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Rapidly decellularized adipose tissue induces soft tissue vascularization in potential anatomical spaces. 快速脱细胞的脂肪组织诱导潜在解剖空间的软组织血管化。
IF 3.4 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-09-29 DOI: 10.1186/s12896-025-01042-9
Marcin Piejko, Alicja Hinz, Paweł Mak, Elwira Ligas, Krzysztof Misztal, Mirosław Janowski, Piotr Wałęga, Justyna Drukała
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引用次数: 0
N-Acetylcysteine as an anti-oxidant and anti-inflammatory agent in decreasing histopathological damages and oxidative stress after mercury exposure in lung tissue of rats. n -乙酰半胱氨酸作为抗氧化和抗炎剂减少汞暴露后大鼠肺组织的病理损伤和氧化应激。
IF 3.4 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-09-29 DOI: 10.1186/s12896-025-01041-w
Kebria Diako, Shadi Rahimi, Seyed Ali Mirbagheri Saghaleksari, Seyed Milad Mousavi Eshkelani, Niloofar Keshavarz Taramsari, Asghar Beigi Harchegani, Zhaleh Mohsenifar, Mahdi Shahriarinour, Najmeh Ranji
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引用次数: 0
Efficient removal of Congo Red Dye using a MgAl-LDH/cuttlebone composite adsorbent. MgAl-LDH/海螵蛸复合吸附剂对刚果红染料的高效去除。
IF 3.4 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-09-26 DOI: 10.1186/s12896-025-01043-8
Ramzi Chalghaf, Saber Boubakri, Zakarya Ahmed, Bilel Hadrich, Abdesslem Ben Haj Amara, Hafsia Ben Rhaiem
{"title":"Efficient removal of Congo Red Dye using a MgAl-LDH/cuttlebone composite adsorbent.","authors":"Ramzi Chalghaf, Saber Boubakri, Zakarya Ahmed, Bilel Hadrich, Abdesslem Ben Haj Amara, Hafsia Ben Rhaiem","doi":"10.1186/s12896-025-01043-8","DOIUrl":"10.1186/s12896-025-01043-8","url":null,"abstract":"","PeriodicalId":8905,"journal":{"name":"BMC Biotechnology","volume":"25 1","pages":"104"},"PeriodicalIF":3.4,"publicationDate":"2025-09-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12465848/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145172891","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Metabolomics-based analysis of the correlation between lipid metabolites and thyroid carcinoma. 基于代谢组学的脂质代谢物与甲状腺癌相关性分析。
IF 3.4 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-09-26 DOI: 10.1186/s12896-025-01045-6
Junyu Liu, Jiajun Huo, Zhi Zhang, Xiongsheng Xiao, Siyi Li, Yongkang Wu, Weijie Chen, Zhuoting Chen, Changwei Zheng, Muge Liu, Baibei Li, Guiping Zhou, Zhibin Huang, Jinquan Li, Bin Liu, Haiqing Luo, Wenyi Qin
{"title":"Metabolomics-based analysis of the correlation between lipid metabolites and thyroid carcinoma.","authors":"Junyu Liu, Jiajun Huo, Zhi Zhang, Xiongsheng Xiao, Siyi Li, Yongkang Wu, Weijie Chen, Zhuoting Chen, Changwei Zheng, Muge Liu, Baibei Li, Guiping Zhou, Zhibin Huang, Jinquan Li, Bin Liu, Haiqing Luo, Wenyi Qin","doi":"10.1186/s12896-025-01045-6","DOIUrl":"10.1186/s12896-025-01045-6","url":null,"abstract":"","PeriodicalId":8905,"journal":{"name":"BMC Biotechnology","volume":"25 1","pages":"107"},"PeriodicalIF":3.4,"publicationDate":"2025-09-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12465152/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145172931","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
In silico screening and in vitro biological evaluation reveal Queuine as a promising MAP4K4 inhibitor for treating pancreatic cancer. 计算机筛选和体外生物学评价表明Queuine是一种治疗胰腺癌的有前途的MAP4K4抑制剂。
IF 3.4 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-09-26 DOI: 10.1186/s12896-025-01033-w
Nigar Kantarci-Carsibasi, Münteha Girgin, Nursah D Fidan, Tugba Bal, Shirin Tarbiat
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引用次数: 0
Evaluation of the pharmacological potential of Ganoderma lucidum against haemorrhagic and anticoagulant activities of Echis ocellatus venom. 灵芝对青鱼毒出血和抗凝血活性的药理潜力评价。
IF 3.4 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-09-26 DOI: 10.1186/s12896-025-01044-7
O O Oyedara, B S Ajisebiola, O E Abioye, O A Fadare, O A Olatunji, F M Adeyemi, M N Enahoro, S F Popoola, O O Oluyide, Z A Adeyemi

