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Protein glycation and drought response of pea (Pisum sativum L.) root nodule proteome: a proteomics approach 豌豆(Pisum sativum L.)根瘤蛋白质组学的蛋白质糖化和干旱响应
Q3 Agricultural and Biological Sciences Pub Date : 2021-11-12 DOI: 10.21638/spbu03.2021.303
Julia Shumilina, D. Gorbach, Veronika Popova, A. Tsarev, Alena Kuznetsova, Maria Grashina, M. Dorn, E. Lukasheva, N. Osmolovskaya, E. Romanovskaya, V. Zhukov, C. Ihling, T. Grishina, T. Bilova, A. Frolov
Because of ongoing climate change, drought is becoming the major factor limiting productivity of all plants, including legumes. As these protein-rich crops form symbiotic associations with rhizobial bacteria — root nodules — they readily lose their productivity under drought conditions. Understanding the underlying molecular mechanisms might give access to new strategies to preserve the productivity of legume crops under dehydration. As was shown recently, development of drought response is accompanied by alterations in the patterns of protein glycation and formation of advanced glycation end products (AGEs) that might be a part of unknown regulatory mechanisms. Therefore, here we address the effects of moderate drought on protein dynamics and AGE patterns in pea (Pisum sativum) root nodules. For this, plants inoculated with rhizobial culture were subjected to osmotic stress for one week, harvested, the total protein fraction was isolated from root nodules by phenol extraction, analyzed by bottom-up LC-MS-based proteomics, and AGE patterns were characterized. Surprisingly, despite the clear drought-related changes in phenotype and stomatal conductivity, only minimal accompanying expressional changes (14 rhizobial and 14 pea proteins, mostly involved in central metabolism and nitrogen fixation) could be observed. However, 71 pea and 97 rhizobial proteins (mostly transcription factors, ABC transporters and effector enzymes) were glycated, with carboxymethylation being the major modification type. Thereby, the numbers of glycated sites in nodule proteins dramatically decreased upon stress application. It might indicate an impact of glycation in regulation of transport, protein degradation, central, lipid and nitrogen metabolism. The data are available at Proteome Xchange (accession: PXD024042).
由于持续的气候变化,干旱正在成为限制包括豆科植物在内的所有植物生产力的主要因素。由于这些富含蛋白质的作物与根瘤菌(根瘤)形成共生关系,它们在干旱条件下很容易失去生产力。了解潜在的分子机制可能为在脱水条件下保持豆科作物的生产力提供新的策略。正如最近所显示的,干旱反应的发展伴随着蛋白质糖基化模式的改变和晚期糖基化终产物(AGEs)的形成,这可能是未知调节机制的一部分。因此,本文研究了中度干旱对豌豆根瘤蛋白质动态和AGE模式的影响。为此,对接种根瘤菌培养的植株进行渗透胁迫1周后收获,采用苯酚提取法从根瘤中分离总蛋白组分,采用自下而上LC-MS-based蛋白质组学方法进行分析,并对AGE模式进行表征。令人惊讶的是,尽管表型和气孔导电性发生了明显的干旱相关变化,但伴随的表达变化(14种根瘤菌和14种豌豆蛋白,主要参与中枢代谢和固氮)却微乎其微。然而,71个豌豆蛋白和97个根瘤菌蛋白(主要是转录因子、ABC转运蛋白和效应酶)被糖基化,羧甲基化是主要的修饰类型。因此,在胁迫作用下,结节蛋白中糖化位点的数量急剧减少。这可能表明糖基化对转运、蛋白质降解、中枢、脂质和氮代谢的调节有影响。数据可在Proteome exchange (accession: PXD024042)上获得。
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引用次数: 3
Diet affects body color and energy metabolism in the Baikal endemic amphipod Eulimnogammarus cyaneus maintained in laboratory conditions 在实验室条件下,饮食会影响贝加尔湖特有的片足类动物蓝藻的身体颜色和能量代谢
Q3 Agricultural and Biological Sciences Pub Date : 2021-11-12 DOI: 10.21638/spbu03.2021.306
A. Saranchina, P. Drozdova, A. Mutin, M. Timofeyev
Proper diet is critical for laboratory-reared animals, as it may affect not only their welfare, but also experimental results. Amphipods (Crustacea: Amphipoda) play important roles in ecosystems and are often used in environmental research. Endemic amphipods from the ancient Lake Baikal are promising for laboratory bioassays; however, there are currently no laboratory cultures. In this work, we determine how different diets affect the color and metabolism of a laboratory-reared Baikal amphipod, Eulimnogammarus cyaneus. We found that in freshly collected blue-colored animals, body color correlated with total carotenoid content. Total carotenoid levels did not differ after long-term (two months) feeding with a close to natural carotenoid-enriched, or even a carotenoid-depleted diet. Nevertheless, antennae color was closer to red in the natural-like diet group. It is likely that the carotenoids from the commercial diet are not properly metabolized in E. cyaneus. The animals fed commercial diets had a higher glycogen content, which may signify a higher metabolic rate. Overall, we show that a carotenoid-enriched diet optimized for decapods is not optimal for amphipods, likely due to different carotenoid compositions, and the diet for long-term rearing of E. cyaneus and other Baikal amphipods requires supplementation.
