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The underdiagnosis of pulmonary tuberculosis in non-TB-designated health facilities in China: a nationwide retrospective study. 中国非结核病指定医疗机构肺结核漏诊率:一项全国性回顾性研究
IF 3 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-12-18 DOI: 10.1186/s12879-025-12103-x
Xiang Li, Xichao Ou, Xiaoqiu Liu, Yuhong Li, Ruida Xing, Caihong Xu, Yanlin Zhao, Xin Du, Tao Li
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引用次数: 0
Dosing and safety of amphotericin B deoxycholate in paediatric American cutaneous leishmaniasis in Peru: a case series. 两性霉素B脱氧胆酸盐在秘鲁治疗美国儿科皮肤利什曼病的剂量和安全性:一个病例系列。
IF 3 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-12-18 DOI: 10.1186/s12879-025-12344-w
Mercedes Sanchez-Diaz, Roger Hernandez, Eduardo Verne, Jaime Gallegos, Benjamin Jordan, Joel Lopez, Elsa Gonzales Lagos, Fiorela Alvarez, Alejandro Llanos-Cuentas

Background: Cutaneous leishmaniasis (CL) is a parasitic disease endemic to the Americas, with a high prevalence in Peru. In resource-limited settings where liposomal amphotericin B is often unavailable, amphotericin B deoxycholate (AmB-d) remains a second-line option. However, data on its safety and effectiveness in children are scarce. This study describes the clinical experience of 20 paediatric patients with CL treated with AmB-d in a referral centre in Peru.

Methods: We conducted a retrospective descriptive study of patients ≤14 years with confirmed localised CL who had failed parental sodium stibogluconate (Sb5+ IM/IV) treatment and received intravenous AmB-d at Hospital Cayetano Heredia (Peru) between January 2000 and December 2007. Patients received daily treatment until all lesions met the early cure criteria, defined as complete reepithelialization at the time of discharge. We collected demographic, clinical, and laboratory data, including the mean daily dose, cumulative dose, and adverse events (AEs).

Results: We included 20 patients with a mean age of 4.9 years (±3.7), and 90% had lesions on the face. Nineteen patients (95%) completed treatment and achieved early clinical cure. Mean cumulative dose was 19.8 mg/kg (±5.7) and mean treatment duration was 28.8 days (±7.1). A total of 63.2% (12/19) of patients achieved clinical cure with a cumulative dose below 20mg/kg, and 84.2% with a dose below 25 mg/kg. Systemic adverse events (AEs), including fever (90%) and anorexia (70%), occurred mainly between the second and third weeks of treatment (83%). Six patients (30%) developed an increase in serum creatinine and nine (45%) developed hypokalemia.

Conclusions: Intravenous amphotericin B deoxycholate (AmB-d) is an effective and well-tolerated second-line treatment for paediatric American CL unresponsive to Sb5+ treatment. Despite the need for high cumulative doses, prolonged treatment durations, and frequent AEs, side effects were mild to moderate, transient, and did not lead to treatment discontinuation.

背景:皮肤利什曼病(CL)是美洲的一种地方性寄生虫病,在秘鲁流行率很高。在资源有限的情况下,脂质体两性霉素B通常无法获得,两性霉素B脱氧胆酸盐(AmB-d)仍然是二线选择。然而,关于其在儿童中的安全性和有效性的数据很少。本研究描述了在秘鲁的一个转诊中心用AmB-d治疗的20例小儿CL患者的临床经验。方法:我们对2000年1月至2007年12月在秘鲁Cayetano Heredia医院接受抗己糖酸钠(Sb5+ IM/IV)治疗失败并接受静脉注射AmB-d治疗的≤14岁确诊的局限性CL患者进行了回顾性描述性研究。患者每天接受治疗,直到所有病变达到早期治愈标准,即出院时完全再上皮化。我们收集了人口统计学、临床和实验室数据,包括平均日剂量、累积剂量和不良事件(ae)。结果:我们纳入了20例患者,平均年龄为4.9岁(±3.7),90%的患者面部有病变。19例患者(95%)完成治疗并获得早期临床治愈。平均累积剂量为19.8 mg/kg(±5.7),平均治疗时间为28.8 d(±7.1)。累计剂量低于20mg/kg的患者临床治愈率为63.2%(12/19),累计剂量低于25mg /kg的患者临床治愈率为84.2%。全身不良事件(ae),包括发热(90%)和厌食(70%),主要发生在治疗的第二和第三周之间(83%)。6名患者(30%)出现血清肌酐升高,9名患者(45%)出现低钾血症。结论:静脉注射两性霉素B去氧胆酸盐(AmB-d)是一种有效且耐受性良好的二线治疗方法,用于对Sb5+治疗无反应的儿科美国CL。尽管需要较高的累积剂量、较长的治疗时间和频繁的不良反应,但副作用是轻度至中度的、短暂的,并且不会导致停止治疗。
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引用次数: 0
Statistical modeling the seroprevalence of hepatitis B among the pregnant women attending specialist hospital, Idah, kogi state, Nigeria. 尼日利亚科吉州伊达专科医院孕妇乙型肝炎血清患病率的统计建模
IF 3 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-12-18 DOI: 10.1186/s12879-025-12309-z
Gabriel Aye, Olatayo Olusegun

