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Prior information guided deep-learning model for tumor bed segmentation in breast cancer radiotherapy. 先验信息引导的深度学习模型用于乳腺癌放疗中的肿瘤床分割。
IF 2.9 3区 医学 Q2 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2024-11-18 DOI: 10.1186/s12880-024-01469-0
Peng Huang, Hui Yan, Jiawen Shang, Xin Xie

Background and purpose: Tumor bed (TB) is the residual cavity of resected tumor after surgery. Delineating TB from CT is crucial in generating clinical target volume for radiotherapy. Due to multiple surgical effects and low image contrast, segmenting TB from soft tissue is challenging. In clinical practice, titanium clips were used as marks to guide the searching of TB. However, this information is limited and may cause large error. To provide more prior location information, the tumor regions on both pre-operative and post-operative CTs are both used by the deep learning model in segmenting TB from surrounding tissues.

Materials and methods: For breast cancer patient after surgery and going to be treated by radiotherapy, it is important to delineate the target volume for treatment planning. In clinical practice, the target volume is usually generated from TB by adding a certain margin. Therefore, it is crucial to identify TB from soft tissue. To facilitate this process, a deep learning model is developed to segment TB from CT with the guidance of prior tumor location. Initially, the tumor contour on the pre-operative CT is delineated by physician for surgical planning purpose. Then this contour is transformed to the post-operative CT via the deformable image registration between paired pre-operative and post-operative CTs. The original and transformed tumor regions are both used as inputs for predicting the possible region of TB by the deep-learning model.

Results: Compared to the one without prior tumor contour information, the dice similarity coefficient of the deep-learning model with the prior tumor contour information is improved significantly (0.812 vs. 0.520, P = 0.001). Compared to the traditional gray-level thresholding method, the dice similarity coefficient of the deep-learning model with the prior tumor contour information is improved significantly (0.812 vs.0.633, P = 0.0005).

Conclusions: The prior tumor contours on both pre-operative and post-operative CTs provide valuable information in searching for the precise location of TB on post-operative CT. The proposed method provided a feasible way to assist auto-segmentation of TB in treatment planning of radiotherapy after breast-conserving surgery.

背景和目的:肿瘤床(TB)是手术切除肿瘤后的残留腔。从 CT 中划分肿瘤床对于生成放疗的临床靶体积至关重要。由于多种手术影响和低图像对比度,从软组织中分割肿瘤床具有挑战性。在临床实践中,人们使用钛夹作为标记来引导肺结核的搜索。然而,这种信息是有限的,可能会导致较大的误差。为了提供更多的先验定位信息,深度学习模型在分割肺结核与周围组织时,会同时使用术前和术后 CT 上的肿瘤区域:对于手术后即将接受放疗的乳腺癌患者来说,划定靶区对于制定治疗计划非常重要。在临床实践中,目标体积通常是在 TB 的基础上增加一定的边缘而产生的。因此,从软组织中识别结核至关重要。为了促进这一过程,我们开发了一种深度学习模型,以事先的肿瘤位置为指导,从 CT 中分割结核。最初,医生会根据术前 CT 上的肿瘤轮廓制定手术计划。然后,通过术前和术后成对 CT 之间的可变形图像配准,将该轮廓转换到术后 CT 上。原始肿瘤区域和转换后的肿瘤区域都将作为深度学习模型预测肺结核可能发生区域的输入:结果:与没有先验肿瘤轮廓信息的深度学习模型相比,有先验肿瘤轮廓信息的深度学习模型的骰子相似系数显著提高(0.812 vs. 0.520,P = 0.001)。与传统的灰度阈值法相比,深度学习模型与先验肿瘤轮廓信息的骰子相似系数得到了明显改善(0.812 vs.0.633, P = 0.0005):结论:术前和术后 CT 上的肿瘤轮廓为在术后 CT 上搜索结核病的精确位置提供了有价值的信息。所提出的方法为保乳手术后放疗计划中结核的自动分割提供了一种可行的辅助方法。
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引用次数: 0
Prediction of esophageal fistula in radiotherapy/chemoradiotherapy for patients with advanced esophageal cancer by a clinical-deep learning radiomics model : Prediction of esophageal fistula in radiotherapy/chemoradiotherapy patients. 通过临床深度学习放射组学模型预测晚期食管癌放疗/化疗患者的食管瘘:预测放疗/化疗患者的食管瘘。
IF 2.9 3区 医学 Q2 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2024-11-18 DOI: 10.1186/s12880-024-01473-4
Yuxin Zhang, Xu Cheng, Xianli Luo, Ruixia Sun, Xiang Huang, Lingling Liu, Min Zhu, Xueling Li

Background: Esophageal fistula (EF), a rare and potentially fatal complication, can be better managed with predictive models for personalized treatment plans in esophageal cancers. We aim to develop a clinical-deep learning radiomics model for effectively predicting the occurrence of EF.

Methods: The study involved esophageal cancer patients undergoing radiotherapy or chemoradiotherapy. Arterial phase enhanced CT images were used to extract handcrafted and deep learning radiomic features. Along with clinical information, a 3-step feature selection method (statistical tests, Least Absolute Shrinkage and Selection Operator, and Recursive Feature Elimination) was used to identify five feature sets in training cohort for constructing random forest EF prediction models. Model performance was compared and validated in both retrospective and prospective test cohorts.