Background: Echis ocellatus is a highly venomous snake that can cause serious medical complications due to the presence of toxic proteins in its venom. These proteins, such as echicetin and phospholipase A2 (PLA2), often cause severe pathophysiology in snakebite victims. Ganoderma lucidum is recognised for its pharmacological benefits against various diseases. However, the potential of this fungus as an antivenom has not yet been reported.

Objective: This study investigated the inhibitory effects of G. lucidum on haemorrhagic and anticoagulant activities induced by E. ocellatus venom, and identified its possible bioactive inhibitor compounds using in vitro, in vivo, and in silico methods.

Methods: Ganoderma lucidum was extracted using methanol in a standard procedure, and varying doses (20 and 40 mg) of the extract were tested against the biological activities E. ocellatus venom. Thereafter, the extract of the G. lucidum was subjected to Gas Chromatography-Mass Spectrometry (GC-MS) analysis to identify its bioactive compounds. The identified compounds were docked against the catalytic active sites of echicetin and PLA2 proteins to determine the best inhibitor compound. The Absorption, Distribution, Metabolism, Excretion, and Toxicity (ADMET) properties of compounds were determined using the ADMETlab 2.0 web tool.

Results: The extract caused 62.96 ± 1.03% and 59.25 ± 1.59% venom-induced haemorrhage inhibition at doses of 20 and 40 mg, respectively, while plasma clotting times were shortened to 132 and 163 s at 20 and 40 mg, respectively. The GC-MS identified 29 bioactive compounds from G. lucidum extract, out of which hesperidin had the highest docking scores of - 9.3 kcal/mol and - 9.9 kcal/mol against the catalytic sites of echicetin and PLA2 enzymes, respectively.

Conclusion: The results indicate that G. lucidum has antivenom potential against E. ocellatus venom-induced toxic activities, and identified hesperidin as a promising compound for antivenom exploration against viper envenoming.

背景:Echis ocellatus是一种剧毒的蛇,由于其毒液中含有有毒蛋白质,可引起严重的医学并发症。这些蛋白质,如echicetin和磷脂酶A2 (PLA2),经常在蛇咬伤的受害者中引起严重的病理生理反应。灵芝因其对多种疾病的药理作用而被公认。然而,这种真菌作为抗蛇毒血清的潜力尚未被报道。目的:通过体外、体内、计算机等实验方法,研究灵芝对眼青虫毒液致出血和抗凝血活性的抑制作用,并鉴定其可能的生物活性抑制剂化合物。方法:采用标准工艺提取灵芝,测定不同剂量(20、40 mg)的灵芝提取物对黄颡鱼毒的生物活性。随后,采用气相色谱-质谱联用技术(GC-MS)对灵芝提取物进行生物活性成分鉴定。将鉴定的化合物与echicetin和PLA2蛋白的催化活性位点对接,以确定最佳的抑制剂化合物。利用ADMETlab 2.0网络工具测定化合物的吸收、分布、代谢、排泄和毒性(ADMET)特性。结果:在20和40 mg剂量下,黄芪提取物的毒致出血抑制率分别为62.96±1.03%和59.25±1.59%,在20和40 mg剂量下,血浆凝固时间分别缩短至132和163 s。GC-MS共鉴定出29种活性物质,其中橙皮苷与echicetin和PLA2酶的对接分数最高,分别为- 9.3 kcal/mol和- 9.9 kcal/mol。结论:本研究结果表明,菟丝子具有一定的抗蛇毒活性,橙皮苷是一种很有前途的抗蛇毒活性化合物。
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引用次数: 0
A novel single-vector featuring bidirectional promoters for production of bispecific antibody against rabies virus. 一种具有双向启动子的新型单载体制备抗狂犬病毒双特异性抗体。
IF 3.4 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-09-26 DOI: 10.1186/s12896-025-01036-7
Zhigao Zhang, Jia Li, Guanfeng Lin, Shouchun Cao, Yingsong Wu