Background: Hepatitis B Virus (HBV) remains a significant global public health challenge, particularly among pregnant women due to the risk of vertical transmission. Despite increasing reports of HBV in Nigeria, data specific to Idah, Kogi State, are limited. This study aimed to estimate the prevalence and identify predictors of HBV infection among pregnant women in this setting.

Methods: A crosssectional survey was conducted among 245 pregnant women attending their first antenatal clinic visit at Specialist Hospital, Idah, Kogi State, Nigeria (March-June 2024). HBV infection was defined as HBsAg positivity confirmed by rapid test and ELISA neutralization. Independent variables included age, marital status, educational level, exposure to sharp objects, alcohol use, tribal marks, and multiple sexual partners. Adjusted logistic regression models were fitted using penalized likelihood methods in R (v4.4.2). Model fit was assessed with likelihood ratio and Wald tests, Hosmer-Lemeshow goodnessoffit, calibration slope/intercept, and AUC. Predictive performance was evaluated using confusion matrix metrics with Wilson score confidence intervals. Missing data were addressed using single imputation under a Missing at Random (MAR) assumption.

Results: HBV prevalence was 5.7% (95% CI: 3.2-9.4%). Significant predictors included marital status (OR = 23.66, 95% CI: 1.04-654.93), exposure to sharp objects (OR = 23.88, 95% CI: 1.52-3519.22), tribal marks (OR = 9.29, 95% CI: 1.84-99.56), and multiple sexual partners (OR = 66.79, 95% CI: 4.80-1665.01). The model demonstrated excellent discrimination (AUC = 0.9635) and good calibration (Hosmer-Lemeshow χ2 = 4.29, df = 8, p = 0.83). At the Youden threshold (0.30), sensitivity was 0.9610 (95% CI: 0.93-0.98), specificity 0.6429 (95% CI: 0.39-0.85), PPV 0.9780 (95% CI: 0.95-0.99), NPV 0.5000 (95% CI: 0.27-0.73), F1 score 0.969, and balanced accuracy 0.8019.

Conclusion: HBV infection among pregnant women in Idah was significantly associated with marital status, cultural practices (tribal marks), exposure to sharp objects, and multiple sexual partners. The predictive model demonstrated strong discrimination and calibration, supporting its potential utility for HBV risk stratification in antenatal care. However, modest specificity and NPV highlight the need for cautious interpretation and external validation in larger, multisite cohorts.

背景:乙型肝炎病毒(HBV)仍然是一个重大的全球公共卫生挑战,特别是孕妇由于垂直传播的风险。尽管尼日利亚乙型肝炎病毒的报告越来越多,但科吉州伊达的具体数据有限。本研究旨在估计该地区孕妇中HBV感染的患病率并确定预测因素。方法:对2024年3 - 6月在尼日利亚科吉州伊达专科医院首次产前门诊就诊的245名孕妇进行横断面调查。HBV感染定义为经快速检测和ELISA中和证实HBsAg阳性。独立变量包括年龄、婚姻状况、教育水平、接触尖锐物品、饮酒、部落标记和多个性伴侣。采用R (v4.4.2)中的惩罚似然方法拟合调整后的逻辑回归模型。采用似然比和Wald检验、Hosmer-Lemeshow优度、校准斜率/截距和AUC评估模型拟合。预测性能评估使用混淆矩阵指标与威尔逊评分置信区间。在随机缺失(MAR)假设下,使用单次输入处理缺失数据。结果:HBV患病率为5.7% (95% CI: 3.2-9.4%)。重要的预测因素包括婚姻状况(OR = 23.66, 95% CI: 1.04-654.93)、接触尖锐物品(OR = 23.88, 95% CI: 1.52-3519.22)、部落标记(OR = 9.29, 95% CI: 1.84-99.56)和多个性伴侣(OR = 66.79, 95% CI: 4.80-1665.01)。该模型具有良好的判别性(AUC = 0.9635)和良好的定标性(Hosmer-Lemeshow χ2 = 4.29, df = 8, p = 0.83)。在约登阈值(0.30)下,敏感性为0.9610 (95% CI: 0.93-0.98),特异性为0.6429 (95% CI: 0.39-0.85), PPV为0.9780 (95% CI: 0.95-0.99), NPV为0.5000 (95% CI: 0.27-0.73), F1评分为0.969,平衡准确度为0.8019。结论:伊达省孕妇的HBV感染与婚姻状况、文化习俗(部落印记)、接触尖锐物品和多个性伴侣显著相关。该预测模型显示出很强的辨别和校准能力,支持其在产前保健中HBV风险分层的潜在效用。然而,适度的特异性和NPV强调了在更大的多地点队列中谨慎解释和外部验证的必要性。
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引用次数: 0
Spatiotemporal and clinical dynamics of Crimean-Congo Hemorrhagic Fever in Wasit Governorate, Iraq (2022-2025): a retrospective analytical study. 伊拉克瓦西特省克里米亚-刚果出血热时空和临床动态(2022-2025):一项回顾性分析研究
IF 3 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-12-18 DOI: 10.1186/s12879-025-12418-9
Mohammed A Jalal, Kamil M Halboot, Sundus A Lami, Asaad N Jassim, Luay M Mohammad, Faris Lami