Results: One hundred seventy five patients (122 in training and 53 in test cohort)were retrospectively collected from April 2018 to June 2022. An additional 27 patients were enrolled as a prospective test cohort from June 2022 to December 2023. Post-selection in the training cohort, five feature sets were used for model construction: clinical, handcrafted radiomic, deep learning radiomic, clinical-handcrafted radiomic, and clinical-deep learning radiomic. The clinical-deep learning radiomic model excelled with AUC of 0.89 (95% Confidence Interval: 0.83-0.95) in the training cohort, 0.81 (0.65-0.94) in the test cohort, and 0.85 (0.71-0.97) in the prospective test cohort. Brier-score and calibration curve analyses validated its predictive ability.

Conclusions: The clinical-deep learning radiomic model can effectively predict EF in patients with advanced esophageal cancer undergoing radiotherapy or chemoradiotherapy.

背景:食管瘘(EF)是一种罕见且可能致命的并发症,利用预测模型可以更好地管理食管癌的个性化治疗方案。我们旨在开发一种临床深度学习放射组学模型,以有效预测 EF 的发生:研究涉及接受放疗或化放疗的食管癌患者。研究对象为接受放疗或化疗的食管癌患者,使用动脉相位增强 CT 图像提取手工和深度学习放射组学特征。结合临床信息,采用三步特征选择法(统计检验、最小绝对收缩和选择操作符以及递归特征消除)在训练队列中识别出五个特征集,用于构建随机森林 EF 预测模型。在回顾性和前瞻性测试队列中对模型性能进行了比较和验证:从 2018 年 4 月至 2022 年 6 月,回顾性收集了 175 名患者(其中 122 名在训练队列中,53 名在测试队列中)。在 2022 年 6 月至 2023 年 12 月期间,又有 27 名患者被纳入前瞻性测试队列。在训练队列中进行筛选后,使用五个特征集构建模型:临床、手工制作放射组学、深度学习放射组学、临床-手工制作放射组学和临床-深度学习放射组学。临床-深度学习放射学模型表现优异,在训练队列中的 AUC 为 0.89(95% 置信区间:0.83-0.95),在测试队列中的 AUC 为 0.81(0.65-0.94),在前瞻性测试队列中的 AUC 为 0.85(0.71-0.97)。布赖尔分数和校准曲线分析验证了该模型的预测能力:结论:临床深度学习放射学模型能有效预测接受放疗或化疗的晚期食管癌患者的EF。
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引用次数: 0
The predictive value of nomogram for adnexal cystic-solid masses based on O-RADS US, clinical and laboratory indicators. 基于 O-RADS US、临床和实验室指标的附件囊实性肿块预测值提名图。
IF 2.9 3区 医学 Q2 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2024-11-18 DOI: 10.1186/s12880-024-01497-w
Chunchun Jin, Meifang Deng, Yanling Bei, Chan Zhang, Shiya Wang, Shun Yang, Lvhuan Qiu, Xiuyan Liu, Qiuxiang Chen

Background: Ovarian cancer remains a leading cause of death among women, largely due to its asymptomatic early stages and high mortality when diagnosed late. Early detection significantly improves survival rates, and the Ovarian-Adnexal Reporting and Data System Ultrasound (O-RADS US) is currently the most commonly used method, but has limitations in specificity and accuracy. While O-RADS US has standardized reporting, its sensitivity can lead to the misdiagnosis of benign masses as malignant, resulting in overtreatment. This study aimed to construct a nomogram model based on the O-RADS US and clinical and laboratory indicators to predict the malignancy risk of adnexal cystic-solid masses.

Methods: This retrospective study collected data from patients with adnexal cystic-solid masses who underwent ultrasonography and were pathologically confirmed between January 2021 and December 2023 at the First Affiliated Hospital of Shenzhen University. They were categorized into benign and malignant groups according to pathological findings. Least absolute shrinkage and selection operator (LASSO) regression analysis was used to select the most relevant predictors of ovarian cancer. A nomogram model was constructed, and its diagnostic performance was calculated. We bootstrapped the data 500 times to perform internal verification, drew a calibration curve to verify the prediction ability, and performed a decision curve analysis to assess clinical usefulness.

Results: A total of 399 patients with adnexal cystic-solid masses were included in this study: 327 in the benign group and 72 in the malignant group. Five predictors associated with the risk of malignancy of adnexal cystic-solid masses were selected using LASSO regression: O-RADS, acoustic shadowing, postmenopausal status, CA125, and HE4. The area under the curve, sensitivity, specificity, accuracy, positive and negative predictive values of the nomogram were 0.909, 83.3%, 82.9%, 83.0%, 51.7%, and 95.8%, respectively. The calibration curve of the nomogram showed good consistency between the predicted and actual probabilities, and the decision curve showed good clinical usefulness.

Conclusion: The nomogram model based on O-RADS US and clinical and laboratory indicators can be used to predict the risk of malignancy in adnexal cystic-solid masses, with high predictive performance, good calibration, and clinical usefulness.