Background: The World Health Organization (WHO) recommends combination therapy with two non-overlapping monoclonal antibodies (mAbs) to enhance protection in Rabies post-exposure prophylaxis (PEP). While bispecific antibodies (bsAbs) provide superior protection over monoclonal antibodies (mAbs) by simultaneously targeting two distinct epitopes, their development is hindered by complex and inefficient vector design. In this study, we aimed to develop a novel single-vector expression system to efficiently produce potent anti-rabies virus (RABV) neutralizing bsAbs.

Results: We engineered a minimalistic peaSKYA single-vector featuring bidirectional dual-CMV promoters to enable synchronous co-expression of antibody heavy (HC) and light chains (LC) within a single construct. By eliminating redundant backbone elements, this optimized vector increased the expression-cassette ratio by 17% and improves transfection efficiency by 32% compared to dual-vector systems. The platform demonstrated 2-fold greater yields of bispecific antibodies in HEK293F transient expression, with the tetravalent DVD-Ig format antibody HHDVD showing significantly enhanced neutralization potency versus parental monoclonal antibodies in both pseudovirus-based neutralization assays (PBNA, 2193.19 IU/mg) and rapid fluorescent focus inhibition tests (RFFIT, 1679.52 IU/mg).

Conclusions: We developed peaSKYA single-vector expression system for robust production of bispecific antibodies, with candidate HHDVD exhibiting potential in Rabies PEP. This streamlined vector design approach exhibited remarkable potential in bispecific neutralizing antibody development, offering a transferable platform for other engineered bispecific antibodies.

背景:世界卫生组织(WHO)推荐使用两种不重叠单克隆抗体(mab)联合治疗,以增强狂犬病暴露后预防(PEP)的保护作用。虽然双特异性抗体(bsAbs)通过同时靶向两个不同的表位而比单克隆抗体(mab)提供更好的保护,但它们的发展受到复杂和低效载体设计的阻碍。在这项研究中,我们旨在建立一种新的单载体表达系统,以有效地产生有效的抗狂犬病病毒(RABV)中和bsab。结果:我们设计了一个具有双向双cmv启动子的简约型peaSKYA单载体,使抗体重链(HC)和轻链(LC)在单个构建体中同步共表达。通过消除冗余的骨干元素,与双载体系统相比,该优化载体的表达盒比提高了17%,转染效率提高了32%。该平台在HEK293F瞬时表达中,双特异性抗体的产量提高了2倍,四价DVD-Ig格式抗体HHDVD在基于假病毒的中和试验(PBNA, 2193.19 IU/mg)和快速荧光聚焦抑制试验(RFFIT, 1679.52 IU/mg)中均比亲本单克隆抗体表现出显著增强的中和效力。结论:我们开发了一种能够产生双特异性抗体的单载体表达系统peaSKYA,候选HHDVD在狂犬病PEP中表现出潜力。这种流线型的载体设计方法在双特异性中和抗体的开发中显示出显著的潜力,为其他工程双特异性抗体的开发提供了一个可转移的平台。
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引用次数: 0
Prophylactic role of artemisinin in modulating FGFR3, HRAS, and TP53 to prevent early-stage urothelial carcinoma in BBN-induced mouse models. 在bbn诱导的小鼠模型中,青蒿素在调节FGFR3、HRAS和TP53预防早期尿路上皮癌中的预防作用
IF 3.4 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-09-17 DOI: 10.1186/s12896-025-01039-4
Silvia Botrous, Ayaat Elmaghraby, Samar El Achy, Yehia Mustafa, Salah Abdel-Rahman
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引用次数: 0
Developing a Chitosan/polyvinyl alcohol hydrogel for gastro-retentive release of ranitidine and enhanced anti-ulcerative properties. 壳聚糖/聚乙烯醇水凝胶用于雷尼替丁胃保留释放和增强抗溃疡性能。
IF 3.4 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-09-10 DOI: 10.1186/s12896-025-01040-x
Shimaa A Sadek, Sohair R Fahmy, Sara Bayoumi Ali, Marwa Ahmed Abdelfattah, Ahmed Mostafa Fahmy, Kirolos R Mansour, Haneen Abdullah, Yousef Mohamed, Nada Hazem, Arsany Ehab Fayez, Christine Fouad Nasr, Gana Khaled Desouky, Abdelrahman W Hassan, Khadiga M Gaafar
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引用次数: 0
Biodegradation of patulin in apple juice by phosphoribosyl transferase (URA5): implications for food safety. 磷酸核糖基转移酶(URA5)降解苹果汁中的展霉素:对食品安全的影响。
IF 3.4 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-09-10 DOI: 10.1186/s12896-025-00992-4
Kopano Mapheto, Oluwakamisi Festus Akinmoladun, Tiisetso Colleen Maphaisa, Patrick Berka Njobeh