Background: Crimean-Congo Hemorrhagic Fever (CCHF) is a high-fatality, tick-borne viral zoonosis endemic to several regions of the Eastern Mediterranean, including Iraq. This study aimed to characterize the spatiotemporal patterns, clinical spectrum, and exposure-specific risk factors of CCHF in Wasit Governorate, Iraq.

Methods: A retrospective analytical study was conducted using surveillance data from 369 suspected cases reported in Wasit Governorate between 1 January 2022 to 30 June 2025. Laboratory confirmation was based on RT-PCR and serological criteria. Demographic, clinical, hematological, and exposure variables were analyzed using SPSS version 25. Descriptive statistics, Chi-square tests, and binary logistic regression were applied to identify significant predictors. Spatial distribution was visualized using QGIS.

Results: Among 369 suspected cases, 98 (26.6%) were laboratory-confirmed. Confirmed cases peaked in 2023 and exhibited a seasonal distribution between April and September. The case fatality rate was 11.5%, with no deaths in 2024. Clinical predictors of confirmation included injection site bleeding (OR = 4.33), ocular hemorrhage (OR = 3.10), and severe thrombocytopenia (OR = 2.90). Adults aged ≥ 30 years had significantly higher odds of infection. Key risk factors included recent animal slaughter (OR = 3.74), tick bites (OR = 4.85), and handling raw meat (OR = 2.39). Human-to-human transmission was negligible.

Conclusion: CCHF remains a recurrent and seasonally driven public health threat in Wasit, primarily mediated through zoonotic exposures. Hemorrhagic manifestations and thrombocytopenia are critical clinical indicators. These findings underscore the urgent need for integrated One Health surveillance, targeted vector control, and risk communication strategies to mitigate transmission in endemic settings.

Clinical trial: Not applicable.

背景:克里米亚-刚果出血热(CCHF)是一种高致死率的蜱传病毒性人畜共患病,流行于东地中海几个地区,包括伊拉克。本研究旨在描述伊拉克Wasit省CCHF的时空模式、临床谱和暴露特异性危险因素。方法:利用2022年1月1日至2025年6月30日在Wasit省报告的369例疑似病例的监测数据进行回顾性分析研究。实验室确认基于RT-PCR和血清学标准。人口统计学、临床、血液学和暴露变量使用SPSS版本25进行分析。采用描述性统计、卡方检验和二元逻辑回归来确定显著的预测因子。利用QGIS对空间分布进行可视化。结果:369例疑似病例中,实验室确诊98例(26.6%)。确诊病例在2023年达到高峰,并在4月至9月之间呈现季节性分布。病死率为11.5%,2024年无死亡病例。确诊的临床预测因素包括注射部位出血(OR = 4.33)、眼出血(OR = 3.10)和严重血小板减少(OR = 2.90)。年龄≥30岁的成年人感染的几率明显更高。主要危险因素包括近期屠宰动物(OR = 3.74)、蜱叮咬(OR = 4.85)和处理生肉(OR = 2.39)。人与人之间的传播可以忽略不计。结论:在华盛顿州,CCHF仍然是一种周期性和季节性的公共卫生威胁,主要通过人畜共患病暴露介导。出血表现和血小板减少是重要的临床指标。这些发现强调了迫切需要综合的“同一个健康”监测、有针对性的媒介控制和风险沟通战略,以减轻流行环境中的传播。临床试验:不适用。
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引用次数: 0
Neonatal fungemia: a case series highlighting the threat posed by non-albicans Candida (NAC) species and a yeast-like filamentous fungus. 新生儿真菌病:一个病例系列强调非白色念珠菌(NAC)物种和酵母样丝状真菌构成的威胁。
IF 3 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-12-17 DOI: 10.1186/s12879-025-10930-6
Ranu Soni, Ramchandar Jadi, Arun Kumar Sharma, Kawaljit Singh Multani

Introduction: Neonatal fungemia represents a substantial contributor to morbidity and mortality in 25-30% of neonatal intensive care units (NICUs), particularly affecting preterm or low-birth-weight infants. The immune systems of neonates, particularly those who are preterm, are underdeveloped, making them highly susceptible to infections like fungemia.