背景:卵巢癌仍然是导致妇女死亡的主要原因之一,这主要是由于卵巢癌早期无症状,晚期诊断时死亡率很高。早期发现可大大提高生存率,而卵巢-附件报告和数据系统超声检查(O-RADS US)是目前最常用的方法,但在特异性和准确性方面存在局限性。虽然 O-RADS US 具有标准化报告的特点,但其敏感性可能导致良性肿块被误诊为恶性肿块,从而造成过度治疗。本研究旨在构建一个基于 O-RADS US 和临床及实验室指标的提名图模型,以预测附件囊实性肿块的恶性风险:这项回顾性研究收集了2021年1月至2023年12月期间在深圳大学附属第一医院接受超声检查并经病理证实的附件囊实性肿块患者的数据。根据病理结果分为良性和恶性两组。采用最小绝对收缩和选择算子(LASSO)回归分析来选择与卵巢癌最相关的预测因子。我们构建了一个提名图模型,并计算了其诊断性能。我们对数据进行了500次引导以进行内部验证,绘制了校准曲线以验证预测能力,并进行了决策曲线分析以评估临床实用性:结果:本研究共纳入了 399 例附件囊实性肿块患者:良性组 327 例,恶性组 72 例。采用 LASSO 回归法选出了与附件囊实性肿块恶性风险相关的五个预测因子:O-RADS、声影、绝经后状态、CA125 和 HE4。提名图的曲线下面积、灵敏度、特异性、准确性、阳性预测值和阴性预测值分别为 0.909、83.3%、82.9%、83.0%、51.7% 和 95.8%。提名图的校准曲线显示预测概率与实际概率之间具有良好的一致性,决策曲线显示了良好的临床实用性:基于 O-RADS US 和临床及实验室指标的提名图模型可用于预测附件囊实性肿块的恶性肿瘤风险,具有较高的预测性能、良好的校准性和临床实用性。
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引用次数: 0
The study on ultrasound image classification using a dual-branch model based on Resnet50 guided by U-net segmentation results. 在 U-net 分割结果的指导下,使用基于 Resnet50 的双分支模型对超声波图像进行分类的研究。
IF 2.9 3区 医学 Q2 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2024-11-18 DOI: 10.1186/s12880-024-01486-z
Xu Yang, Shuo'ou Qu, Zhilin Wang, Lingxiao Li, Xiaofeng An, Zhibin Cong

In recent years, the incidence of nodular thyroid diseases has been increasing annually. Ultrasonography has become a routine diagnostic tool for thyroid nodules due to its high real-time capabilities and low invasiveness. However, thyroid images obtained from current ultrasound tests often have low resolution and are plagued by significant noise interference. Regional differences in medical conditions and varying levels of physician experience can impact the accuracy and efficiency of diagnostic results. With the advancement of deep learning technology, deep learning models are used to identify whether a nodule in a thyroid ultrasound image is benign or malignant. This helps to close the gap between doctors' experience and equipment differences, improving the accuracy of the initial diagnosis of thyroid nodules. To cope with the problem that thyroid ultrasound images contain complex background and noise as well as poorly defined local features. in this paper, we first construct an improved ResNet50 classification model that uses a two-branch input and incorporates a global attention lightening module. This model is used to improve the accuracy of benign and malignant nodule classification in thyroid ultrasound images and to reduce the computational effort due to the two-branch structure.We constructed a U-net segmentation model incorporating our proposed ACR module, which uses hollow convolution with different dilation rates to capture multi-scale contextual information for feature extraction of nodules in thyroid ultrasound images and uses the results of the segmentation task as an auxiliary branch for the classification task to guide the classification model to focus on the lesion region more efficiently in the case of weak local features. The classification model is guided to focus on the lesion region more efficiently, and the classification and segmentation sub-networks are respectively improved specifically for this study, which is used to improve the accuracy of classifying the benign and malignant nature of the nodules in thyroid ultrasound images. The experimental results show that the four evaluation metrics of accuracy, precision, recall, and f1 of the improved model are 96.01%, 93.3%, 98.8%, and 96.0%, respectively. The improvements were 5.7%, 1.6%, 13.1%, and 7.4%, respectively, compared with the baseline classification model.

近年来,甲状腺结节性疾病的发病率逐年上升。超声波检查因其实时性高、创伤小而成为甲状腺结节的常规诊断工具。然而,目前的超声检测所获得的甲状腺图像分辨率往往较低,且存在明显的噪声干扰。医疗条件的地区差异和医生经验水平的不同都会影响诊断结果的准确性和效率。随着深度学习技术的发展,深度学习模型可用于识别甲状腺超声图像中的结节是良性还是恶性。这有助于缩小医生经验与设备差异之间的差距,提高甲状腺结节初步诊断的准确性。针对甲状腺超声图像包含复杂背景和噪声以及局部特征不明确的问题,本文首先构建了一个改进的 ResNet50 分类模型,该模型使用双分支输入,并结合了全局注意力减弱模块。该模型用于提高甲状腺超声图像中良性和恶性结节分类的准确性,并减少双分支结构带来的计算量。我们构建了一个 U 网分割模型,其中包含了我们提出的 ACR 模块,该模块使用不同扩张率的空心卷积来捕捉甲状腺超声图像中结节的多尺度上下文信息,用于特征提取,并将分割任务的结果作为分类任务的辅助分支,在局部特征较弱的情况下引导分类模型更有效地聚焦于病变区域。在引导分类模型更有效地关注病变区域的基础上,分别对分类子网络和分割子网络进行了专门改进,用于提高甲状腺超声图像中结节良恶性分类的准确性。实验结果表明,改进模型的准确率、精确度、召回率和 f1 四个评价指标分别为 96.01%、93.3%、98.8% 和 96.0%。与基线分类模型相比,分别提高了 5.7%、1.6%、13.1% 和 7.4%。
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引用次数: 0
Diagnostic performance of adult-based thyroid imaging reporting and data systems in pediatric thyroid carcinoma: a retrospective study. 基于成人甲状腺成像报告和数据系统在小儿甲状腺癌中的诊断性能:一项回顾性研究。
IF 2.9 3区 医学 Q2 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2024-11-15 DOI: 10.1186/s12880-024-01496-x
Wanying Li, Yiyan Du, Yao Wei, Ruie Feng, Ying Wang, Xiao Yang, Hongyan Wang, Jianchu Li

Background: Thyroid nodules diagnosed in children pose a greater risk of malignancy compared to those in adults. However, there is no ultrasound thyroid nodule evaluation system aimed at children. The objective of this research is to assess the diagnostic performance of the adult-based American College of Radiology Thyroid Imaging Reporting and Data System (ACR-TIRADS) and Chinese Thyroid Imaging Reporting and Data System (C-TIRADS) in pediatric thyroid carcinoma.