适当的饮食对实验室饲养的动物至关重要,因为它不仅会影响它们的福利,而且会影响实验结果。片脚类动物在生态系统中扮演着重要的角色,经常被用于环境研究。古贝加尔湖特有的片脚类动物很有希望用于实验室生物分析;然而,目前还没有实验室培养。在这项工作中,我们确定了不同的饮食如何影响实验室饲养的贝加尔湖片脚动物Eulimnogammarus cyaneus的颜色和代谢。我们发现在新鲜采集的蓝色动物中,身体颜色与总类胡萝卜素含量相关。总类胡萝卜素水平在长期(两个月)喂食接近天然类胡萝卜素丰富的食物或甚至是缺乏类胡萝卜素的饮食后没有差异。然而,食用天然食物组的触角颜色更接近红色。这很可能是来自商业饮食的类胡萝卜素在蓝藻中没有得到适当的代谢。饲喂商业饲料的动物糖原含量更高,这可能意味着更高的代谢率。总的来说,我们发现适合十足类动物的富含类胡萝卜素的饮食并不适合片脚类动物,可能是由于类胡萝卜素成分不同,而且长期饲养蓝螯虾和其他贝加尔湖片脚类动物的饮食需要补充。
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引用次数: 1
A biomechanical model to assess the injury risk of leopards (Panthera pardus) hunting by free falling from trees 用生物力学模型评估豹(Panthera pardus)从树上自由落体狩猎的伤害风险
Q3 Agricultural and Biological Sciences Pub Date : 2021-11-12 DOI: 10.21638/spbu03.2021.305
R. E. Blanco, Daniel Eduardo Luzardo-Vera
Leopards have been observed to ambush prey by jumping down on it from trees. There are both anecdotal reports and video recordings of this hunting behavior. Here we conducted a biomechanical analysis of this technique to assess the degree of risk for the predator in such cases. We concluded that the risk of suffering severe injuries seems to be too high for this technique to be a usual way of predation on horned mammals such as male impalas. Our results can be useful in discussing proposed paleobiological hunting scenarios and living predators’ strategies of managing risks.