Cases: In the neonatal intensive care unit (NICU), bloodstream infections (BSIs) were identified in 18 out of 72 cases, accounting for 25% of the total. Of these, five cases were attributed to fungal infections, constituting 27.7% of all infections over the past three months. This report concentrates on these five neonatal cases, which were diagnosed with fungemia, a form of bloodstream infection caused by Candida and yeast-like filamentous fungi, particularly affecting newborns. The non-albicans Candida (NAC) species, specifically Candida tropicalis, Candida krusei, and Candida pelliculosa, as well as the arthroconidial yeast-like filamentous fungus Saprochaete capitata, have been associated with increased morbidity and mortality rates. A significant proportion of these cases were outborn, with potential associations to risk factors such as maternal vaginal candidiasis or lapses in infection control measures during childbirth. All cases were identified within the first week of life and were consequently classified as early-onset neonatal sepsis. In addition to maternal risk factors, several neonates were delivered preterm, exhibited low birth weight, experienced respiratory distress, and required ventilatory support. Unfortunately, only two cases resulted in recovery and discharge, while the remaining three did not survive.

Discussion & conclusions: The prompt identification and management of conditions are essential for optimizing patient outcomes. This study highlights the critical role of non-albicans Candida species and other yeast-like invasive fungi as key factors in the onset of early neonatal sepsis within neonatal intensive care units (NICUs).

新生儿真菌病是25-30%新生儿重症监护病房(NICUs)发病率和死亡率的重要因素,尤其影响早产儿或低出生体重儿。新生儿,特别是早产儿的免疫系统发育不全,这使得他们极易受到真菌病等感染。病例:在新生儿重症监护病房(NICU), 72例病例中有18例发现血流感染(bsi),占总数的25%。其中,5例是真菌感染,占过去3个月所有感染的27.7%。本报告集中讨论这5例被诊断为真菌血症的新生儿病例,这是一种由念珠菌和酵母样丝状真菌引起的血液感染,特别影响新生儿。非白色念珠菌(NAC)种,特别是热带念珠菌、克氏念珠菌和外膜念珠菌,以及关节孢子酵母样丝状真菌,与发病率和死亡率增加有关。这些病例中有很大一部分是先天性的,可能与产妇阴道念珠菌病或分娩期间感染控制措施失误等风险因素有关。所有病例均在出生后第一周内确诊,并被归类为早发性新生儿败血症。除了产妇的危险因素,一些新生儿早产,表现出低出生体重,经历呼吸窘迫,并需要呼吸支持。不幸的是,只有两例康复出院,其余三例死亡。讨论与结论:及时识别和管理病情对于优化患者预后至关重要。本研究强调了非白色念珠菌和其他酵母样侵袭性真菌在新生儿重症监护病房(NICUs)早期新生儿脓毒症发病中的关键作用。
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引用次数: 0
Mycobacterium florentinum pulmonary disease: a case report and review of the literature. 弗洛伦丁分枝杆菌肺病1例报告及文献复习。
IF 3 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-12-17 DOI: 10.1186/s12879-025-12321-3
Fabian Leo, Silke Polsfuss, Anne-Sophie Przewosnik, Christian Grohé, Christoph Lange

Background: Following the initial description of Mycobacterium florentinum in 2005, very few clinical cases have been reported and the optimal antimicrobial treatment and clinical outcomes are uncertain. Amikacin liposome inhalation suspension (ALIS) has received approval for the treatment of Mycobacterium avium/intracellulare complex (MAC) pulmonary disease. However, there is little experience with its use for infections caused by less common nontuberculous mycobacteria (NTM). Moreover, the awareness of uncommon adverse effects is still limited.

Case presentation: A 69-year-old female patient suffering from nodular bronchiectatic Mycobacterium florentinum pulmonary disease was treated with azithromycin, ethambutol, and rifampicin, administered three times per week. After 13 months, owing to treatment failure, the therapy was changed to ALIS, moxifloxacin, and clofazimine. This resulted in rapid and sustained culture conversion. Concurrently, the patient exhibited increased cough and sputum, which was consistent with a clinical diagnosis of aspergillosis, as confirmed by evidence of Aspergillus fumigatus in respiratory specimens and a significant increase in serum Aspergillus IgG antibody levels. Following a six-month course of antifungal therapy, a marked improvement in the patient's symptoms was observed.