Methods: The preoperative ultrasound images of 177 thyroid lesions in 136 pediatric patients aged 18 or younger who underwent thyroid surgery or fine needle aspiration (FNA) at our center from July 2017 to July 2022 were reviewed. The sonographic characteristics of pediatric thyroid carcinoma were compared and analyzed in contrast to benign nodules. All the nodules were evaluated by the ACR-TIRADS and the C-TIRADS respectively.

Results: Ultrasound features such as solid composition (94.8%), hypoechogenicity or marked hypoechogenicity (94.8-95.7%) and microcalcification (78.3-84.3%) were more common in pediatric malignant nodules (P-values < 0.05). The areas under receiver operating characteristic curves (AUC) of the ACR-TIRADS and the C-TIRADS in diagnosing pediatric thyroid carcinoma were 0.903-0.906, 0.907-0.909 (P-value > 0.05). The interobserver agreement of both the ACR-TIRADS and the C-TIRADS was strong (weighted Kappa > 0.90).

Conclusions: Both the C-TIRADS and the ACR-TIRADS owned great diagnostic performance and strong interobserver agreement in diagnosing pediatric thyroid carcinoma. However, a more complete and specific ultrasound evaluation system for pediatric thyroid nodules is still needed.

背景:与成人甲状腺结节相比,儿童甲状腺结节的恶性风险更高。然而,目前还没有针对儿童的超声甲状腺结节评估系统。本研究旨在评估基于成人的美国放射学会甲状腺影像报告和数据系统(ACR-TIRADS)和中国甲状腺影像报告和数据系统(C-TIRADS)对小儿甲状腺癌的诊断性能:回顾性分析2017年7月至2022年7月在我中心接受甲状腺手术或细针穿刺(FNA)的136例18岁及以下小儿患者的177例甲状腺病变的术前超声图像。对比分析了小儿甲状腺癌与良性结节的声像图特征。所有结节分别按照 ACR-TIRADS 和 C-TIRADS 进行评估:结果:实性成分(94.8%)、低回声或明显低回声(94.8%-95.7%)和微钙化(78.3%-84.3%)等超声特征在小儿恶性结节中更为常见(P值为0.05)。ACR-TIRADS和C-TIRADS的观察者间一致性很好(加权卡帕>0.90):结论:C-TIRADS和ACR-TIRADS在诊断小儿甲状腺癌方面都具有很好的诊断性能和很强的观察者间一致性。然而,我们仍然需要一个更完整、更特异的小儿甲状腺结节超声评估系统。
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引用次数: 0
Systemic immune-related spleen radiomics predict progression-free survival in patients with locally advanced cervical cancer underwent definitive chemoradiotherapy. 全身免疫相关脾脏放射组学预测接受明确放化疗的局部晚期宫颈癌患者的无进展生存期。
IF 2.9 3区 医学 Q2 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2024-11-15 DOI: 10.1186/s12880-024-01492-1
Yi Li, Longxiang Guo, Peng Xie, Yuhui Liu, Yuanlin Li, Ao Liu, Minghuan Li

Purpose: Systemic immunity is essential for driving therapeutically induced antitumor immune responses, and the spleen may reflect alterations in systemic immunity. This study aimed to evaluate the predictive value of contrast-enhanced CT-based spleen radiomics for progression-free survival (PFS) in patients with locally advanced cervical cancer (LACC) who underwent definitive chemoradiotherapy (dCRT). Additionally, we investigated the role of spleen radiomics features and changes in spleen volume in assessing systemic immunity.

Methods: This retrospective study included 257 patients with LACC who underwent dCRT. The patients were randomly divided into training and validation groups in a 7:3 ratio. Radiomic features were extracted from CT images obtained before and after dCRT. Radiomic scores (Radscore) were calculated using features selected through least absolute shrinkage and selection operator (LASSO) Cox regression. The percentage change in spleen volume was determined from measurements taken before and after treatment. Independent prognostic factors for PFS were identified through multivariate Cox regression analyses. Model performance was evaluated with the receiver operating characteristic (ROC) curve and the C-index. The Radscore cut-off value, determined from the ROC curve, was used to stratify patients into high- and low-risk survival groups. The Wilcoxon test was used to analyze differences in hematological parameters between different survival risk groups and between different spleen volume change groups. Spearman correlation analysis was used to explore the relationship between spleen volume change and hematological parameters.

Results: Independent prognostic factors included FIGO stage, pre-treatment neutrophil-to-lymphocyte ratio (pre-NLR), spleen volume change, and Radscore. The radiomics-combined model demonstrated the best predictive performance for PFS in both the training group (AUC: 0.923, C-index: 0.884) and the validation group (AUC: 0.895, C-index: 0.834). Compared to the low-risk group, the high-risk group had higher pre-NLR (p = 0.0054) and post-NLR (p = 0.038). Additionally, compared to the decreased spleen volume group, the increased spleen volume group had lower post-NLR (p = 0.0059) and post-treatment platelet-to-lymphocyte ratio (p < 0.001).