人们观察到豹子会从树上跳下来伏击猎物。关于这种狩猎行为,既有传闻报道,也有录像记录。在这里,我们对这项技术进行了生物力学分析,以评估这种情况下捕食者的风险程度。我们得出的结论是,遭受严重伤害的风险似乎太高,这项技术不可能成为捕食雄性黑斑羚等有角哺乳动物的常见方式。我们的研究结果有助于讨论拟议的古生物狩猎场景和活体捕食者的风险管理策略。
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引用次数: 0
Species- and age-dependent distribution of retinol and α-tocopherol in the Canidae family during the cold season 寒冷季节犬科视黄醇和α-生育酚的物种和年龄依赖性分布
Q3 Agricultural and Biological Sciences Pub Date : 2021-11-12 DOI: 10.21638/spbu03.2021.304
I. Baishnikova, T. Ilyina, V. Ilyukha, K. Tirronen
Vitamins A and E are known as nutrients involved in metabolic processes and facilitating the adaptation of animals. The metabolism of these vitamins is closely related to lipid metabolism, which has seasonal variations in animals inhabiting northern latitudes. The aim of this study was to investigate the concentrations of retinol (vitamin A) and α-tocopherol (vitamin E) in the cold season (October to February) in tissues of Canidae species that have different ecological characteristics: the blue fox (Vulpes syn. Alopex lagopus), silver fox (Vulpes vulpes), their interspecific hybrids (Vulpes×Vulpes), raccoon dog (Nyctereutes procyonoides), and grey wolf (Canis lupus). In addition, age-related differences in the levels of these vitamins were determined. Results showed the distribution of retinol and α-tocopherol in the body of the canids was similar, with larger amounts being found in the liver and kidney cortex, which play a regulatory role in the metabolism of these nutrients. The higher retinol level in the liver of wolves and interspecific hybrids of blue fox and silver fox, as compared to the retinol level in the liver of other species, might be species-specific and could also be attributed to dietary differences. The blue fox and raccoon dog both have a higher capacity for α-tocopherol accumulation in the cold season, apparently due to their ability to store substantial fat reserves. Retinol and α-tocopherol levels were generally higher in the tissues of mature animals.
众所周知,维生素A和E是参与代谢过程并促进动物适应的营养素。这些维生素的代谢与脂质代谢密切相关,脂质代谢在居住在北纬地区的动物中具有季节性变化。本研究的目的是研究具有不同生态特征的犬科物种在寒冷季节(十月至二月)的组织中视黄醇(维生素A)和α-生育酚(维生素E)的浓度:蓝狐(Vulpes syn.Alopex lagopus)、银狐(Vurpes Vulpes)、,和灰狼(犬狼疮)。此外,还测定了这些维生素水平与年龄相关的差异。结果显示,视黄醇和α-生育酚在犬科动物体内的分布相似,在肝脏和肾脏皮层中发现了大量的视黄醇,它们在这些营养物质的代谢中起着调节作用。与其他物种肝脏中的视黄醇水平相比,狼和蓝狐和银狐的种间杂交种肝脏中的视黄醇水平较高,这可能是物种特异性的,也可能归因于饮食差异。蓝狐和貉在寒冷季节都有更高的α-生育酚积累能力,这显然是因为它们能够储存大量的脂肪储备。成熟动物组织中的视黄醇和α-生育酚水平通常较高。
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引用次数: 1
Legume tasters: symbiotic rhizobia host preference and smart inoculant formulations 豆类品尝者:共生根瘤菌宿主偏好和智能接种剂配方
Q3 Agricultural and Biological Sciences Pub Date : 2021-03-31 DOI: 10.21638/SPBU03.2021.106
L. Cangioli, A. Checcucci, A. Mengoni, C. Fagorzi
Mutualistic interactions have great importance in ecology, with genetic information that takes shape through interactions within the symbiotic partners and between the partners and the environment. It is known that variation of the host-associated microbiome contributes to buffer adaptation challenges of the host’s physiology when facing varying environmental conditions. In agriculture, pivotal examples are symbiotic nitrogen-fixing rhizobia, known to contribute greatly to host (legume plants) adaptation and host productivity. A holistic view of increasing crop yield and resistance to biotic and abiotic stresses is that of microbiome engineering, the exploitation of a host-associated microbiome through its rationally designed manipulation with synthetic microbial communities. However, several studies highlighted that the expression of the desired phenotype in the host resides in species-specific, even genotype-specific interactions between the symbiotic partners. Consequently, there is a need to dissect such an intimate level of interaction, aiming to identify the main genetic components in both partners playing a role in symbiotic differences/host preferences. In the present paper, while briefly reviewing the knowledge and the challenges in plant–microbe interaction and rhizobial studies, we aim to promote research on genotype x genotype interaction between rhizobia and host plants for a rational design of synthetic symbiotic nitrogen-fixing microbial communities to be used for sustainably improving leguminous plants yield.