Conclusions: As with MAC pulmonary disease, combination antimicrobial therapy including ALIS was successful in a patient affected by a difficult-to-treat pulmonary infection caused by Mycobacterium florentinum, a rare NTM pathogen. Combination antibiotic treatment including ALIS may also be considered for other difficult-to-treat, non-MAC NTM- pulmonary diseases. During treatment, patients should be monitored for the emergence of Aspergillus co-infection.

背景:自2005年对弗洛伦丁分枝杆菌的首次描述以来,很少有临床病例报道,最佳抗菌治疗和临床结果尚不确定。阿米卡星脂质体吸入混悬液(ALIS)已获批用于治疗鸟分枝杆菌/细胞内复合体(MAC)肺部疾病。然而,很少有经验将其用于由较不常见的非结核分枝杆菌(NTM)引起的感染。此外,对罕见不良反应的认识仍然有限。病例介绍:一位患有结节性支气管扩张型弗洛伦丁分枝杆菌肺病的69岁女性患者接受阿奇霉素、乙胺丁醇和利福平治疗,每周给药3次。13个月后,因治疗失败,改为爱力司、莫西沙星、氯法齐明治疗。这导致了快速和持续的文化转换。同时,患者咳嗽和痰量增加,呼吸道标本中发现烟曲霉,血清曲霉IgG抗体水平明显升高,这与曲霉病的临床诊断一致。经过六个月的抗真菌治疗后,观察到患者症状有明显改善。结论:与MAC肺部疾病一样,对于一名由罕见的NTM病原体弗洛伦蒂诺分枝杆菌引起的难以治疗的肺部感染患者,包括ALIS在内的联合抗菌治疗是成功的。包括ALIS在内的联合抗生素治疗也可以考虑用于其他难以治疗的非mac NTM-肺部疾病。在治疗过程中,应监测患者是否出现曲霉合并感染。
{"title":"Mycobacterium florentinum pulmonary disease: a case report and review of the literature.","authors":"Fabian Leo, Silke Polsfuss, Anne-Sophie Przewosnik, Christian Grohé, Christoph Lange","doi":"10.1186/s12879-025-12321-3","DOIUrl":"https://doi.org/10.1186/s12879-025-12321-3","url":null,"abstract":"<p><strong>Background: </strong>Following the initial description of Mycobacterium florentinum in 2005, very few clinical cases have been reported and the optimal antimicrobial treatment and clinical outcomes are uncertain. Amikacin liposome inhalation suspension (ALIS) has received approval for the treatment of Mycobacterium avium/intracellulare complex (MAC) pulmonary disease. However, there is little experience with its use for infections caused by less common nontuberculous mycobacteria (NTM). Moreover, the awareness of uncommon adverse effects is still limited.</p><p><strong>Case presentation: </strong>A 69-year-old female patient suffering from nodular bronchiectatic Mycobacterium florentinum pulmonary disease was treated with azithromycin, ethambutol, and rifampicin, administered three times per week. After 13 months, owing to treatment failure, the therapy was changed to ALIS, moxifloxacin, and clofazimine. This resulted in rapid and sustained culture conversion. Concurrently, the patient exhibited increased cough and sputum, which was consistent with a clinical diagnosis of aspergillosis, as confirmed by evidence of Aspergillus fumigatus in respiratory specimens and a significant increase in serum Aspergillus IgG antibody levels. Following a six-month course of antifungal therapy, a marked improvement in the patient's symptoms was observed.</p><p><strong>Conclusions: </strong>As with MAC pulmonary disease, combination antimicrobial therapy including ALIS was successful in a patient affected by a difficult-to-treat pulmonary infection caused by Mycobacterium florentinum, a rare NTM pathogen. Combination antibiotic treatment including ALIS may also be considered for other difficult-to-treat, non-MAC NTM- pulmonary diseases. During treatment, patients should be monitored for the emergence of Aspergillus co-infection.</p>","PeriodicalId":8981,"journal":{"name":"BMC Infectious Diseases","volume":" ","pages":""},"PeriodicalIF":3.0,"publicationDate":"2025-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145773072","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The multipathogen profiles and co-infection characteristics obtained from comprehensive surveillance of patients with acute respiratory infections in the post-COVID-19 era in Shenzhen, China. 后新冠肺炎时代深圳市急性呼吸道感染患者综合监测多病原体特征及合并感染特征
IF 3 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-12-17 DOI: 10.1186/s12879-025-12350-y
Dandan Niu, Qiuying Lv, Yuan Bai, Zhen Zhang, Renli Zhang, Yanxiao Gao, Zhongyao Xu, Honglin Wang, Xiaomin Zhang, Feng Sha, Yingluan Zhang, Tong Li, Tengyingzi Liu, Dan Wang, Xiaolu Shi, Yongchao Guo, Jinling Tang, Tiejian Feng

Background: The long-term impact of the COVID-19 pandemic on the distribution pattern of respiratory pathogens in China was unknown. Our study aimed to determine the multipathogen profiles and co-infection characteristics among patients with acute respiratory infections (ARIs) in the post-COVID-19 era in Shenzhen, China.

