applies GATv2 to model immune microenvironment heterogeneity at the single-cell level. Benchmark evaluations and independent validation demonstrate that ICIsc consistently outperforms baseline models and exhibits robust generalization performance. SHAP-based interpretability analysis further identifies key genes (e.g., GAPDH) associated with immunotherapy response and patient prognosis. Overall, ICIsc provides an accurate and interpretable framework for predicting immunotherapy outcomes and elucidating underlying mechanisms.

靶向PD-1/PD-L1和CTLA-4的免疫检查点抑制剂(ici)广泛用于多种癌症的治疗,并显著改善了应答患者的生存结果。然而,很大一部分患者未能从这些治疗中获益,这强调了准确预测ICI反应的迫切需要。我们提出了一个深度学习框架,ICIsc,通过整合单细胞RNA测序(scRNA-seq)数据和蛋白质大语言模型来准确预测ICI反应。具体来说,患者表征是使用转录组谱和免疫相关基因集评分作为潜在嵌入特征构建的,而药物表征是由进化尺度模型2 (ESM2)编码的ICI氨基酸序列衍生的。对于大量数据,ICIsc采用双线性关注模块融合患者和药物嵌入进行响应预测。对于scRNA-seq数据,ICIsc使用单样本网络(SSN)方法推断细胞-细胞相互作用,并应用GATv2在单细胞水平上模拟免疫微环境异质性。基准评估和独立验证表明,ICIsc始终优于基线模型,并表现出强大的泛化性能。基于shap的可解释性分析进一步确定了与免疫治疗反应和患者预后相关的关键基因(如GAPDH)。总的来说,ICIsc为预测免疫治疗结果和阐明潜在机制提供了一个准确和可解释的框架。
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引用次数: 0
Cascaded Deep Learning-Based Model for Classification and Segmentation of Plaques from Carotid Ultrasound Images. 基于级联深度学习的颈动脉超声图像斑块分类与分割模型。
IF 3.7 3区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2026-02-06 DOI: 10.3390/bioengineering13020190
Bo-Wen Ren, Ran Zhou, Xinyao Cheng, Mingyue Ding, Bernard Chiu

Carotid plaque classification based on ultrasound echogenicity and quantification of plaque burden are crucial in stroke risk assessment. In this work, we propose a framework that leverages the synergy between classification and segmentation by sharing plaque location information to enhance the performance of both tasks. Our cascaded framework integrates a ResNet-based classifier (Masked-ResNet-DS) with MedSAM, a medically adapted version of the Segment Anything Model for joint classification and segmentation of carotid plaques from 2D ultrasound images. Ground truth boundaries are used to guide region-specific feature pooling in the classifier, helping it focus on plaques during training. Since ground truth boundaries are unavailable at inference, we introduce a two-iteration strategy: the first generates a class activation map (CAM), which is then used for focused pooling in the second iteration to predict plaque type. The CAM is also used as a prompt to guide MedSAM for segmentation. To ensure accurate localization, the CAM is supervised during training using a Dice loss against the segmentation ground truth. Masked-ResNet-DS achieves a mean F1-score of 96.7% in plaque classification, at least 3.2% higher than competing methods. Ablation studies confirm that ground truth-based pooling and CAM supervision both improve classification. CAM-guided MedSAM achieves a Dice similarity coefficient (DSC) of 86.6%, outperforming U-Net and nnU-Net by 5.9% and 3.6%, respectively. In addition, CAM prompts improve MedSAM's DSC by 2.2%. By sharing plaque location between classification and segmentation, the proposed method improves both tasks and provides a more accurate tool for stroke risk stratification.

基于超声回声的颈动脉斑块分类和斑块负荷的量化是卒中风险评估的关键。在这项工作中,我们提出了一个框架,通过共享斑块位置信息来利用分类和分割之间的协同作用,以提高这两项任务的性能。我们的级联框架将基于resnet的分类器(mask - resnet - ds)与MedSAM集成在一起,MedSAM是一种医学上改编的Segment Anything模型,用于从2D超声图像中对颈动脉斑块进行联合分类和分割。地面真值边界用于指导分类器中特定区域的特征池化,帮助分类器在训练过程中专注于斑块。由于在推理中无法获得基本真理边界,我们引入了一种双迭代策略:第一次生成一个类激活图(CAM),然后在第二次迭代中用于集中池来预测斑块类型。CAM还用作引导MedSAM进行分割的提示符。为了确保准确的定位,CAM在训练过程中使用骰子损失来监督分割基础真理。mask - resnet - ds在斑块分类方面的平均f1评分为96.7%,比竞争方法至少高出3.2%。消融研究证实,基于地面真相的汇集和CAM监督都能改善分类。cam引导的MedSAM实现了86.6%的Dice相似系数(DSC),分别优于U-Net和nnU-Net 5.9%和3.6%。此外,CAM提示使MedSAM的DSC提高了2.2%。通过在分类和分割之间共享斑块位置,该方法改进了这两项任务,并为卒中风险分层提供了更准确的工具。
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引用次数: 0
A Novel, Low-Cost, 3D-Printed Motorized Injector for Retinal Sheet Transplantation. 一种用于视网膜片移植的新型、低成本、3d打印电动注射器。
IF 3.7 3区 医学 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2026-02-06 DOI: 10.3390/bioengineering13020188
Jerald Lim, Francis Ung, Samir Malhotra, Jacob C Diaz, Austen Hamilton, Clare Chen, William C Tang, Magdalene J Seiler, Andrew W Browne

Retinal transplantation offers promise for restoring vision in advanced retinal degeneration. However, manual delivery of retinal sheets is often hindered by imprecise placement and collateral tissue damage resulting from instrument instability. We introduce a novel, 3D-printed, motorized retinal sheet injector designed to enhance placement accuracy and minimize tissue injury. The motorized injector features an Arduino-controlled foot pedal with three discrete actuator positions ("Min", "Mid", "Max"). When compared via frame-by-frame motion analysis, the motorized system reduced tip variance by approximately threefold over manual methods. In addition, in in vitro gelatin trials, the motorized injector achieved significantly higher placement accuracy versus the manual injector, which suffered from occasional complete misplacements. The novel motorized retinal sheet injector markedly improves stability and placement accuracy relative to manual methods, potentially reducing complications associated with subretinal delivery. Safer subretinal delivery can pave the way for innovative research and advanced treatment for retinal disease.

视网膜移植为晚期视网膜变性患者恢复视力提供了希望。然而,由于放置不精确和仪器不稳定造成的附带组织损伤,人工递送视网膜片常常受到阻碍。我们介绍了一种新型的3d打印电动视网膜片注射器,旨在提高放置精度并最大限度地减少组织损伤。电动喷油器具有arduino控制的脚踏板,具有三个离散的执行器位置(“Min”,“Mid”,“Max”)。当通过逐帧运动分析进行比较时,电动系统比手动方法减少了大约三倍的尖端方差。此外,在体外明胶试验中,与手动注射器相比,电动注射器的放置精度明显更高,手动注射器偶尔会出现完全错位。与手动方法相比,新型电动视网膜片注射器显著提高了稳定性和放置精度,潜在地减少了视网膜下递送相关的并发症。更安全的视网膜下输送可以为视网膜疾病的创新研究和先进治疗铺平道路。
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引用次数: 0
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