Conclusion: Spleen radiomics combined with clinical features can effectively predict PFS in patients with LACC after dCRT. Furthermore, spleen radiomics features and changes in spleen volume can reflect alterations in systemic immunity.

目的:全身免疫对于驱动治疗诱导的抗肿瘤免疫反应至关重要,而脾脏可反映全身免疫的改变。本研究旨在评估对比增强 CT 脾脏放射组学对接受确定性化放疗(dCRT)的局部晚期宫颈癌(LACC)患者无进展生存期(PFS)的预测价值。此外,我们还研究了脾脏放射组学特征和脾脏体积变化在评估全身免疫力中的作用:这项回顾性研究纳入了 257 例接受 dCRT 的 LACC 患者。患者按 7:3 的比例随机分为训练组和验证组。从 dCRT 前后的 CT 图像中提取放射体征。通过最小绝对缩小和选择算子(LASSO)Cox 回归计算出特征,并以此计算出放射体征评分(Radscore)。根据治疗前后的测量结果确定脾脏体积变化的百分比。通过多变量 Cox 回归分析确定了 PFS 的独立预后因素。模型性能通过接收者操作特征曲线(ROC)和 C 指数进行评估。根据 ROC 曲线确定的 Radscore 临界值用于将患者分为高危和低危生存组。Wilcoxon 检验用于分析不同生存风险组之间和不同脾脏体积变化组之间血液学参数的差异。斯皮尔曼相关分析用于探讨脾脏体积变化与血液学指标之间的关系:独立预后因素包括FIGO分期、治疗前中性粒细胞与淋巴细胞比值(pre-NLR)、脾脏体积变化和Radscore。在训练组(AUC:0.923,C-index:0.884)和验证组(AUC:0.895,C-index:0.834)中,放射组学组合模型对PFS的预测效果最好。与低风险组相比,高风险组的 NLR 前(p = 0.0054)和 NLR 后(p = 0.038)均较高。此外,与脾脏体积减小组相比,脾脏体积增大组的 NLR 后(p = 0.0059)和治疗后血小板与淋巴细胞比值(p 结论:脾脏放射组学与临床研究相结合,可为脾脏疾病的诊断和治疗提供依据:脾脏放射组学与临床特征相结合可有效预测 LACC 患者 dCRT 后的 PFS。此外,脾脏放射组学特征和脾脏体积的变化可反映全身免疫的改变。
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引用次数: 0
T1 mapping-based radiomics in the identification of histological types of lung cancer: a reproducibility and feasibility study. 基于 T1 图谱的放射组学在肺癌组织学类型鉴定中的应用:可重复性和可行性研究。
IF 2.9 3区 医学 Q2 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2024-11-14 DOI: 10.1186/s12880-024-01487-y
Jianqin Jiang, Yong Xiao, Jia Liu, Lei Cui, Weiwei Shao, Shaowei Hao, Gaofeng Xu, Yigang Fu, Chunhong Hu

Background: T1 mapping can quantify the longitudinal relaxation time of tissues. This study aimed to investigate the repeatability and reproducibility of T1 mapping radiomics features of lung cancer and the feasibility of T1 mapping-based radiomics model to predict its pathological types.

Methods: The chest T1 mapping images and clinical characteristics of 112 lung cancer patients (54 with adenocarcinoma and 58 with other types of lung cancer) were collected retrospectively. 54 patients underwent twice short-term T1 mapping scans. Regions of interest were manually delineated on T1 mapping pseudo-color images to measure the mean native T1 values of lung cancer, and radiomics features were extracted using the semi-automatic segmentation method by two independent observers. The patients were randomly divided into training group (77 cases) and validation group (35 cases) with the ratio of 7:3. Interclass correlation coefficients (ICCs), Student's t-test or Mann-Whitney U tests and least absolute shrinkage and selection operator (LASSO) were used for feature selection. The optimum features were selected to establish a logistic regression (LR) radiomics model. Independent sample t-test, Mann Whitney U-test or chi square test were used to compare the differences of clinical characteristics and T1 values. Performance was compared by the area under the receiver operating characteristic (ROC) curve (AUC).

Results: In the training group, smoking history, lesion type and native T1 values were different between adenocarcinoma and non-adenocarcinoma patients (P = 0.004-0.038). There were 1035 (54.30%) radiomics features meet the intra-and inter-observer, and test-retest reproducibility with ICC > 0.80. After feature dimensionality reduction and model construction, the AUC of T1 mapping-based radiomics model for predicting the pathological types of lung cancer was 0.833 and 0.843, respectively, in the training and validation cohorts. The AUCs of T1 value and clinical model (including smoking history and lesion type) were 0.657 and 0.692 in the training group, and 0.722 and 0.686 in the validation group. Combined with T1 mapping radiomics, clinical model and T1 value to establish a combined model, the prediction efficiency was further improved to 0.895 and 0.915 in the training and validation groups.

Conclusions: About 50% of the T1 mapping-based radiomics features displayed relatively poor repeatability and reproducibility. While T1 mapping-based radiomics model is valuable in identification of histological types of lung cancer despite the measurement variability. Combination of T1 mapping radiomics model, clinical characteristics and native T1 value can improve the predictive value of pathological types of lung cancer.