Methods: This multi-center cross-sectional study was conducted among patients with ARIs from five sentinel hospitals from November 1, 2022 to June 30, 2023 in Shenzhen, China. The collected respiratory samples were subjected to targeted next-generation sequencing for high-throughput screening of 108 respiratory pathogens. Multi-stage logistic regression models were built to infer interactions between pathogens at the individual level.

Results: The median [IQR] age of 1890 patients included was 31.8 [23.7, 45.2] years. The proportions of positivity on any pathogen and co-infection were 84.0% (1587/1890) and 41.4% (782/1890). Children < 5 years and school-age children have the highest viral (78.0%, 99/127) and bacterial positive proportion (65.5%, 114/127). Influenza virus (IFV), SARS-CoV-2, and human rhinovirus (HRV) were the three leading viral pathogens, and Haemophilus influenzae (H. influenzae), Staphylococcus aureus (S. aureus), and Streptococcus pneumoniae (S. pneumoniae) were the three leading bacterial pathogens. The three leading co-infection pathogens were S. pneumoniae combined with H. influenzae (4.6%, 86/1890), IFV with S. aureus (4.5%, 85/1890) and with H. influenzae (3.3%, 62/1890). The proportions of positivity on IFV, enterovirus, SARS-CoV-2, H. influenzae, S. aureus, and S. pneumoniae in outpatients were higher than those in inpatients, while the proportions of positivity on human parainfluenza virus (HPIV), human metapneumovirus (HMPV), Pseudomonas aeruginosa, Acinetobacter baumannii, Mycoplasma pneumoniae, and Legionella pneumophila in inpatients were higher than those in outpatients. RSV, IFV, HPIV, human adenovirus, and HRV were the top five viral pathogens among hospitalized children before, during, and after the COVID-19 pandemic in Shenzhen. Virus‒virus interactions, such as IFV combined with SARS-CoV-2 (OR = 20.3 [95% confidence interval (CI): 7.2-57.0]) and with HRV (OR = 7.2 [95% CI: 3.5-15.0]) exhibited competitive effects. Bacteria-bacteria interactions exhibited synergistic effects such as Moraxella catarrhalis combined with S. pneumoniae (OR = 0.3 [95% CI: 0.2-0.5]).

Conclusions: There were differences in the pathogen profiles among patients with different ages, pneumonia groups, and case types. Virus‒virus interactions presented competitive effects, while bacterium‒bacterium interactions exhibited synergistic effects.