共生相互作用在生态学中具有重要意义,遗传信息通过共生伙伴内部以及伙伴与环境之间的相互作用形成。众所周知,宿主相关微生物组的变化有助于缓冲宿主在面对不同环境条件时的生理适应挑战。在农业中,关键的例子是共生固氮根瘤菌,已知对寄主(豆科植物)的适应和寄主生产力有很大贡献。提高作物产量和抵抗生物和非生物胁迫的整体观点是微生物组工程,通过合理设计操纵合成微生物群落来开发与宿主相关的微生物组。然而,一些研究强调,宿主中所需表型的表达存在于共生伙伴之间的物种特异性甚至基因型特异性相互作用中。因此,有必要剖析这种亲密的相互作用水平,旨在确定双方在共生差异/宿主偏好中发挥作用的主要遗传成分。本文在综述植物-微生物相互作用和根瘤菌研究进展及面临的挑战的基础上,旨在促进根瘤菌与寄主植物基因型x基因型相互作用的研究,为合理设计合成共生固氮微生物群落,实现豆科植物产量的可持续提高提供依据。
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引用次数: 4
Variability of the Russian populations of Puccinia triticina under the influence of the host plant 寄主植物影响下黑麦契诃夫俄国居群的变异
Q3 Agricultural and Biological Sciences Pub Date : 2021-03-31 DOI: 10.21638/SPBU03.2021.104
E. Gultyaeva, M. Levitin, E. Shaydayuk
The article analyzes our own data and data from the literature on the study of plant–pathogen interactions in the pathosystem of Puccinia triticina and host plants of the genera Triticum and Aegilops with different ploidy and genomes. We characterize the long-term variability of the Russian populations of the pathogen, caused by the cultivation of genetically protected cultivars of common wheat (T. aestivum). Differences of the pathogen’s virulence on hexaploid species T. aestivum and tetraploid wheat (T. durum) are shown. Data on the pathogen’s virulence on other hexaploid, tetraploid, and diploid relative species Triticum sp. and Aegilops sp. are presented. Adaptation and specificity to the host plant were shown as the key driving factors in the evolution and divergence of clonally propagating phytopathogens, which include leaf rust.
本文分析了我们自己的研究数据和文献资料,分析了小麦锈菌与不同倍性和基因组的小麦属和Aegilops属寄主植物在小麦锈菌病理系统中的植物-病原体相互作用。我们描述了俄罗斯病原菌种群的长期变异,这是由普通小麦(T. aestivum)的遗传保护品种的种植引起的。显示了病原菌对六倍体小麦和四倍体小麦(T. durum)的毒力差异。本文还报道了该病菌对其他六倍体、四倍体和二倍体亲缘种Triticum sp.和Aegilops sp.的毒力。对寄主植物的适应性和特异性是包括叶锈病在内的无性繁殖植物病原菌进化和分化的关键驱动因素。
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引用次数: 2
Some biological traits of the parasitoid wasp Rhopalicus tutela (Hymenoptera: Pteromalidae) in spruce forests of Moscow Region, Russia 俄罗斯莫斯科地区云杉林中寄生蜂Rhopalicus tutela(膜翅目:翼蜂科)的一些生物学特性
Q3 Agricultural and Biological Sciences Pub Date : 2020-12-30 DOI: 10.21638/spbu03.2020.404
Ekaterina Chilakhsaeva
Some biological traits of Rhopalicus tutela (Walker), a parasitoid of the European spruce bark beetle Ips typographus (L.), were studied both in forests of Moscow Region, Russia, and under laboratory conditions. Females of R. tutela have mature eggs after overwintering and thus do not need additional feeding to lay eggs. Under laboratory conditions at 8 °C, the life expectancy of males is 58±44 days and that of females is 36±45 days. An increase of temperature shortens the developmental period of R. tutela, which can proceed without diapause. The duration of one generation in the laboratory at 22–24 °C is 14–16 days. In spruce forests of Moscow Region, R. tutela has two or three generations per year.