背景:T1图谱可以量化组织的纵向弛豫时间。本研究旨在探讨肺癌 T1 图谱放射组学特征的重复性和再现性,以及基于 T1 图谱的放射组学模型预测肺癌病理类型的可行性:方法:回顾性收集112名肺癌患者(54名腺癌患者和58名其他类型肺癌患者)的胸部T1映射图像和临床特征。54 名患者接受了两次短期 T1 映像扫描。在 T1 映射伪彩色图像上手动划分感兴趣区,测量肺癌的平均原生 T1 值,并由两名独立观察者使用半自动分割方法提取放射组学特征。患者按 7:3 的比例随机分为训练组(77 例)和验证组(35 例)。采用类间相关系数(ICC)、学生 t 检验或 Mann-Whitney U 检验以及最小绝对收缩和选择算子(LASSO)进行特征选择。选出的最佳特征用于建立逻辑回归(LR)放射组学模型。独立样本 t 检验、曼-惠特尼 U 检验或卡方检验用于比较临床特征和 T1 值的差异。用接收器操作特征曲线(ROC)下面积(AUC)比较结果:在训练组中,腺癌和非腺癌患者的吸烟史、病变类型和原始 T1 值存在差异(P = 0.004-0.038)。有1035个(54.30%)放射组学特征符合观察者内、观察者间和重复测试的重现性,ICC>0.80。经过特征降维和模型构建后,基于 T1 映射的放射组学模型预测肺癌病理类型的 AUC 在训练组和验证组中分别为 0.833 和 0.843。在训练组中,T1值和临床模型(包括吸烟史和病变类型)的AUC分别为0.657和0.692,在验证组中分别为0.722和0.686。结合T1映射放射组学、临床模型和T1值建立综合模型后,训练组和验证组的预测效率进一步提高到0.895和0.915:结论:基于 T1 映射的放射组学特征中约有 50%的重复性和再现性相对较差。尽管存在测量变异性,但基于 T1 映射的放射组学模型对肺癌组织学类型的鉴定仍有价值。将T1映射放射组学模型、临床特征和原始T1值相结合,可提高肺癌病理类型的预测价值。
{"title":"T1 mapping-based radiomics in the identification of histological types of lung cancer: a reproducibility and feasibility study.","authors":"Jianqin Jiang, Yong Xiao, Jia Liu, Lei Cui, Weiwei Shao, Shaowei Hao, Gaofeng Xu, Yigang Fu, Chunhong Hu","doi":"10.1186/s12880-024-01487-y","DOIUrl":"10.1186/s12880-024-01487-y","url":null,"abstract":"<p><strong>Background: </strong>T1 mapping can quantify the longitudinal relaxation time of tissues. This study aimed to investigate the repeatability and reproducibility of T1 mapping radiomics features of lung cancer and the feasibility of T1 mapping-based radiomics model to predict its pathological types.</p><p><strong>Methods: </strong>The chest T1 mapping images and clinical characteristics of 112 lung cancer patients (54 with adenocarcinoma and 58 with other types of lung cancer) were collected retrospectively. 54 patients underwent twice short-term T1 mapping scans. Regions of interest were manually delineated on T1 mapping pseudo-color images to measure the mean native T1 values of lung cancer, and radiomics features were extracted using the semi-automatic segmentation method by two independent observers. The patients were randomly divided into training group (77 cases) and validation group (35 cases) with the ratio of 7:3. Interclass correlation coefficients (ICCs), Student's t-test or Mann-Whitney U tests and least absolute shrinkage and selection operator (LASSO) were used for feature selection. The optimum features were selected to establish a logistic regression (LR) radiomics model. Independent sample t-test, Mann Whitney U-test or chi square test were used to compare the differences of clinical characteristics and T1 values. Performance was compared by the area under the receiver operating characteristic (ROC) curve (AUC).</p><p><strong>Results: </strong>In the training group, smoking history, lesion type and native T1 values were different between adenocarcinoma and non-adenocarcinoma patients (P = 0.004-0.038). There were 1035 (54.30%) radiomics features meet the intra-and inter-observer, and test-retest reproducibility with ICC > 0.80. After feature dimensionality reduction and model construction, the AUC of T1 mapping-based radiomics model for predicting the pathological types of lung cancer was 0.833 and 0.843, respectively, in the training and validation cohorts. The AUCs of T1 value and clinical model (including smoking history and lesion type) were 0.657 and 0.692 in the training group, and 0.722 and 0.686 in the validation group. Combined with T1 mapping radiomics, clinical model and T1 value to establish a combined model, the prediction efficiency was further improved to 0.895 and 0.915 in the training and validation groups.</p><p><strong>Conclusions: </strong>About 50% of the T1 mapping-based radiomics features displayed relatively poor repeatability and reproducibility. While T1 mapping-based radiomics model is valuable in identification of histological types of lung cancer despite the measurement variability. Combination of T1 mapping radiomics model, clinical characteristics and native T1 value can improve the predictive value of pathological types of lung cancer.</p>","PeriodicalId":9020,"journal":{"name":"BMC Medical Imaging","volume":"24 1","pages":"308"},"PeriodicalIF":2.9,"publicationDate":"2024-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11566602/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142614023","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparison of different acceleration factors of artificial intelligence-compressed sensing for brachial plexus MRI imaging: scanning time and image quality. 人工智能压缩传感用于臂丛磁共振成像的不同加速因子比较:扫描时间和图像质量。
IF 2.9 3区 医学 Q2 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2024-11-14 DOI: 10.1186/s12880-024-01493-0
Tianxin Cheng, Feifei Li, Xuetao Jiang, Dan Yu, Jie Wei, Ying Yuan, Hui Xu

Background: 3D brachial plexus MRI scanning is prone to examination failure due to the lengthy scan times, which can lead to patient discomfort and motion artifacts. Our purpose is to investigate the efficacy of artificial intelligence-assisted compressed sensing (ACS) in improving the acceleration efficiency and maintaining or enhancing the image quality of brachial plexus MR imaging.