背景:COVID-19大流行对中国呼吸道病原体分布格局的长期影响尚不清楚。我们的研究旨在确定中国深圳后covid -19时代急性呼吸道感染(ARIs)患者的多病原体特征和合并感染特征。方法:对中国深圳5家哨点医院2022年11月1日至2023年6月30日的ARIs患者进行多中心横断面研究。收集的呼吸道样本进行靶向新一代测序,高通量筛选108种呼吸道病原体。建立了多阶段逻辑回归模型来推断病原体在个体水平上的相互作用。结果:纳入的1890例患者的中位[IQR]年龄为31.8[23.7,45.2]岁。1种病原菌和合并感染阳性率分别为84.0%(1587/1890)和41.4%(782/1890)。结论:不同年龄、不同肺炎组、不同病例类型的患者病原菌谱存在差异。病毒与病毒的相互作用表现为竞争效应,而细菌与细菌的相互作用表现为协同效应。
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引用次数: 0
Antimicrobial susceptibility patterns and associated risk factors of bacterial isolate among urinary tract infection suspected patients at University of Gondar Comprehensive Specialized Hospital North west Ethiopia. 埃塞俄比亚西北部贡达尔大学综合专科医院尿路感染疑似患者细菌分离物的抗菌药物敏感性及相关危险因素
IF 3 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-12-17 DOI: 10.1186/s12879-025-12125-5
Kumlgn Tesfa, Debaka Belete, Meseret Mulu, Aschalew Gelaw
<p><strong>Background: </strong>Urinary tract infections (UTIs) are the most common infections affecting millions of people worldwide. There is a shortage of comprehensive data addressing the current prevalence, antimicrobial susceptibility pattern, and associated risk factors in clinically suspected UTI patients.</p><p><strong>Objective: </strong>To assess the prevalence, bacterial profile, antimicrobial susceptibility pattern and associated risk factors for urinary tract infection among clinically suspected patients.</p><p><strong>Method: </strong>A hospital-based cross-sectional study was conducted from May 1, 2023, to November 30, 2023, in patients clinically suspected of having a UTI. Sociodemographic and clinical data were collected using structured questionnaires. A total of 320 patients were enrolled, and a systematic random sampling technique was used to select the studyparticipantsApproximately 5 to 10 ml of morning midstream urine was collected and inoculated primarily on the CLED agar. Thereafter, the isolates were subculture on Blood agar and MacConkey media for identification. The Kirby-Bauer disc diffusion method was used to determine the antibiotic susceptibility pattern of the isolates. Extended-spectrum beta-lactamase and carbapenemase-producing strains were detected using combined disk and modified carbapenem inhibition test methods, respectively. The data were entered and analyzed using SPSS version 27 software. A p value < 0.05 was considered to indicate statistical significance.</p><p><strong>Results: </strong>Of the total participants, 212 (66.25%) were females. The mean age of the participants was 35.99 ± 17.17 years. The prevalence of UTIs was 21.9%. A total of 70 different bacterial isolates were recovered. Of these, 58 (82.9%) and 12 (17.1%) were gram-negative and gram-positive bacterial isolates, respectively. Among the gram-negative bacteria,E.coli isoltes was 34 (58.6%) predominant, followed by K. pneumoniae 22 (37.9%) and P. mirabilis 2 (3.5%), while S. aureus 9 (75%) was prevalent among the gram-positive isolates. Meropenem and nitrofurantoin are effective antibiotics against gram-negative bacteria.The prevalence of multidrug resistance was 71.4%. Approximately 27 (46.6%) and 4 (6.9%) gram-negative isolates were found to be extended-spectrum beta-lactamases and carbapenemase producers, respectively. A history of UTI, catheterization, HIV, and diabetes were independent risk factors associated with UTI (p < 0.05).</p><p><strong>Conclusion: </strong>The prevalence of UTIs among clinically suspected patients was high, with increased positivity rates for MDR, ESBL and CP-producing strains. Patients with UTI should have a critical need for appropriate antimicrobial administration and the practice of providing patients with suitable antibioticsAntibiotic should be prescribed based on results obtained from the laboratory diagnosis of AST and complying with local guidelines by considering the most often domestically isolate
背景:尿路感染(uti)是影响全世界数百万人的最常见感染。临床疑似尿路感染患者目前的患病率、抗菌药物敏感性模式和相关危险因素缺乏全面的数据。目的:了解临床疑似尿路感染患者尿路感染的患病率、细菌分布、抗菌药物敏感性及相关危险因素。方法:于2023年5月1日至2023年11月30日对临床怀疑患有尿路感染的患者进行以医院为基础的横断面研究。采用结构化问卷收集社会人口学和临床数据。共纳入320例患者,采用系统随机抽样技术选择研究参与者。收集约5 - 10ml晨尿,主要接种于cle琼脂上。然后,将分离物在Blood agar和MacConkey培养基上传代培养进行鉴定。采用Kirby-Bauer圆盘扩散法测定菌株的药敏谱。采用联合圆盘法和改良碳青霉烯烯抑制法分别检测广谱β -内酰胺酶和产碳青霉烯酶菌株。采用SPSS 27版软件进行数据录入和分析。结果:女性212人(66.25%)。参与者平均年龄为35.99±17.17岁。尿路感染的患病率为21.9%。共分离出70种不同的细菌。其中革兰氏阴性菌58株(82.9%),革兰氏阳性菌12株(17.1%)。在革兰氏阴性菌中,E。革兰氏阳性分离株以大肠杆菌34株(58.6%)为主,其次为肺炎克雷伯菌22株(37.9%)和神奇假单胞菌2株(3.5%),金黄色葡萄球菌9株(75%)为主。美罗培南和呋喃妥因是抗革兰氏阴性菌的有效抗生素。耐多药率为71.4%。分别有27株(46.6%)和4株(6.9%)革兰氏阴性菌株产生广谱β -内酰胺酶和碳青霉烯酶。尿路感染史、导尿、HIV和糖尿病是尿路感染的独立危险因素(p)结论:临床疑似患者尿路感染患病率高,MDR、ESBL和cp产菌阳性率增高。尿路感染患者应该迫切需要适当的抗菌药物管理,并为患者提供合适的抗生素。抗生素的处方应基于AST的实验室诊断结果,并考虑到最常见的国内分离微生物,遵守当地指南。
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引用次数: 0
Gene signatures and networks: linking COVID-19 to liver cirrhosis and hepatocellular carcinoma. 基因特征和网络:将COVID-19与肝硬化和肝细胞癌联系起来。
IF 3 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-12-17 DOI: 10.1186/s12879-025-11916-0
Ning Wang, Xue Wang, Xue Zhou, Guoyue Yang, Qing Ye
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引用次数: 0
Natural history parameters for enteric pathogens to inform modeling studies of diarrhea among children in low-resource settings: results from the MAL-ED longitudinal birth cohort. 肠道病原体的自然历史参数为低资源环境下儿童腹泻的建模研究提供信息:来自MAL-ED纵向出生队列的结果。
IF 3 3区 医学 Q2 INFECTIOUS DISEASES Pub Date : 2025-12-17 DOI: 10.1186/s12879-025-12265-8
Avnika B Amin, Maria Garcia Quesada, Jie Liu, Ritesh Sivakumar, Shane Conyers, Benjamin A Lopman, Eric Houpt, James A Platts-Mills, Elizabeth Rogawski McQuade