对欧洲云杉树皮甲虫(ipstypgraphus, L.)的寄生蜂Rhopalicus tutela (Walker)的一些生物学特性在俄罗斯莫斯科地区的森林和实验室条件下进行了研究。雌蝶越冬后卵成熟,因此不需要额外的喂养来产卵。在8℃的实验室条件下,雄性的预期寿命为58±44天,雌性为36±45天。温度的升高缩短了黄毛鼠的发育周期,可以不滞育地进行发育。在22-24℃的实验室条件下,一个世代的持续时间为14-16天。在莫斯科地区的云杉林中,土特拉鼠每年繁殖两到三代。
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引用次数: 0
Estimation of the frost resistance of the strawberry 草莓抗冻性的估计
Q3 Agricultural and Biological Sciences Pub Date : 2020-12-30 DOI: 10.21638/spbu03.2020.402
Z. Ozherelieva, P. Prudnikov, M. Zubkova
As a result of the experiment, it was found that an increase in bound water and a decrease in free water in the leaves in the autumn are characteristic of strawberry plants against the background of a decrease in the level of total water content. The maximum ratio of bound water to free water based on the accumulation of sucrose and the amino acid proline was established in such varieties as ‘Solovushka’, ‘Tsaritsa’, ‘Sara’ and ‘Korona’. A high level of correlation was noted between the minimum air temperature and physiological and biochemical indicators of the formation of frost resistance of strawberries. A high correlation was established between the degree of freezing tolerance of strawberry plants and the fractional composition of water at the beginning of winter. In the early winter, the frost-resistant strawberry varieties ‘Solovushka’, ‘Rosinka’, ‘Tsaritsa’, ‘Korona’ and ‘Sara’ were characterized. The ability to stably maintain frost resistance during the winter thaw was shown by the varieties ‘Solovushka’, ‘Tsaritsa’ and ‘Korona’. As a result of the studies, frost-resistant strawberry varieties — ‘Solovushka’, ‘Tsaritsa’ and ‘Korona’ — were isolated.
实验结果表明,在总含水量水平下降的背景下,秋季草莓叶片中结合水的增加和游离水的减少是草莓植株的特征。根据蔗糖和氨基酸脯氨酸的积累,在“Solovushka”、“Tsaritsa”、“Sara”和“Korona”等品种中确定了结合水与游离水的最大比例。最低气温与草莓抗寒性形成的生理生化指标之间存在高度相关性。立冬时草莓植株的抗寒性与水分组成之间存在高度相关性。在初冬,对耐霜草莓品种“Solovushka”、“Rosinka”、“Tsaritsa”、《Korona》和“Sara”进行了鉴定。品种“Solovushka”、“Tsaritsa”和“Korona”在冬季解冻期间表现出稳定保持抗冻性的能力。研究的结果是,分离出了耐霜冻的草莓品种“Solovushka”、“Tsaritsa”和“Korona”。
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引用次数: 4
Toxic effects of mazut on early developmental stages of blenny Parablennius sanguinolentus 马祖特对红腹副白鳍豚早期发育阶段的毒性作用
Q3 Agricultural and Biological Sciences Pub Date : 2020-12-30 DOI: 10.21638/spbu03.2020.406
I. Rudneva
Coastal marine waters are known as spawning sites of fish and invertebrate, which are highly sensitive to crude oil and its derivates in their early developmental stages. The aim of the present study was to investigate the effects of mazut at concentrations of 0.00001, 0.02, 0.1, and 0.2 ml/l on antioxidant enzyme activities in developmental embryos (stage V) of the Black Sea blenny Parablennius sanguinolentus. The biomarkers of oxidative stress — namely superoxide dismutase (SOD), catalase (CAT), peroxidase (PER) and glutathione reductase (GR) — were investigated. This revealed a non-uniform impact of mazut concentration on fish embryos. The correlations between enzyme activities and mazut concentrations were non-linear, and tested antioxidants fluctuated independently from one another. The obtained results can be applied to the development of oil toxicity tests for assessment of water quality and in conservation biology.