Methods: A total of 30 volunteers underwent 3D sampling perfection with application-optimized contrast using different flip angle evolution short time inversion recovery using a 3.0T MR scanner. The imaging protocol included parallel imaging (PI) and ACS employing acceleration factors of 4.37, 6.22, and 9.03. Radiologists evaluated the neural detail display, fat suppression effectiveness, presence of image artifacts, and overall image quality. Signal intensity and standard deviation of specific anatomical sites within the brachial plexus and background tissues were measured, with signal-to-noise ratio (SNR) and contrast-to-noise ratio (CNR) subsequently calculated. Cohen's weighted kappa (κ), One-way ANOVA, Kruskal-Wallis and pairwise comparisons with Bonferroni-adjusted significance level. P < 0.05 was considered statistically significant.

Results: ACS significantly reduced scanning times compared to PI. Evaluations revealed differences in subjective scores and SNR across the sequences (P < 0.05), with no marked differences in CNR (P > 0.05). For subjective scores, ACS 9.03 were lower than the other three sequences in neural details display, image artifacts and overall image quality. There was no significant difference in fat suppression. For objective quantitative evaluation, SNR of right C6 root in ACS 6.22 and ACS 9.03 was higher than that in PI; SNR of left C6 root in ACS 4.37, ACS 6.22 and ACS 9.03 was higher than that in PI; SNR of medial cord in ACS 6.22, ACS 9.03 was higher than that in PI.

Conclusion: Compared with PI, ACS can shorten scanning time while ensuring good image quality.

背景:三维臂丛磁共振成像扫描容易因扫描时间过长而导致检查失败,从而引起患者不适和运动伪影。我们的目的是研究人工智能辅助压缩传感(ACS)在提高加速效率、保持或提高臂丛磁共振成像图像质量方面的功效:共有 30 名志愿者使用 3.0T 磁共振扫描仪进行了三维取样完善,并使用不同翻转角进化短时反转恢复进行了应用优化对比。成像方案包括平行成像(PI)和 ACS,加速因子分别为 4.37、6.22 和 9.03。放射科医生对神经细节显示、脂肪抑制效果、图像伪影和整体图像质量进行了评估。测量了臂丛和背景组织内特定解剖部位的信号强度和标准偏差,随后计算了信噪比(SNR)和对比度-信噪比(CNR)。科恩加权卡帕(κ)、单因子方差分析、Kruskal-Wallis 和成对比较,显著性水平经 Bonferroni-adjusted 调整。P 结果:与 PI 相比,ACS 明显缩短了扫描时间。评估显示,不同序列的主观评分和信噪比存在差异(P 0.05)。在主观评分方面,ACS 9.03 在神经细节显示、图像伪影和整体图像质量方面均低于其他三个序列。脂肪抑制方面没有明显差异。在客观定量评价方面,ACS 6.22 和 ACS 9.03 中右侧 C6 根的信噪比高于 PI;ACS 4.37、ACS 6.22 和 ACS 9.03 中左侧 C6 根的信噪比高于 PI;ACS 6.22 和 ACS 9.03 中内侧脊髓的信噪比高于 PI:结论:与 PI 相比,ACS 可缩短扫描时间,同时保证良好的图像质量。
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引用次数: 0
Enhancing image-based diagnosis of gastrointestinal tract diseases through deep learning with EfficientNet and advanced data augmentation techniques. 利用 EfficientNet 和先进的数据增强技术进行深度学习,增强基于图像的胃肠道疾病诊断。
IF 2.9 3区 医学 Q2 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2024-11-12 DOI: 10.1186/s12880-024-01479-y
A M J Md Zubair Rahman, R Mythili, K Chokkanathan, T R Mahesh, K Vanitha, Temesgen Engida Yimer

The early detection and diagnosis of gastrointestinal tract diseases, such as ulcerative colitis, polyps, and esophagitis, are crucial for timely treatment. Traditional imaging techniques often rely on manual interpretation, which is subject to variability and may lack precision. Current methodologies leverage conventional deep learning models that, while effective to an extent, often suffer from overfitting and generalization issues on medical image datasets due to the intricate and subtle variations in disease manifestations. These models typically do not fully utilize the potential of transfer learning or advanced data augmentation, leading to less-than-optimal performance, especially in diverse real-world scenarios where data variability is high. This study introduces a robust model using the EfficientNetB5 architecture combined with a sophisticated data augmentation strategy. The model is tailored for the high variability and intricate details present in gastrointestinal tract disease images. By integrating transfer learning with maximal pooling and extensive regularization, the model aims to enhance diagnostic accuracy and reduce overfitting. The proposed model achieved a test accuracy of 98.89%, surpassing traditional methods by incorporating advanced regularization and augmentation techniques. The application of horizontal flipping and dynamic scaling during training significantly improved the model's ability to generalize, evidenced by a low-test loss of 0.230 and high precision metrics across all classes. The proposed deep learning framework demonstrates superior performance in the automated classification of gastrointestinal diseases from image data. By addressing key limitations of existing models through innovative techniques, this study contributes to the enhancement of diagnostic processes in medical imaging, potentially leading to more accurate and timely disease interventions.