Patulin (PAT), a mycotoxin produced primarily by Penicillium expansum, poses significant health risks and frequently contaminates apples and apple-derived products, often exceeding permissible safety limits. This study investigated the potential of orotate phosphoribosyl transferase (URA5) to degrade PAT in apple juice under controlled conditions. PAT degradation was assessed at initial concentrations of 100 µg/L and 250 µg/L, with enzymatic treatment using 0.2 mg/mL URA5. Samples were incubated for up to 24 h, and PAT degradation was monitored at time intervals of 3, 6, 9, 12, 18, and 24 h using liquid chromatography-mass spectrometry (LC-MS). The results demonstrated a time-dependent PAT degradation, with significant reductions observed as incubation time increased. After 6 h, PAT concentrations decreased to 57.30 µg/L and 112.69 µg/L for the 100 µg/L and 250 µg/L samples, respectively. At 12 h, PAT levels in the 100 µg/L sample fell just below the permissible limit (50 µg/kg), while substantial degradation was observed in the 250 µg/L sample. By 18 h, PAT concentrations dropped further to 47.22 µg/L and 40.10 µg/L, reaching safe consumption levels. After 24 h, degradation rates reached 96.36% and 98.25%, reducing PAT levels to 30.22 µg/L and 31.48 µg/L, confirming the efficacy of URA5 in detoxifying PAT-contaminated apple juice. The findings highlight the potential application of URA5 as a biocatalyst for PAT detoxification in the fruit juice industry. Compared to existing detoxification methods, enzyme-based degradation presents a promising, environmentally friendly, cost-effective, and non-toxic alternative. Further studies should explore its feasibility in large-scale processing and its interaction with other contaminants in commercial apple juice production.

棒曲霉素(PAT)是一种主要由扩张青霉产生的霉菌毒素,对健康构成重大风险,经常污染苹果和苹果衍生产品,通常超过允许的安全限度。本研究在控制条件下研究了羊角酸磷酸核糖基转移酶(URA5)降解苹果汁中PAT的潜力。在初始浓度为100µg/L和250µg/L时,使用0.2 mg/mL URA5进行酶处理,评估PAT的降解情况。样品孵育长达24小时,使用液相色谱-质谱(LC-MS)在3、6、9、12、18和24小时的时间间隔内监测PAT的降解。结果表明,PAT降解与时间有关,随着孵育时间的增加,显著降低。6 h后,100µg/L和250µg/L样品的PAT浓度分别降至57.30µg/L和112.69µg/L。在12小时,100µg/L样品中的PAT水平刚好低于允许限值(50µg/kg),而在250µg/L样品中观察到大量降解。18 h时,PAT浓度进一步下降至47.22µg/L和40.10µg/L,达到安全消耗水平。24 h后,降解率分别达到96.36%和98.25%,PAT水平分别降至30.22µg/L和31.48µg/L,证实了URA5对PAT污染苹果汁的解毒效果。这一发现突出了URA5作为一种生物催化剂在果汁工业中脱毒的潜在应用。与现有的解毒方法相比,基于酶的降解是一种有前途的、环境友好的、成本效益高的、无毒的替代方法。进一步的研究应探讨大规模加工的可行性及其与商业苹果汁生产中其他污染物的相互作用。
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