沿海水域是鱼类和无脊椎动物的产卵地,在其早期发育阶段对原油及其衍生物高度敏感。本研究的目的是研究浓度为0.00001、0.02、0.1和0.2毫升/升的马祖特对黑海白暨豚发育胚胎(V期)抗氧化酶活性的影响。研究了氧化应激的生物标志物,即超氧化物歧化酶(SOD)、过氧化氢酶(CAT)、过氧化物酶(PER)和谷胱甘肽还原酶(GR)。这揭示了马祖特浓度对鱼类胚胎的不均匀影响。酶活性和马祖特浓度之间的相关性是非线性的,并且测试的抗氧化剂彼此独立波动。所获得的结果可用于开发用于水质评估的石油毒性试验和保护生物学。
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引用次数: 0
Abscisic acid utilizing rhizobacteria disturb nitrogen-fixing symbiosis of pea Pisum sativum L. 脱落酸利用根瘤菌对豌豆固氮共生的干扰。
Q3 Agricultural and Biological Sciences Pub Date : 2020-12-30 DOI: 10.21638/spbu03.2020.401
A. Belimov, A. Shaposhnikov, V. Safronova, Y. Gogolev
Rhizosphere bacteria are capable of utilizing various phytohormones (particularly auxins) as nutrients and thereby affect plant growth, nutrition and interactions with symbiotic microorganisms. Here, for the first time we evaluated the effects of rhizosphere bacteria Novosphingobium sp. P6W and Rhodococcus sp. P1Y capable of utilizing abscisic acid (ABA) on growth and nitrogen-fixing symbiosis of pea (Pisum sativum L.) line SGE and its Cd-insensitive mutant SGECdt using hydroponic culture. The plants were co-inoculated with the ABA-utilizing bacteria and nodule bacterium Rhizobium leguminosarum bv. viciae RCAM1066. Treatment with cadmium (Cd) was applied as an inducer of ABA biosynthesis in plants. In the presence of only nodule bacteria, Cd significantly inhibited the growth of roots and shoots and also decreased the nodule number and nitrogen-fixing activity in SGE peas, but not in the SGECdt mutant. Inoculation with ABA-utilizing bacteria also inhibited biomass production, nodulation and nitrogen-fixation of Cd-untreated SGE plants. This negative effect of bacteria on the SGECdt mutant was less pronounced. Contrary to this, ABA-utilizing bacteria had no effect on SGE plants treated with Cd, but decreased shoot biomass and nitrogen-fixing activity of the SGECdt mutant. Inoculation with ABA-utilizing bacteria had no effect on shoot Cd and nutrient content of both pea genotypes, suggesting that bacterial effects on plants were not associated with the plant nutrient status. We propose that the bacteria counteracted the increased ABA concentrations in SGE roots caused by Cd due to utilization of this phytohormone. However, opposite processes aimed at inhibiting and stimulating growth and legume–rhizobia symbiosis can be caused by the ABA-utilizing bacteria.
根际细菌能够利用各种植物激素(特别是生长素)作为营养物质,从而影响植物生长、营养以及与共生微生物的相互作用。在这里,我们首次利用水培方法评估了能够利用脱落酸(ABA)的根际细菌Novoshingobium sp.P6W和Rhodococcus sp.P1Y对豌豆(Pisum sativum L.)系SGE及其对镉不敏感的突变体SGECdt的生长和固氮共生的影响。用ABA利用菌和根瘤菌根瘤菌RCAM1066共同接种植株。采用镉处理作为植物ABA生物合成的诱导剂。在只有根瘤菌存在的情况下,Cd显著抑制了SGE豌豆的根和芽的生长,并降低了根瘤数量和固氮活性,但在SGECdt突变体中没有。利用ABA的细菌接种也抑制了未处理镉的SGE植物的生物量产生、结瘤和固氮。细菌对SGECdt突变体的这种负面影响不那么明显。与此相反,利用ABA的细菌对镉处理的SGE植物没有影响,但降低了SGECdt突变体的地上部生物量和固氮活性。利用ABA的细菌接种对两种豌豆基因型的地上部Cd和养分含量没有影响,表明细菌对植株的影响与植株的营养状况无关。我们提出,细菌抵消了镉引起的SGE根中ABA浓度的增加,这是由于利用了这种植物激素。然而,利用ABA的细菌可能会导致旨在抑制和刺激生长以及豆类与根瘤菌共生的相反过程。
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引用次数: 0
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