Background: Policy decisions may rely on mathematical modelling to predict intervention impacts. Information for key model parameters is limited for most enteric pathogens. To support informed modeling, we aimed to characterize incidence, severity, and duration for ten enteric pathogens - adenovirus 40/41, astrovirus, Campylobacter jejuni and C. coli, Cryptosporidium, norovirus GII, rotavirus, sapovirus, Shigella, heat-stable enterotoxin-producing enterotoxigenic Escherichia coli (ST-ETEC), and typical enteropathogenic E. coli (tEPEC) - among children aged 2 years or younger in South America, southeast Asia, and sub-Saharan Africa.

Methods: We analyzed stool specimens from MAL-ED, a multisite longitudinal birth cohort with active surveillance of children in South America, southeast Asia, and sub-Saharan Africa. We defined unique infections using longitudinal test results, attributed etiologies to diarrheal episodes, calculated infection rates and disease progression probabilities, and characterized age-based trends.

Results: Most pathogens had peak infection rates around 7 to 9 months of age, with incidence gradually decreasing in the second year of life. In contrast, Cryptosporidium and ST-ETEC incidence plateaued after 9 months of age instead of declining. Shigella incidence continually increased in the first two years of life. The likelihood of developing diarrhea decreased with age for adenovirus 40/41, Campylobacter jejuni and C. coli, and tEPEC. The likelihood of attributable diarrhea becoming severe decreased with age.

Conclusions: The age at peak infection burden and peak disease burden were not necessarily the same for a given pathogen. Each pathogen evaluated had its own distinct age trends. These results could support informed modelling of impacts of interventions for specific enteric pathogens, particularly in low-resource settings.

Clinical trial number: Not applicable.

背景:政策决定可能依赖于数学模型来预测干预的影响。对于大多数肠道病原体,关键模型参数的信息是有限的。为了支持信息建模,我们的目的是表征10种肠道病原体的发病率、严重程度和持续时间,包括腺病毒40/41、星状病毒、空肠弯曲杆菌和大肠杆菌、隐孢子虫、诺如病毒GII、轮状病毒、萨波病毒、志氏菌、热稳定产肠毒素产肠毒素大肠杆菌(ST-ETEC)和典型的肠致病性大肠杆菌(tEPEC),这些肠道病原体在南美洲、东南亚和撒哈拉以南非洲的2岁或以下儿童中。方法:我们分析了来自MAL-ED的粪便标本,MAL-ED是一项多地点纵向出生队列研究,对南美、东南亚和撒哈拉以南非洲的儿童进行了积极监测。我们使用纵向测试结果定义独特感染,将病因归因于腹泻发作,计算感染率和疾病进展概率,并描述基于年龄的趋势。结果:多数病原菌感染率在7 ~ 9月龄时达到高峰,在出生后第二年发病率逐渐下降。相比之下,隐孢子虫和ST-ETEC的发病率在9月龄后趋于平稳,而不是下降。志贺氏菌的发病率在生命的头两年持续增加。腺病毒40/41、空肠弯曲杆菌、大肠杆菌和tEPEC发生腹泻的可能性随着年龄的增长而降低。随着年龄的增长,导致严重腹泻的可能性降低。结论:感染负担高峰年龄和疾病负担高峰年龄对同一病原体并不一定相同。每一种被评估的病原体都有自己独特的年龄趋势。这些结果可以支持对干预措施对特定肠道病原体影响的知情建模,特别是在资源匮乏的环境中。临床试验号:不适用。
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BMC Infectious Diseases
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