早期发现和诊断胃肠道疾病,如溃疡性结肠炎、息肉和食管炎,对于及时治疗至关重要。传统的成像技术通常依赖于人工判读,而人工判读存在变异性,可能缺乏精确性。目前的方法利用传统的深度学习模型,虽然在一定程度上有效,但由于疾病表现错综复杂、变化微妙,这些模型在医学影像数据集上往往存在过度拟合和泛化问题。这些模型通常没有充分利用迁移学习或高级数据增强的潜力,导致性能不尽如人意,尤其是在数据变异性较高的多样化现实世界场景中。本研究采用 EfficientNetB5 架构,结合先进的数据增强策略,推出了一种稳健的模型。该模型专为胃肠道疾病图像中存在的高变异性和复杂细节而量身定制。通过将迁移学习与最大池化和广泛正则化相结合,该模型旨在提高诊断准确率并减少过拟合。通过采用先进的正则化和增强技术,该模型的测试准确率达到了 98.89%,超过了传统方法。训练过程中水平翻转和动态缩放的应用大大提高了模型的泛化能力,0.230 的低测试损失和所有类别的高精度指标就是证明。所提出的深度学习框架在从图像数据对胃肠道疾病进行自动分类方面表现出了卓越的性能。本研究通过创新技术解决了现有模型的主要局限性,有助于增强医学影像诊断过程,从而有可能实现更准确、更及时的疾病干预。
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引用次数: 0
A deep learning based method for left ventricular strain measurements: repeatability and accuracy compared to experienced echocardiographers. 基于深度学习的左心室应变测量方法:与经验丰富的超声心动图医师相比的可重复性和准确性。
IF 2.9 3区 医学 Q2 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2024-11-12 DOI: 10.1186/s12880-024-01470-7
Magnus Rogstadkjernet, Sigurd Z Zha, Lars G Klæboe, Camilla K Larsen, John M Aalen, Esther Scheirlynck, Bjørn-Jostein Singstad, Steven Droogmans, Bernard Cosyns, Otto A Smiseth, Kristina H Haugaa, Thor Edvardsen, Eigil Samset, Pål H Brekke

Background: Speckle tracking echocardiography (STE) provides quantification of left ventricular (LV) deformation and is useful in the assessment of LV function. STE is increasingly being used clinically, and every effort to simplify and standardize STE is important. Manual outlining of regions of interest (ROIs) is labor intensive and may influence assessment of strain values.

Purpose: We hypothesized that a deep learning (DL) model, trained on clinical echocardiographic exams, can be combined with a readily available echocardiographic analysis software, to automate strain calculation with comparable fidelity to trained cardiologists.

Methods: Data consisted of still frame echocardiographic images with cardiologist-defined ROIs from 672 clinical echocardiographic exams from a university hospital outpatient clinic. Exams included patients with ischemic heart disease, heart failure, valvular disease, and conduction abnormalities, and some healthy subjects. An EfficientNetB1-based architecture was employed, and different techniques and properties including data set size, data quality, augmentations, and transfer learning were evaluated. DL predicted ROIs were reintroduced into commercially available echocardiographic analysis software to automatically calculate strain values.

Results: DL-automated strain calculations had an average absolute difference of 0.75 (95% CI 0.58-0.92) for global longitudinal strain (GLS), and 1.16 (95% CI 1.03-1.29) for single-projection longitudinal strain (LS), compared to operators. A Bland-Altman plot revealed no obvious bias, though there were fewer outliers in the lower average LS ranges. Techniques and data properties yielded no significant increase/decrease in performance.

Conclusion: The study demonstrates that DL-assisted, automated strain measurements are feasible, and provide results within interobserver variation. Employing DL in echocardiographic analyses could further facilitate adoption of STE parameters in clinical practice and research, and improve reproducibility.

背景:斑点追踪超声心动图(STE)可量化左心室(LV)变形,对评估左心室功能非常有用。STE在临床上的应用越来越广泛,因此简化和标准化STE非常重要。人工勾画感兴趣区(ROI)是一项劳动密集型工作,可能会影响应变值的评估。目的:我们假设,通过临床超声心动图检查训练的深度学习(DL)模型可以与现成的超声心动图分析软件相结合,自动进行应变计算,其保真度可媲美经过培训的心脏病专家:数据包括静帧超声心动图图像和心脏病专家定义的 ROI,这些图像来自一所大学医院门诊部的 672 次临床超声心动图检查。检查对象包括缺血性心脏病、心力衰竭、瓣膜病和传导异常患者,以及一些健康受试者。我们采用了基于 EfficientNetB1 的架构,并评估了不同的技术和特性,包括数据集大小、数据质量、增强和迁移学习。DL预测的ROI被重新引入到市售的超声心动图分析软件中,以自动计算应变值:与操作者相比,DL 自动应变计算的总体纵向应变(GLS)和单投影纵向应变(LS)的平均绝对差值分别为 0.75(95% CI 0.58-0.92)和 1.16(95% CI 1.03-1.29)。布兰德-阿尔特曼图显示没有明显的偏差,尽管在较低的平均 LS 范围内有较少的异常值。技术和数据属性没有导致性能的显著提高/降低:该研究表明,DL 辅助自动应变测量是可行的,其结果在观察者间差异范围内。在超声心动图分析中采用 DL 可进一步促进 STE 参数在临床实践和研究中的应用,并提高可重复性。
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引用次数: 0
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BMC Medical Imaging
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